ID AF325739; SV 1; linear; genomic RNA; STD; VRL; 3174 BP. XX AC AF325739; XX DT 08-OCT-2002 (Rel. 73, Created) DT 17-JUL-2008 (Rel. 96, Last updated, Version 3) XX DE Cowpea chlorotic mottle virus strain T segment RNA1, complete sequence. XX KW . XX OS Cowpea chlorotic mottle virus OC Viruses; Riboviria; Bromoviridae; Bromovirus. XX RN [1] RP 1-3174 RX DOI; 10.1007/s00705-008-0137-3. RX PUBMED; 18604602. RA Quan S., Nelson R.S., Deom C.M.; RT "The methyltransferase domain of the 1a protein of cowpea chlorotic mottle RT virus controls local and systemic accumulation in cowpea"; RL Arch. Virol. 153(8):1505-1516(2008). XX RN [2] RP 1-3174 RA Quan S., Nelson R.S., Deom C.M.; RT "The 5'-half of the 1a protein gene of cowpea chlorotic mottle virus RT facilitates phloem-dependent accumulation in cowpea."; RL Unpublished. XX RN [3] RP 1-3174 RA Quan S., Nelson R.S., Deom C.M.; RT ; RL Submitted (01-DEC-2000) to the INSDC. RL Plant Pathology, University of Georgia, Plant Sciences Building, Athens, GA RL 30602, USA XX DR MD5; a64f94c41d36d7c38f0abcc04638ee24. DR RFAM; RF01084; TLS-PK3. XX FH Key Location/Qualifiers FH FT source 1..3174 FT /organism="Cowpea chlorotic mottle virus" FT /segment="RNA1" FT /strain="T" FT /mol_type="genomic RNA" FT /db_xref="taxon:12303" FT CDS 71..2950 FT /codon_start=1 FT /product="1a protein" FT /db_xref="GOA:Q8BEM3" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR022184" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q8BEM3" FT /protein_id="AAN37635.1" FT /translation="MASSLDLLKLISERGADSRGASDIVEQQAVKQLLEQVDYSKRSKK FT INIRNKLTPDEENAFRARYGGAFDLNLTQQYNAPHSLAGALRIAEHYDCLSSFPPLDPI FT IDFGGSWWHHYSRKDTRIHSCCPVLGVRDAARHEERLCRMRKLLQECDDREDLPDFCID FT RAESCSVQADWAICIHGGYDMGFTGLCEAMHSHGVRILRGTIMFDGAMLFDNEGVLPLL FT KCRWMKSGKGKSEVIKFDFMNESTLSYIHSWTNLGSFLTESVHVIGGTTYLLERELLKC FT NIMTYKIVATNLKCPKETLRHCVWFENISQYVAVNIPEDWNLTHWKPVRVAKTTVREVE FT EIAFRCFKENKEWTENMKAIASILSAKSSTVIINGQAIMAGERLNIDEYHLVAFALTMN FT LYQKYENIRNFYSEMEWKGWVNHFKTRFWWGGSTATSSTGKIREFLAGKFPWLRLDSYK FT DSFVFLSKISDVKEFENDSVPISRLRSFFSSEDLMERIELELESAQKRRREKKKKEVEK FT IDEEEFQDAIDIPNDAVRDDAKPEKEPKPEVTVGAEPTGPEEASRHFAIKEFSDYCRRL FT DANAVSNLRRLWAIAGCDGRTARNKSILETYHRVDDMINLHYPGGQWLYPKKYDYEVGF FT NDSGLGPKFDDELYVVDKSCICANYQVLSKNTDSLKAPSCKISLCDGVAGCGKTTAIKS FT AFNIAEDLVVTANKKSAEDVREALFPDNPSSEIALKVIRTADSALMHGLPQCKRLLVDE FT AGLLHYGQLLAVAALCKCQSVLAFGDTEQISFKSRDATFRLKYGDLQFDSRDIVTETWR FT CPQDVISAVQTLKKKAGNRTSKYLGWKSHSKVSRSISHKEIASPLQVTLSREKFYLTMT FT QADKAALVSRAKDFPELDKAWIEKHIKTVHEAQGVSVDHAVLVRLKSTKCDLFKTEEYC FT LVALTRHKITFEYLYVGMLSGDLIFRSIS" XX SQ Sequence 3174 BP; 882 A; 600 C; 778 G; 914 T; 0 other; gtaatccacg agaacgaggt tcaatccctt gtcgactcac ggagtatcga acttttctaa 60 attttattta atggcaagtt ctttagatct tttgaaattg atttctgaga gaggcgctga 120 cagccgaggc gcttcggaca tagttgaaca acaagctgta aagcaattgc ttgagcaagt 180 tgactactcg aaaaggtcca agaaaatcaa tattagaaat aaactcacgc ccgatgaaga 240 gaatgctttc cgggcgcgct atggaggagc ttttgatttg aacttaactc aacaatataa 300 tgctccccat agtttggctg gagctctgcg aatagcggag cattatgact gtctttcaag 360 cttcccccct cttgatccca tcattgattt tggtggttct tggtggcatc attattccag 420 gaaggacaca cgtattcaca gttgttgtcc cgtgttgggc gtcagagatg ctgctcgaca 480 tgaagaacga ctatgtagaa tgcgtaagtt gttacaagag tgtgacgaca gagaagatct 540 accagatttc tgtattgata gagctgaatc ctgcagtgtc caggctgatt gggccatatg 600 tattcatggt ggttatgaca tgggtttcac aggtctatgt gaagctatgc attcccacgg 660 ggtgcgtatt ttgcggggta ctattatgtt cgacggtgct atgttgtttg acaacgaagg 720 cgttttacct ttgttgaagt gccgttggat gaagtctggg aaaggtaaat ctgaggtcat 780 taaatttgat ttcatgaatg agagcacact ttcttatatt cattcttgga ccaatcttgg 840 ttcatttttg actgagtctg tgcatgtgat aggaggtact acttatctcc tagaacgtga 900 gctcttaaaa tgcaatatta tgacctataa aatcgttgcc acaaatctga agtgtcctaa 960 ggaaacgttg cgacattgtg tttggtttga gaatatttcc caatatgtcg ccgttaacat 1020 tcctgaagac tggaatctga ctcattggaa acccgtacgt gtggcaaaaa ccaccgtaag 1080 agaggttgaa gagattgctt ttcgatgttt taaggagaat aaagagtgga cggagaatat 1140 gaaagcgata gcatctattc tgtccgctaa atcttctaca gtcattatca acggtcaagc 1200 tatcatggcc ggagagaggc tgaacattga tgagtatcat ctcgtcgcct ttgctctcac 1260 tatgaatttg tatcagaaat atgaaaatat tcggaatttt tatagtgaga tggaatggaa 1320 gggctgggtc aaccacttta aaactagatt ttggtgggga ggaagtacgg ctacctcaag 1380 cactggtaag attcgagagt ttctggctgg taaattccct tggctgaggt tagattcgta 1440 caaagacagt tttgtttttc tgtcgaagat ctctgatgtc aaagagtttg agaacgattc 1500 tgttcccatc tccagactga ggagtttctt cagcagtgag gacctcatgg agcgcattga 1560 attagagctt gaatctgcgc aaaagcgtcg tcgggaaaag aaaaagaaag aggtcgaaaa 1620 aatcgatgag gaggaatttc aagatgccat cgatatcccg aatgatgccg tcagagatga 1680 cgctaaacct gaaaaggagc ctaaaccgga agtgaccgtt ggagctgaac caacaggccc 1740 cgaagaggca tcgagacact ttgccatcaa ggaattctct gattattgtc gtcgccttga 1800 tgctaacgct gtgtcaaatc ttcgtcgttt atgggccatt gctggctgcg atgggaggac 1860 tgcgagaaat aagtcgatcc ttgaaactta tcatagggtt gacgatatga tcaatttgca 1920 ctatcctggg ggtcaatggt tgtaccccaa gaaatacgac tatgaagtgg gtttcaatga 1980 ctcgggctta ggtccgaagt ttgatgatga gctttatgtc gttgacaaat catgtatatg 2040 tgcgaattat caggtgctga gcaaaaatac agatagctta aaagcacctt cttgcaaaat 2100 ctcgttgtgt gacggagttg ctggatgcgg gaagaccaca gcaattaaat ccgcgttcaa 2160 catagctgag gacctagtgg taactgctaa caagaagtcc gctgaagacg tcagggaggc 2220 tctattccct gataatccat cgtctgagat agcgttgaag gttataagga cggcagactc 2280 tgctttaatg catggtttac cgcaatgtaa gcgcttattg gtcgatgaag ctgggctact 2340 acactatggt cagctgctcg ctgtggctgc tctctgtaag tgtcagtctg ttcttgcatt 2400 cggagacacg gagcaaattt cttttaaatc gcgagatgca actttccgcc tgaaatatgg 2460 tgatttgcag tttgacagtc gcgatattgt tacggagaca tggagatgtc cgcaagatgt 2520 tatttccgca gttcagactc tgaaaaagaa ggcgggaaac aggacctcca aatatttggg 2580 ttggaaatcc cattctaaag tatccaggag cattagtcat aaagaaatag catcaccttt 2640 acaggtgacg ctttcaaggg aaaaattcta tttgacaatg actcaggctg ataaagccgc 2700 ccttgtttcc agggctaagg atttcccaga gcttgataag gcctggattg agaaacatat 2760 aaaaaccgtt catgaggctc aaggtgtgtc agtagatcac gctgtattgg taagacttaa 2820 atctaccaag tgtgatctat ttaaaactga agaatattgc ttggtggctt tgactcgaca 2880 taagattacc tttgagtatc tttatgttgg tatgctatca ggtgatttaa tatttagaag 2940 tatatcttga tcctgagtgt gattcactta cgaatcagtt ctaacggttt ctataaaccg 3000 tagtcgtcgt tgcgacgccg accgtcttac aagacgttcg agctgccttt gggttttact 3060 ccttgaaccc ttcagaagaa ttcttcggag ttcgtaccag tatctcacat agtgaggtga 3120 taagactggt gggcagtgcc tagtcgaaag actaggtgat ctctaaggag acca 3174 //