ID AJ002447; SV 1; circular; genomic DNA; STD; VRL; 2751 BP. XX AC AJ002447; XX DT 31-MAR-1998 (Rel. 55, Created) DT 15-APR-2005 (Rel. 83, Last updated, Version 6) XX DE Cotton leaf curl Multan virus-[62] segment A, complete sequence, strain DE Pakistan XX KW AC2 gene; AC3 gene; AC4 gene; AV1 gene; AV2 gene; rep gene; coat protein. XX OS Cotton leaf curl Multan virus-[62] OC Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; OC Geplafuvirales; Geminiviridae; Begomovirus; Cotton leaf curl Multan virus. XX RN [2] RP 1-2751 RA Robinson D.J.; RT ; RL Submitted (23-OCT-1997) to the INSDC. RL Robinson D. J., Scottish Crop Research Institute, Virology, Invergowrie, RL Dundee, Scotland, U.K., DD2 5DA XX RN [3] RX PUBMED; 9568988. RA Zhou X., Liu Y., Robinson D.J., Harrison B.D.; RT "Four DNA-A variants among Pakistani isolates of cotton leaf curl virus and RT their affinities to DNA-A of geminivirus isolates from okra"; RL J. Gen. Virol. 79:915-923(1998). XX DR MD5; fda23e4732ee3529b7809964b673975a. DR EuropePMC; PMC5727119; 29234082. DR EuropePMC; PMC6451280; 30954067. XX FH Key Location/Qualifiers FH FT source 1..2751 FT /organism="Cotton leaf curl Multan virus-[62]" FT /segment="A" FT /strain="Pakistan" FT /isolate="clc62" FT /mol_type="genomic DNA" FT /db_xref="taxon:223254" FT CDS 118..483 FT /gene="AV2" FT /db_xref="GOA:Q77CG1" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:Q77CG1" FT /protein_id="CAA05420.1" FT /translation="MWDPLLNEFPDTVHGFRCMLSVKYLQLLSQDYSPDTLGYELIRDL FT ICILRSRNYVEASCRYRHFYARVESTSASELRQPIHQPCCCPHCPRHKTTGMDKQAYEQ FT EAQNVSDVQKSGCSKGL" FT CDS 278..1048 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:O72704" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:O72704" FT /protein_id="CAA05419.1" FT /translation="MSKRAADIVISTPASKVRRRLNFGSPYTNRVAAPIVRVTKQQAWT FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGVGLTHR FT IGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNSHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT CDS complement(1051..1455) FT /gene="AC3" FT /db_xref="GOA:Q77CG0" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q77CG0" FT /protein_id="CAA05423.1" FT /translation="MDSRTGEPITAAQAGNGAYIWEVPNPLYFKIISHVNRPFTTNMDI FT LTIRIQFNYNTRKALGLHKCFLTFRIWTTLHPQTGLFLRVFKTQVLKYLNNLGVISINL FT VIKAVEHVLYNVIQQTMYVDQYSEIKFKLY" FT CDS complement(1148..1600) FT /gene="AC2" FT /db_xref="GOA:O72706" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:O72706" FT /protein_id="CAA05422.1" FT /translation="MRSSSLSKDPCTQVPIKVQHREAKRRNRRRRVDLECGCSYYLSIN FT CHNHGFTHRGTHHCSSSREWRIYLGGSKSPLFQDHQPRQPSIHDEYGYTHDQDPVQLQH FT SESSGTAQVFSNLPNLDDLTPSDWSFFKGIQNPSPQISEQSRCNFN" FT CDS complement(1497..2588) FT /gene="AC1" FT /product="Rep" FT /db_xref="GOA:O72705" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:O72705" FT /protein_id="CAA05421.1" FT /translation="MAPPKRFKVQAKNYFITYPQCSLTKEEALSQIQAINTPSNKKYIK FT ICRELHEDGSPHLHVLIQFEGKFVCTNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKAYI FT DKDGDTLEWGEFQIDGRSARGGQQTANDAYAEALNAGSKSEALRVIKELAPKDFVLQFH FT NLNANLDRIFQEPPAPYISPFSPSSFDQVPEELEVWAIDNVVDPAARPLRPRSIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHFLKHFKEFMGAQRDW FT QSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNTALKNWAVKNAIFITLEGPL FT YSGTNQSTAQGSEETQQEEESRS" FT CDS complement(2129..2431) FT /gene="AC4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:Q77CF9" FT /protein_id="CAA05424.1" FT /translation="MGALISMCSSSSRANSSARITDSSTWYPQPDQHISIRTFRELNQA FT QMSRPTSTRTGTLSSGESFRSMEDQQEEDSRQPTTLTPKHLTQEVNQRLLESLRN" XX SQ Sequence 2751 BP; 699 A; 544 C; 653 G; 855 T; 0 other; accggatggc cgcgcgattt tttatgtggg cccccgagtt atgagattgc tccctcaaag 60 ctaaataacg ctcccgccca ctataagtac ttgcgcacta agttttcaaa ttcaaacatg 120 tgggatccat tgttaaacga atttcctgat acggtgcacg ggtttcggtg tatgctttct 180 gtgaaatatc tgcaactttt atcgcaggat tattcaccgg ataccctagg ttacgagtta 240 atacgggatt taatctgtat tctacgttcc cgtaattatg tcgaagcgag ctgcagatat 300 cgtcatttct acgcccgcgt cgaaagtacg tcggcgtctg aacttcggca gcccatacac 360 caaccgtgtt gctgccccca ttgtccgcgt cacaaaacaa caggcatgga caaacaggcc 420 tatgaacagg aagcccagaa tgtatcggat gtacagaagt ccggatgttc caaggggttg 480 tgaaggccca tgtaaggtac aatcttttga gtccagacat gatgttgttc atattggtaa 540 ggtaatgtgt atttctgatg ttactcgtgg tgtcggtttg acccatcgta ttggtaaacg 600 tttttgtgtc aagtcagttt atgttttagg taagatatgg atggatgaaa atattaagac 660 caagaatcat acgaattcgg tgatgttctt tttagtccgc gatcgacgtc ctgttgacaa 720 acctcaggat tttggtgagg tattcaatat gtttgacaac gaacccagta cagcaactgt 780 gaagaatagt catagggacc gttaccaggt gttgaggaaa tggcatgcaa ccgttacggg 840 tggtcaatat gctagtaagg aacaagcttt ggtcaagaag tttgtcagag ttaacaatta 900 tgttgtttac aatcaacagg aagcagggaa atacgagaat catacggaaa atgcgttaat 960 gctttatatg gcttgtactc acgctagcaa ccctgtttat gctacgttga agattaggat 1020 atatttttat gactctgtaa cgaattgata ttaataaagt ttgaatttta tttctgaata 1080 ttgatctaca tacatagttt gttggattac attgtacaat acatgttcta cagctttaat 1140 aactaaatta attgaaatta caccgagatt gttcagatat ttgaggactt gggttttgaa 1200 tacccttaaa aaaagaccag tctgagggtg taaggtcgtc cagattcgga aggttagaaa 1260 acacttgtgc agtcccagag ctttccgagt gttgtagttg aactggatcc tgatcgtgag 1320 tatatccata ttcgtcgtga atggacggtt gacgtggctg atgatcttga aatagagggg 1380 atttggaacc tcccagatat atgcgccatt ccctgcttga gctgcagtga tgggttcccc 1440 tgtgcgtgaa tccatggttg tggcagttga ttgacagata ataagaacac ccgcattcaa 1500 gatctactct cctcctcctg ttgcgtctct tcgcttccct gtgctgtact ttgattggta 1560 cctgagtaca ggggtccttc gagagtgatg aagatcgcat tctttactgc ccagtttttt 1620 agtgcggtgt tcttttcctc gtctaggaat tctttataac tgctgttggg accaggattg 1680 cagaggaaga ttgttggtat cccgccttta atttgaactg gcttcccgta ctttgtgttg 1740 gattgccagt ccctttgggc ccccatgaac tctttaaagt gtttgaggaa atgcgggtcg 1800 acgtcatcaa tgacgttata ccaggcgtcg ttactgtaga ccttgggact cagatccaga 1860 tgtccgcaca aatagttatg tggtcccagt gatctagccc acatcgtctt tcccgttcga 1920 ctatctcctt caattactat actccgaggt ctaaggggcc gcgcagcggg atcgacaacg 1980 ttatcgatgg cccaaacttc aagttcttct ggaacttgat cgaaagaaga aggagaaaaa 2040 ggagaaatat agggagccgg tggctcctga aagattctgt ctagatttgc atttaaatta 2100 tgaaattgta gtacaaaatc tttaggagct agttccttaa tgactctaag agcctctgat 2160 ttacttcctg cgttaagtgc ttcggcgtaa gcgtcgttgg ctgtctgctg tcctcctctt 2220 gctgatcttc catcgatctg aaactctccc cactcgagag tgtccccgtc cttgtcgatg 2280 taggccttga catctgagct tgatttagct ccctgaatgt tcggatggaa atgtgctgat 2340 ctggttgggg ataccaggtc gaagaatctg ttattcgtgc agacgaattt gccctcgaac 2400 tggatgagca catggagatg agggctccca tcttcgtgta actctctgca gattttgatg 2460 tattttttat tcgagggtgt gttgatggct tgaatttggg aaagtgcttc ctctttagtg 2520 agtgagcact gtggataagt gatgaaataa tttttggctt gtactttaaa acgtttgggg 2580 ggagccattg actttggtca attggagaca actgatgggc ttttactctg ggaattggag 2640 actagataca atttatagtg tctccaaatg gcatattctg taaataacta gaagttcgtt 2700 tgaaatttaa attccccttt gggctccaaa agcggccatc cgtttaatat t 2751 //