ID AF336806; SV 1; circular; genomic DNA; STD; VRL; 2754 BP. XX AC AF336806; XX DT 02-JUL-2001 (Rel. 68, Created) DT 26-JAN-2007 (Rel. 90, Last updated, Version 5) XX DE Chilli leaf curl virus-[Multan] segment DNA-A, complete sequence. XX KW . XX OS Chilli leaf curl virus-[Multan] OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2754 RX AGRICOLA; IND44790013. RA Shih S.L., Tsai W.S., Green S.K., Khalid S., Ahmad I., Rezaian M.A., RA Smith J.; RT "Molecular Characterization of Tomato and Chili Leaf Curl Begomoviruses RT from Pakistan"; RL Plant Dis. 87(2):200-200(2003). XX RN [2] RP 1-2754 RA Shih S.L., Green S.K., Ahmad I., Smith J.; RT ; RL Submitted (16-JAN-2001) to the INSDC. RL Virology Unit, Asian Vegetable Research and Development Center, P.O. Box RL 42, Shanhua, Tainan, Taiwan, Republic of China XX DR MD5; 926f98efdf5a11c5955ea1b490e62d5e. XX FH Key Location/Qualifiers FH FT source 1..2754 FT /organism="Chilli leaf curl virus-[Multan]" FT /segment="DNA-A" FT /mol_type="genomic DNA" FT /country="Pakistan:Multan, Punjab province" FT /note="isolated in 1998 from a pepper plant" FT /db_xref="taxon:222451" FT gene 146..502 FT /gene="V2" FT CDS 146..502 FT /codon_start=1 FT /gene="V2" FT /product="pre-coat protein" FT /db_xref="GOA:Q91MF4" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:Q91MF4" FT /protein_id="AAK69633.1" FT /translation="MWDPLVNEFPETVHGFRCMLAVKHLQLLENTYSPDTLGYDLIRDL FT ISVIRAKNYVQATSRYNHFHARLEGTPPSQLRQPLCQPCCCPHCPRHKGQSMGEQAHEQ FT EAQDVQDVQKPRCS" FT gene 306..1076 FT /gene="V1" FT CDS 306..1076 FT /codon_start=1 FT /gene="V1" FT /product="coat protein" FT /db_xref="GOA:Q91MF3" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:Q91MF3" FT /protein_id="AAK69634.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYASRAAAPIVRVTKARAWA FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNMHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLQIRIYFYDSVSN" FT gene complement(1073..1477) FT /gene="C3" FT CDS complement(1073..1477) FT /codon_start=1 FT /gene="C3" FT /product="C3 protein" FT /db_xref="GOA:Q91MF2" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q91MF2" FT /protein_id="AAK69635.1" FT /translation="MDSRTGEPITAAQAENGVFIWEITNPLYFKITEHHNRPFLRSRDL FT ITVQIQFNHNLRKALGIHKCFLTFRIWTTLQPQTGHFLRVFKTQVLQFLNNFAVISINN FT VIRAVDHVLWNVLHNIVYVQQSYSIKFNLY" FT gene complement(1218..1622) FT /gene="C2" FT CDS complement(1218..1622) FT /codon_start=1 FT /gene="C2" FT /product="C2 protein" FT /db_xref="GOA:Q91MF1" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q91MF1" FT /protein_id="AAK69636.1" FT /translation="MRPSSPSQAHSTQVPIKVQHRLAKKGTRRRRVDLDCGCSYFIALR FT CHGYGFTHRGTHHCSSGREWRVYLGDNKSPVFQDNRAPQQAIPEEPRPHHRADTVQSQP FT EESVGDTQMFSNLPNLDDLTASDWSFLKGI" FT gene complement(1561..2610) FT /gene="C1" FT CDS complement(1561..2610) FT /codon_start=1 FT /gene="C1" FT /product="replication-associated protein" FT /db_xref="GOA:Q91MF0" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q91MF0" FT /protein_id="AAK69637.1" FT /translation="MPRAGRFNINAKNYFLTYPNCSLTKEEALSQLQNLETPVNKLFIR FT VCRELHENGEPHLHVLIQFEGKYQCTNNRFFDLISPTRSANFHPNIQRAKSSSDVKAYV FT EKDGDFIDFGVFQIDGRSARGGCQSANDAYAEAINSGSKSSALNILREKAPKDYVLQFH FT NLNANLDRIFTPPLEVYVSPFCSSSFDQVPEELEEWAAENVLGAAARPLRPISIVIEGE FT SRTGKTIWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVQIKGGIPAIFLCNPGPNSSYKEFLDEEKNSALKNWALKNATFVTLTGPL FT YSGSNQSTA" FT gene complement(2160..2453) FT /gene="C4" FT CDS complement(2160..2453) FT /codon_start=1 FT /gene="C4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:Q91ME9" FT /protein_id="AAK69638.1" FT /translation="MGNLIYTCSSNSRENTNAQTTDSSTLFPQPGQQISIRTFRELKAL FT QMSKPMWRKTETSLTLEFSKSMADQLEEVANLPTTHMPRQSIQGPSLRPSIF" XX SQ Sequence 2754 BP; 750 A; 573 C; 635 G; 796 T; 0 other; accggatggc cgcgattttt ttaccgtggg ccccaccttg cacgtgctga caaagacatg 60 tggaccaatg aaaattgtcc ctcatagctt aattatttca tggtcccccc tataaacttg 120 ggctccaagt agtgcactct taccaatgtg ggatccatta gtaaacgagt ttcctgaaac 180 cgttcacggt tttaggtgta tgttagcagt taaacatctg cagctactag aaaatacata 240 ttctccagac actctggggt acgatttaat tcgggatttg atctccgtta ttagggctaa 300 gaattatgtc caagcgacca gcagatataa tcatttccac gcccgcctcg aaggtacgcc 360 gccgtctcaa cttcgacagc ccttatgcca gccgtgctgc tgcccccatt gtccgcgtca 420 caaaggccag agcatgggcg aacaggccca tgaacaggaa gcccaggatg tacaggatgt 480 acagaagccc agatgttcct agggggtgtg aaggcccatg taaggtccag tcttttgagt 540 ctagacacga tgtagttcat atagggaagg tgatgtgtat tagtgatgtt acccgtggta 600 ctgggttaac ccatagagta ggtaagcgtt tctgtgttaa gtctgtgtat gtattaggta 660 agatatggat ggatgagaat atcaagacta agaaccacac gaatagtgtg atgttcttcc 720 ttgtccgtga ccgtcgtcct gttgataaac cacaagattt tggagaggtg ttcaacatgt 780 ttgacaacga gcctagcact gccactgtga agaatatgca tagagatcgt tatcaggttt 840 tgagaaaatg gcacgcaacg gttactggtg gacagtacgc ttcgaaggaa caggcattag 900 ttaagaagtt cgttagggtt aacaattatg ttgtgtataa ccagcaagaa gctggaaaat 960 atgagaatca tactgagaat gcattgatgt tgtacatggc gtgtactcac gcctctaatc 1020 ctgtgtatgc tacgttacag atacggatct atttctatga ttcagtatcg aattaataaa 1080 gattgaattt tattgaatat gattgttgta catatacaat gttatgtaat acattccata 1140 atacatggtc gacagctcta attacattgt ttatactaat tacagcaaaa ttatttaaaa 1200 actgcaacac ttgggtctta aataccctta agaaatgacc agtctgaggc tgtaaggtcg 1260 tccagattcg gaaggttaga aaacatttgt gtatccccaa cgctttcctc aggttgtgat 1320 tgaactgtat ctgcacggtg atgaggtctc ggctcctcag gaatggcctg ttgtggtgct 1380 cggttatctt gaaatacagg ggatttgtta tctcccagat aaacacgcca ttctctgcct 1440 gagctgcagt gatgggttcc cctgtgcgtg aatccatagc cgtggcagcg taatgcgatg 1500 aaatatgaac agccgcagtc taggtcaacg cgacgacgcc tggtcccctt cttcgctagc 1560 ctatgctgta ctttgattgg aacctgagta gagtgggcct gtgagggtga cgaaggtcgc 1620 attcttcaaa gcccaatttt tgagtgcgct atttttctct tcgtctaaga actctttata 1680 gctggaattg ggtcctggat tgcagaggaa gatagcggga attccacctt taatttgaac 1740 tggcttcccg tatttagtat ttgattgcca gtccctttgg gcccccatga attccttaaa 1800 gtgctttagg tagtggggat cgacgtcatc aatgacgttg taccaggcgt cattactgta 1860 gacctttggg ctaaggtcga gatgtccaca caaatagttg tgtggaccca atgacctggc 1920 ccatatcgtc ttccccgtcc tactctcacc ctctatgaca atacttatgg gtcttaaagg 1980 ccgcgcagcg gcaccgagaa cattctcggc agcccactcc tcaagttcct cgggaacttg 2040 atcaaaagaa gaagaacaaa aaggagaaac ataaacctcc aagggaggtg taaaaatcct 2100 atctaaatta gcatttaaat tatgaaattg taaaacataa tctttgggag ctttctccct 2160 taaaatattg agggccgaag acttggaccc tgaattgatt gcctcggcat atgcgtcgtt 2220 ggcagattgg caacctcctc tagctgatct gccatcgatt tggaaaactc caaagtcaat 2280 gaagtctccg tctttctcca cataggcttt gacatctgaa gagcttttag ctctctgaat 2340 gttcggatgg aaatttgctg accgggttgg ggaaataagg tcgaagaatc tgttgtttgt 2400 gcattggtat tttccctcga attggatgag cacgtgtaga tgaggttccc cattctcgtg 2460 caattctcga caaaccctaa taaataattt attaactggg gtttccaagt tctgtaattg 2520 ggaaagtgcc tcttctttag taagagagca gttgggatat gttaggaaat aatttttagc 2580 atttatattg aatctgccag ccctaggcat attggtggac actcaaactt actatgtaat 2640 cggtggaatg ggggacaata tatatgtgtc caccaatggc aatttggtaa ttgttgtcat 2700 ctaaaaaaat tcaaaattca aattccgaca aaagcggcca tccgcactaa tatt 2754 //