ID AF473561; SV 1; circular; genomic RNA; STD; VRL; 5666 BP. XX AC AF473561; XX DT 09-MAY-2002 (Rel. 71, Created) DT 09-MAY-2002 (Rel. 71, Last updated, Version 1) XX DE Beet western yellows virus strain USA, complete genome. XX KW . XX OS Beet western yellows virus OC Viruses; Riboviria; Luteoviridae; Polerovirus. XX RN [1] RP 1-5666 RA Beuve M., Lemaire O.; RT "Sugar beet-infecting beet western yellows virus (BWYV)-USA strain RT represents a distinct Polerovirus species"; RL Unpublished. XX RN [2] RP 1-5666 RA Beuve M., Lemaire O.; RT ; RL Submitted (22-JAN-2002) to the INSDC. RL Biologie des Interactions Virus Vecteur, INRA, 28 rue de Herrlisheim BP RL 507, Colmar 68021, France XX DR MD5; 83744c3a830f9d5c9c0672c1ff7327c5. DR EuropePMC; PMC2583970; 18937850. DR EuropePMC; PMC4422679; 25946037. DR EuropePMC; PMC4755677; 26889117. DR RFAM; RF01074; RF_site1. XX FH Key Location/Qualifiers FH FT source 1..5666 FT /organism="Beet western yellows virus" FT /strain="USA" FT /mol_type="genomic RNA" FT /db_xref="taxon:12042" FT CDS 29..745 FT /codon_start=1 FT /product="P0 protein" FT /note="ORF0" FT /db_xref="GOA:Q8JZ12" FT /db_xref="InterPro:IPR006755" FT /db_xref="UniProtKB/TrEMBL:Q8JZ12" FT /protein_id="AAM22677.1" FT /translation="MLFETYNHILIFRANRFLTAGERILNTAEFLIAYLILFVKHDNAN FT VNIFLARLPLLLSEQLQGDFRYVPGRRQRHRLARLHKACGASLHSSGAVNLRLPPTQDV FT AGLFLARNASRSMGERIHKHQDLLAKGKDEFDRFLSVWCADAERSLSQTSKVCAERDNV FT CVELINLGFALRALVLDPRVHCRSAYARVALCVYRIYGEDSGLDFWRLANFPLQCWPYH FT IEKHFTGSVVQKILQM" FT CDS 150..2057 FT /codon_start=1 FT /product="RNA-dependent RNA polymerase P1 protein" FT /note="ORF1" FT /db_xref="GOA:Q8JZ11" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR018019" FT /db_xref="UniProtKB/TrEMBL:Q8JZ11" FT /protein_id="AAM22680.1" FT /translation="MTMRMLTFFLLASLCSLASSYKGTSVMSPGAANVTVWPGYTKPVA FT PHYIPQAQLTYDCPPPKTLQDYSSHEMLHEVWGRGSTNTKTSLLRVKTSLIDFCRSGVP FT MLSAVSHKLLKYVLRGTTYVWSSLIWASLCALWFLIREYTVEVLMLGSLYVFTVFMVKI FT AAWIFGAWPIFLFNVGLTILRSISRVLWFRRSYKCEKSVEGFLSFKIPQSPPKNSVLQV FT QHPDGSHAGYATCVTLYNGTTGLLTAQHVVSSGCKVVSTRNGNKIPLSEFKVEIESPTR FT DLMLMTGPPNWEGTLACKAVNFQTASNLCKSKASFFTFNGEAWESSNAEITGISPCRKF FT VSVLSNTDPGHSGTPYFNGKTLLGVHIGGAKEENANYLAPVPPRAGLTTPNYVFETTAP FT QGRIFTEEEIRELAEDYSLSEVRSILAARKGKMSYEVETAKSSGNGRAAAPAETTATRK FT ESTHKAGESSGVETHQAAVPISQKERSAQDVTQATYTPPMMRANQVAGAKSQTTTASSD FT AFSEIKEAILRKIDIRSIERQVVETLAEKAMKKPRRAGRRRSANKQKTFVNTSAPSTDG FT NQGQGKKPPVSSKSEVSPSFTTLNKRANRVGEQKSSSSTQSWKPKPAASGGPSSGPKRN FT " FT CDS <1454..3331 FT /codon_start=1 FT /product="RNA-dependent RNA polymerase P2 protein" FT /note="ORF2; RNARN; low abundance translation product FT expressed from -1 ribosomal frameshift" FT /db_xref="GOA:Q8JZ10" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:Q8JZ10" FT /protein_id="AAM22681.1" FT /translation="SGDRQELGKRESGSARRNNRNPQRKHPQGRRKQWRRNPPSCCSYF FT TEGTLGPRCHASHVHTPDDEGQPGCWCEVPNHDCFFRRFQRDQRSHPAEDRYSFDREAG FT RGDPCREGNEETPESRAEKICEQAENFCQYFSSLYRWESGSGKEAPGFEQIGSLPQFYH FT PKQKGESRWGAKVLQLHPELEAQTRGFGWPQFGAQAELKSLRLQAARWLERAQQVKIPS FT TEERERVIRKCCEAYQNAKSNGPNATRGNKLSWDNFLEDFKQAVFSLEFDAGIGVPYIA FT YGKPTHRGWVEDQELLPILARLTFIRLQKMLEARFEELSPEQLVQEGLCDPIRVFVKGE FT PHKQSKLDEGRYRLIMSVSLVDQLVARVLFQNQNKREIALWRAVPSKPGFGLSTDEQVV FT EFVQMLSAQVKVRPPQLISDWRQHLVATDCSGFDWSVSDWLLEDDMEVRNRLTTDLNET FT TSKLRAAWLKCISNSVLCLSDGTLLAQRVPGVQKSGSYNTSSSNSRIRVMAAFHCGAEW FT AMAMGDDALESVSTDLGKYAALGFKVEESSKLEFCSHIFEREDLAVPVNKAKMIYKLIH FT GYEPECGNPEVLVNYLTACFAILNELRSDPQMVQTLYSWLVKPVQPQKN" FT CDS 3531..5543 FT /codon_start=1 FT /transl_except=(pos:4137..4139,aa:OTHER) FT /product="aphid transmission P5 protein" FT /note="P5 is translated from subgenomic RNA as a low FT abundance fusion protein P3/P5 by a read-through of the P3 FT stop codon" FT /db_xref="GOA:Q8JZ09" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:Q8JZ09" FT /protein_id="AAM22682.1" FT /translation="MNTVVGRRTINGRRRPRRQARRAQRSQPVVVVQTSRTTQRRPRRR FT RRGNNRTRGAVSTRGASSSETFVFSKDNLAGSSSGAITFGPSLSDCPAFSNGILKAYHE FT YKISMVILEFVSEASSQNSGSIAYELDPHCRLDALSSTINKFGITKPGRRAFTASYING FT TDWHDVAKDQFRILYKGNGSSSIAGSFRITMKCQFHNPKXVDEEPGPSPGPSPSPQPTP FT QKKYRFIVYTGVPVTRIMAQSTDDAISLYDMPSQRFRYIEDENMNWTNLNSRWYSQNNL FT KAIPMIIVPVPQGEWTVEISMEGYQPTSSTTDPNKDKQDGLIAYNDDLNEGWNVGIYNN FT VEITNNKADNTLKYGHPDMELNNCHFNQGQCLERDGDLTCHVKTTGDNASFFIVGPAVQ FT KQSKYNYAVSYGAWTDRMMEIGMIAIALDEQGSSGSTRTQRPKRAGHSMAVSTWETINY FT PEKENSEITETSQRQDFKTPLHISESSDPLEVGKGGMPLPADENIPDFVGDDPWFEIST FT RKSQEEEAMSHSSVLKPQLKPPGLPKPQPVRTIRDFDPKPDLVEAWRPDVNPGYSKEDV FT AAATVMYGGSVHEGRSMIDKRDKAVLDGRKRWGSSLASSLTGGTLKASAKSEKLAKLTS FT SERAQFERIKRQQGATRASEFLEQLLAGTNPDPRS" FT CDS 3531..4139 FT /codon_start=1 FT /product="coat protein" FT /note="ORF3; P3 protein" FT /db_xref="GOA:Q8JZ08" FT /db_xref="InterPro:IPR001517" FT /db_xref="UniProtKB/TrEMBL:Q8JZ08" FT /protein_id="AAM22678.1" FT /translation="MNTVVGRRTINGRRRPRRQARRAQRSQPVVVVQTSRTTQRRPRRR FT RRGNNRTRGAVSTRGASSSETFVFSKDNLAGSSSGAITFGPSLSDCPAFSNGILKAYHE FT YKISMVILEFVSEASSQNSGSIAYELDPHCRLDALSSTINKFGITKPGRRAFTASYING FT TDWHDVAKDQFRILYKGNGSSSIAGSFRITMKCQFHNPK" FT CDS 3562..4089 FT /codon_start=1 FT /product="putative movement protein" FT /note="ORF4; P4 protein; translated by a leaky scanning FT from subgenomic RNA" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:Q8JZ07" FT /protein_id="AAM22679.1" FT /translation="MEEDDHAGKHDALSALSQWLWSKPLGQHNADLDDDEEVITGQEEL FT FLPEEQAQARHLFSRKTISREVPVEQSRSGRVYQTAQHSLMEYSRPTMSIKSRWSFWSS FT SPKPLPKTPVPSLTSWTHTVGSTPFPQPSISSGSQSPGGGRLQRLTSTGRIGTTLPRTN FT SGSSTKAMVLHR" XX SQ Sequence 5666 BP; 1558 A; 1462 C; 1388 G; 1258 T; 0 other; acaaaagaat atagcgagaa accagcgaat gctctttgaa acttacaatc acattttgat 60 tttcagagct aatcgtttct tgacagcagg cgagcgaatc ttgaacacag cagagttctt 120 gatcgcatat ttgattcttt ttgttaaaca tgacaatgcg aatgttaaca tttttcttgc 180 tcgcctccct ttgctcctta gcgagcagct acaaggggac ttccgttatg tccccgggcg 240 ccgccaacgt caccgtttgg ccaggctaca caaagcctgt ggcgcctcat tacattcctc 300 aggcgcagtt aacttacgac tgccccccac ccaagacgtt gcaggactat tcctcgcacg 360 aaatgcttca cgaagtatgg gggagaggat ccacaaacac caagacctcc ttgctaaggg 420 taaagacgag tttgatagat ttctgtcggt ctggtgtgcc gatgctgagc gcagtctctc 480 acaaacttct aaagtatgtg ctgagaggga caacgtatgt gtggagctca ttaatttggg 540 cttcgctttg cgcgctttgg ttcttgatcc gcgagtacac tgtcgaagtg cttatgctcg 600 ggtcgctcta tgtgtttacc gtatttatgg tgaagatagc ggcctggatt tttggcgcct 660 ggccaatttt cctcttcaat gttggcctta ccatattgag aagcatttca cgggttctgt 720 ggttcagaag atcttacaaa tgtgagaaat ccgttgaggg tttcctatcc ttcaagatcc 780 cacagtcccc cccaaagaac agtgtcctcc aagtgcaaca tccagacggc tcccacgcag 840 gctatgccac atgcgtgacg ctttacaatg gaacaaccgg tcttttgacc gcacaacatg 900 tagtttcgtc tgggtgcaag gtcgtgtcga caaggaacgg gaataaaatc cccttgtctg 960 agtttaaggt tgaaattgaa tcaccgacac gagacctaat gctaatgaca ggaccaccaa 1020 actgggaagg aacccttgct tgcaaggctg tgaacttcca gacagcatct aacctctgca 1080 aatcaaaagc atccttcttc accttcaatg gggaagcatg ggaatcatca aatgcagaga 1140 ttacagggat ctccccctgc cgaaaattcg tctccgtcct gagcaataca gatccaggac 1200 acagcggcac cccgtacttc aacggtaaaa cgttattagg tgtgcatata ggcggagcga 1260 aagaggagaa tgccaattac ttggcccccg taccccctcg tgccggttta acaactccaa 1320 attatgtgtt tgagaccacg gcaccacagg gaagaatctt cacagaagag gagattcgcg 1380 agctcgctga agattatagc ttgagcgaag tccggtctat actagccgcc cgcaagggaa 1440 aaatgagcta tgaagtggag accgccaaga gctcgggaaa cgggagagcg gcagcgcccg 1500 ccgaaacaac cgcaacccgc aaagaaagca cccacaaggc cggagaaagc agtggcgtag 1560 aaacccacca agctgctgtt cctatttcac agaaggaacg ctcggcccaa gatgtcacgc 1620 aagccacgta cacacccccg atgatgaggg ccaaccaggt tgctggtgcg aagtcccaaa 1680 ccacgactgc ttcttcagac gctttcagcg agatcaaaga agccatcctg cggaagatcg 1740 atattcgttc gatcgagagg caggtcgtgg agacccttgc cgagaaggca atgaagaaac 1800 cccggagagc agggcggaga agatctgcga acaagcagaa aacttttgtc aatacttcag 1860 ctccctctac cgatgggaat cagggtcagg gaaagaagcc cccggtttcg agcaaatcgg 1920 aagtctcccc cagttttacc accctaaaca aaagggcgaa tcgcgttggg gagcaaaagt 1980 cctccagctc cacccagagt tggaagccca aacccgcggc ttcgggtggc cccagttcgg 2040 ggcccaagcg gaattgaaat ccttgcggct acaagccgcc aggtggctgg aacgcgccca 2100 gcaagttaaa atcccctcaa ctgaggagcg ggagcgcgtc ataaggaaat gctgcgaggc 2160 ctaccaaaac gccaaatcta atgggcctaa cgcaacgcga ggaaacaagc tctcctggga 2220 caacttccta gaggacttta agcaagctgt cttctcgctc gagtttgacg ccggcatcgg 2280 agtaccgtac atcgcttacg ggaagccgac acaccgggga tgggttgaag accaagagtt 2340 actccccatt ttagctcgcc tgaccttcat ccgactacag aagatgttgg aggctaggtt 2400 cgaagagctt tccccggaac agctagtgca agaagggctc tgtgacccaa tacgagtctt 2460 tgtcaaagga gagccgcaca agcagtccaa actcgatgag gggcgctacc gcctcataat 2520 gagcgtttcc ttggtggatc aattggtagc ccgggtcttg tttcagaacc agaacaagcg 2580 tgaaatcgcc ctatggaggg ctgtaccatc caaacccggt tttggcttgt ccacggacga 2640 gcaagtcgtg gagtttgttc aaatgctctc cgcgcaggtg aaagtaagac ctccccaact 2700 gattagtgat tggaggcaac acctagttgc aactgattgc tccggttttg actggagtgt 2760 ttcggattgg cttcttgaag atgacatgga agtccgaaac cgcctcacca cggatcttaa 2820 cgagacaaca agcaagcttc gcgctgcttg gttgaaatgt atctccaaca gtgtcctgtg 2880 tctctccgat ggcaccctgc tcgcgcagcg tgtgcctgga gttcaaaagt caggaagcta 2940 caatacctcc tcatccaatt cacggattcg agtgatggct gctttccact gtggagccga 3000 gtgggcgatg gcgatgggcg atgacgccct agaatcagtt agcaccgacc tggggaaata 3060 cgccgccctg ggtttcaaag tcgaggaatc ttcaaaactg gaattttgtt ctcatatttt 3120 tgagcgtgaa gacctcgccg ttccggtcaa taaggccaaa atgatttaca agctaataca 3180 tggctatgaa ccggaatgtg gcaaccctga ggtgcttgtt aattatctga ccgcgtgctt 3240 cgcgattctt aatgaattac ggtcagatcc tcagatggtc caaactctct attcgtggct 3300 ggtcaaacca gtacagccac aaaagaatta agggagtata aagaacacta gccgagcaaa 3360 cgaaagttgc aagcatcgga agtcaagtct ttcacatcag ccggacacac aaaatagatt 3420 tcaaatttct agcaggattt gcatcaggct ttcttgccgc aatcccaatt tcagtagccg 3480 gtatttactt agtctacctc aaaatctcac ccacgtgcgg agcatcgtta atgaatacgg 3540 tcgtgggtag aagaacaatc aatggaagaa gacgaccacg caggcaagca cgacgcgctc 3600 agcgctctca gccagtggtt gtggtccaaa cctctcggac aacacaacgc cgacctagac 3660 gacgacgaag aggtaataac cggacaagag gagctgtttc taccagagga gcaagctcaa 3720 gcgagacatt tgttttctcg aaagacaatc tcgcgggaag ttccagtgga gcaatcacgt 3780 tcgggccgag tctatcagac tgcccagcat tctctaatgg aatactcaag gcctaccatg 3840 agtataaaat ctcgatggtc attttggagt tcgtctccga agcctcttcc caaaactccg 3900 gttccatcgc ttacgagctg gacccacact gtaggctcga cgccctttcc tcaaccatca 3960 ataagttcgg gatcacaaag cccgggagga gggcgtttac agcgtcttac atcaacggga 4020 cggattggca cgacgttgcc aaggaccaat tcaggatcct ctacaaaggc aatggttctt 4080 catcgatagc cggttctttt agaatcacta tgaagtgcca attccacaac cccaaatagg 4140 tagacgagga acccggccct agcccagggc cttctccctc tccacaaccc acaccccaaa 4200 agaaatatcg tttcatcgtc tatactggtg tccctgtgac ccgtataatg gcccaatcaa 4260 cagatgatgc catctctttg tatgacatgc cgtctcaacg gtttcgttac atagaggacg 4320 agaacatgaa ctggacgaac ctcaattctc gatggtattc ccagaataat ttaaaagcca 4380 tcccgatgat aatagtacca gtccctcaag gtgagtggac tgtggaaatt tcgatggaag 4440 ggtatcaacc aacctcaagc accacagatc ctaataagga caaacaagat ggtctcattg 4500 catacaatga tgacctcaac gagggttgga atgtggggat ttacaacaat gtggagataa 4560 ccaacaataa ggccgacaac actctgaagt acggccaccc agacatggaa ctcaataatt 4620 gtcactttaa tcaaggacaa tgtctggaga gagatggaga tttaacctgt catgtgaaaa 4680 caactggcga caatgcctcc ttctttattg ttggtcccgc cgtccagaag caatcaaagt 4740 ataactacgc cgtttcttac ggagcctgga cggatcggat gatggagata ggaatgatcg 4800 ctattgctct tgacgagcaa ggatcatccg gttccacaag aactcaaaga ccaaagcgag 4860 ctgggcactc catggcagtc tcaacctggg agactataaa ttacccggag aaggaaaact 4920 ccgagataac tgaaaccagt caaagacaag actttaaaac tcctctccac attagtgaga 4980 gttccgaccc tctggaagtc ggtaaaggag gcatgcctct ccctgcagat gagaacatcc 5040 ccgactttgt tggcgatgat ccctggttcg aaatatccac ccgtaaatca caggaagaag 5100 aggcaatgtc acattctagt gttctcaaac ctcaattgaa gcctcctggc ctgccgaaac 5160 cacaaccggt taggacaatt agagatttcg atccaaaacc ggacttagtt gaggcatggc 5220 gacctgacgt gaaccccgga tattccaaag aagacgtggc agcagccact gtcatgtacg 5280 ggggttccgt tcacgaaggc cggtctatga ttgacaagcg tgacaaagct gtgttagacg 5340 gccgcaagcg ttggggttct tccttggcgt cctccttgac aggaggaacg cttaaggctt 5400 ctgcaaagtc ggagaagctt gctaagctca cttcgagtga gagggcgcaa ttcgagcgaa 5460 tcaagcgcca gcaaggtgcc acacgagctt cagaattctt ggaacaactt ctggctggca 5520 caaaccctga cccaaggtcc tgatgaacct ttccaaatca tcactgtcaa gcccgtgaca 5580 ttaaacgcgg aacgactccg aaaggatagg caacgagtgt tacccattgt agggttacag 5640 aaggactcct tctggcactt cggtgt 5666 //