ID AJ304405; SV 1; linear; genomic RNA; STD; VRL; 3391 BP. XX AC AJ304405; XX DT 06-JAN-2003 (Rel. 74, Created) DT 06-JAN-2003 (Rel. 74, Last updated, Version 1) XX DE Cucumber mosaic virus 1a gene for replicase, isolate IPO, genomic RNA 1 XX KW 1A gene; replicase. XX OS Cucumber mosaic virus (cucumber mosaic cucumovirus) OC Viruses; Riboviria; Bromoviridae; Cucumovirus. XX RN [1] RP 1-3391 RA Chen Y.K.; RT ; RL Submitted (21-NOV-2000) to the INSDC. RL Chen Y.K., Lab. of Virology, Dept. of Plant Sciences, Wageningen RL University, Binnenhaven 11, Wageningen, 6709 PD, NETHERLANDS. XX RN [2] RX DOI; 10.1128/JVI.76.8.4119-4124.2002. RX PUBMED; 11907253. RA Chen Y.K., Goldbach R., Prins M.; RT "Inter- and intramolecular recombinations in the cucumber mosaic virus RT genome related to adaptation to alstroemeria"; RL J. Virol. 76(8):4119-4124(2002). XX DR MD5; 2f551c5a0b03b51c601c7271e0741d8d. DR EuropePMC; PMC136112; 11907253. DR RFAM; RF01084; TLS-PK3. XX FH Key Location/Qualifiers FH FT source 1..3391 FT /organism="Cucumber mosaic virus" FT /host="Alstroemeria" FT /lab_host="Nicotiana benthamiana" FT /strain="ALS" FT /isolate="IPO" FT /mol_type="genomic RNA" FT /db_xref="taxon:12305" FT CDS 96..3074 FT /gene="1a" FT /product="replicase" FT /db_xref="GOA:Q8AZL0" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR021002" FT /db_xref="InterPro:IPR022184" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q8AZL0" FT /protein_id="CAC80016.1" FT /translation="MATSSFNINELVASHGDKGLLATALVDKTAHEQLEEQLQHQRRGL FT KVYIRNVLDVKDSEVIRTRYGGKYDLHLTQQELAPHGLAGALRLCETLDCLDFFPRSGL FT RQDLVLNFGGSWVTHYLRGHNVHWCSPCLGIRDKMRHTERLMSMRKVILNDPQQFDGRQ FT PDFCTKSAAECKVQAHFAISIHEGYDMAFRGLCEAMDAHGTTILKGTMMFDGAMMFDDQ FT GFIPELKCQWRKIKSAFSEEEDATCLAAKLNSTVFSRVRNGKTLIAFDFVEESTMSYVH FT DWDNIKSFMTDQTYSFNGMTYGIERCVIYAGVMTYKIVGVPGMCPPELIRHCIWFPSMK FT DYVGLKIPASDDLVKWKTVRILLSTLRETEEIAMRCYNDKKNWMDQFKIILGVLSSKSS FT TIVINGMSMQSGERIDLNDYHYIGFAILLHTKLKYEQLGKMYDMWNASFIWKWFASMSR FT PFRVFFSTVVKTLFPTLRTREEKEFLVKLSTSVTFNEECSFDGGKEWDVISSAAFVTAQ FT AVADGTILAEEKAKKLADRLAVPVEEVSAIPEVSPTPVDQGTACGLETETSELDSLSAQ FT TRSPITRIAERATAMLEYSAYEKQLHDTTVSNLQRIWCMAGGDNTRNSLESNLKLVFDT FT YSSVDALVNVHFPTGRWMHPVPEGVVYSVGYNEKGLGPKLDSELYIVNGDCVISNSHDL FT FSITKSLLAPTGTISQVDGVAGCGKTTAIKSMFNPSTDIIVTANKKSAQDVRYALFKST FT DSKEACAFVRTADSILLNDCPTVSRVLVDEVVLLHFGQLCAVMSKLHAVRALCFGDSEQ FT IAFSSRDASFDMRFSKLIPDETSDADTTFRSPQDVVPLVRLMATKALPRGTRTKYSRWV FT SQSKVRKSVTSRAVASVSLVELDPTRFYITMTQADKASLITRAKELNLPKAFYTDRIKT FT VHESQGISEDHVTLVRLKSTKCDLFKKFSYCLVAVTRHKVTFRYEYCGVLGGDLIATCI FT PLV" XX SQ Sequence 3391 BP; 861 A; 741 C; 782 G; 1007 T; 0 other; gttttattta caagagcgta cggttcaacc cctgcctccc ctgtaaaact accctttgaa 60 ttcttcttct cgacttttct tagtttaaaa ttcctatggc aacgtcctca ttcaacatca 120 atgaactggt agcctcccac ggcgataaag gactacttgc gacagccctc gttgataaga 180 cagctcatga acagctggag gagcaacttc aacatcaacg tagaggcctt aaggtctaca 240 tccgtaatgt tttggatgta aaggactccg aagtcattcg gactcggtat ggtggtaagt 300 acgacctcca cctcacccag caggaattag ctccccatgg cctcgctggt gccctccgct 360 tgtgtgaaac tctcgattgt ctagactttt tccctcgttc aggtctgcgg caggacctcg 420 tcttaaactt cggaggaagt tgggtcacac actatcttcg cggacacaac gtacattggt 480 gctccccatg tttgggtatt cgtgacaaga tgcgtcacac tgaaagattg atgagcatgc 540 gtaaggtcat tttaaacgat ccacaacagt ttgatggccg ccagccggac ttttgcacta 600 agtctgcagc tgaatgcaaa gttcaagccc actttgctat ttctatacac gaaggatatg 660 atatggcctt tagaggttta tgtgaggcaa tggacgctca cggaactacg attttgaaag 720 ggacgatgat gttcgacggg gctatgatgt ttgacgacca aggctttatt cctgaactta 780 aatgtcagtg gcgaaaaatt aaatccgcct tttctgagga ggaggatgcc acttgtttag 840 cagctaaact caactctact gttttttcac gcgtgcgaaa tgggaaaacc ttaatcgcat 900 ttgacttcgt tgaggaatcc acgatgtctt atgttcacga ttgggataat ataaaatcgt 960 ttatgacaga tcaaacgtac tctttcaatg gtatgaccta tggaattgag cgttgtgtta 1020 tttacgctgg cgtgatgact tacaagattg ttggcgtgcc tggtatgtgt ccacccgaac 1080 tcattcgaca ttgtatctgg ttcccctcta tgaaggacta tgttggtctt aagattcccg 1140 cgtctgatga cttggttaaa tggaaaacag tccgtatttt actgtcaacg ttacgtgaga 1200 ctgaagaaat agctatgcgt tgttataacg acaagaagaa ttggatggat caattcaaga 1260 ttattctcgg tgttttatca tcgaagtcct ccacgatcgt tatcaatggt atgtctatgc 1320 aatccggtga acgtattgat ctcaatgatt atcattacat cggttttgct atccttctcc 1380 acacgaaatt aaaatacgaa caacttggga aaatgtacga tatgtggaat gcttccttca 1440 tttggaagtg gtttgcgtct atgtctagac cattccgtgt tttcttttcc actgttgtta 1500 agactttgtt tccgactctg agaacgcgcg aggaaaaaga gtttttggtc aaactttcca 1560 cttccgtcac ctttaacgag gagtgctctt ttgacggagg gaaagaatgg gacgtgatat 1620 catcagcggc tttcgtaacc gctcaggctg ttgcagatgg tactattctg gccgaggaga 1680 aagctaaaaa attagctgat cgtctggccg tgcctgttga agaagtatct gctattcctg 1740 aggtgtctcc tacacctgtt gatcagggca ctgcttgtgg actggaaaca gaaacatcgg 1800 aactggattc tctgtctgcc caaacacgtt cccccatcac acggatcgct gaaagagcga 1860 ccgctatgct tgaatattca gcttatgaga aacaattgca cgataccacc gtttcaaatc 1920 ttcaacgaat ttggtgcatg gcaggtggcg acaacacgag gaactcttta gagagtaatt 1980 tgaaacttgt gtttgacact tattcttctg ttgacgccct ggttaatgtt cactttccta 2040 ctgggaggtg gatgcaccct gtgcctgagg gcgtggtata ctctgttggt tataatgaga 2100 agggtcttgg tcctaaactt gatagtgagt tgtacatagt taatggtgat tgtgtgattt 2160 cgaacagtca tgatttgttt tcaatcacta aatctttgtt agctcccacc ggaaccatca 2220 gccaagtcga tggtgtagct gggtgcggga aaaccactgc tataaaatcc atgtttaatc 2280 cttccacaga tataattgtc acagccaaca agaaatctgc tcaagatgtg cgttatgcgc 2340 tgtttaaatc tactgactcc aaagaagctt gtgcttttgt taggaccgct gattccatat 2400 tactcaatga ttgccctacg gtgtctcgag tgcttgtgga tgaagttgtt ttgttgcact 2460 ttggtcagtt gtgcgctgtc atgtcgaaac ttcatgctgt cagagctttg tgtttcggag 2520 actccgaaca gatagccttc tcctctcgtg acgcttcgtt cgacatgcgt ttctctaagc 2580 ttattccgga tgagaccagt gatgcggaca caactttccg tagtccacaa gatgtagtac 2640 cacttgtgcg tttgatggct acgaaggctc taccgagagg gacccgtacg aaatactcaa 2700 gatgggtgtc ccaatctaaa gtgaggaagt ctgttacttc gcgtgctgtt gctagtgtat 2760 ctctagttga actggacccc accagattct atattacgat gacgcaagct gataaagcct 2820 cactaatcac tagagctaag gaactgaacc tacccaaggc attctacact gataggataa 2880 agactgtcca tgaatctcaa ggtatttcag aagatcatgt gaccctggtt aggttaaaga 2940 gtactaaatg tgacctgttc aagaaatttt cctactgctt agttgcagtt actcgacaca 3000 aggtcacctt ccgctatgag tactgtggtg tgttaggtgg ggacctaatc gctacttgta 3060 ttccgttagt ctgaacgcgg aaggtccgaa gacgttaaac tacactctct ttattgcgag 3120 tgctgagttg gtagttttgc tttaaactat ctgaagtcgc taaatccagt attggttgcg 3180 aacgggttgt ccatccagct tacggctaaa atggtcagtc atgccctaaa ggcatgccga 3240 catcttacaa ggttgtcgag gtacccttga aatcatctcc tagatttctt cggaagggct 3300 tcgtgagaag ctcgtgcacg gtaatacact gatgttacca agagtgcggg tatcgcctgt 3360 ggttttccac aggttctcca taaggagacc a 3391 //