ID AJ459383; SV 1; linear; genomic RNA; STD; VRL; 2750 BP. XX AC AJ459383; XX DT 19-DEC-2002 (Rel. 74, Created) DT 19-DEC-2002 (Rel. 74, Last updated, Version 1) XX DE Channa lucius virus VP1 gene for RNA-dependent RNA polymerase, genomic RNA XX KW RNA-dependent RNA polymerase; VP1 gene. XX OS Blotched snakehead virus OC Viruses; Riboviria; Birnaviridae; Blosnavirus. XX RN [1] RP 1-2750 RA Delmas B.; RT ; RL Submitted (30-APR-2002) to the INSDC. RL Delmas B., Sante Animale, Institut National Recherche Agronomique, Unite RL VIM, Batiment de Biotechnologies, INRA, 78350 Jouy-en-Josas, FRANCE. XX RN [2] RX DOI; 10.1128/JVI.77.1.719-725.2003. RX PUBMED; 12477876. RA Da Costa B., Soignier S., Chevalier C., Henry C., Thory C., Huet J.C., RA Delmas B.; RT "Blotched snakehead virus is a new aquatic birnavirus that is slightly more RT related to avibirnavirus than to aquabirnavirus"; RL J. Virol. 77(1):719-725(2003). XX DR MD5; 2563c09a3e2fadc4b3132dac0f7e83e7. DR EuropePMC; PMC140569; 12477876. XX FH Key Location/Qualifiers FH FT source 1..2750 FT /organism="Blotched snakehead virus" FT /host="Blotched Snakehead fish" FT /mol_type="genomic RNA" FT /country="Viet Nam" FT /note="segment B" FT /db_xref="taxon:311176" FT CDS 99..2702 FT /transl_table=1 FT /gene="VP1" FT /product="RNA-dependent RNA polymerase" FT /db_xref="GOA:Q8AZL8" FT /db_xref="InterPro:IPR007098" FT /db_xref="InterPro:IPR007100" FT /db_xref="UniProtKB/Swiss-Prot:Q8AZL8" FT /protein_id="CAD30691.1" FT /translation="MSDVFNTPHARRTITQALGLTNVSDRTQDWLLPEPWNPPMDPIKN FT SQEAAEYLQRNQYRMLKPRAIPENTPLDTSELFPHLAEFVGSGAFGTSTLVPAGSTEYI FT PRYYPTHKPEHNKPTPFGHYDVALLKQMTYQLTNGKDNPEEEGTTFRQFRDTIVEQQYG FT SGTSQGQLARLVAMKEVATGRNPNKSPKELGLSMEEIATMLEQTLPIGQPGGDEGWPSL FT TTTLSELLNPAEGMDYLPHITMKSSSGLPFIGKTKGETVTSALAICDTFLREVSECVKE FT GAMASDNQKLQKLLQDYWYLSCGLLFPKAERYEKKAWLTKTRNIWSAPFPTHLLLSTIS FT WPIMNSSKNNILNVPECVSLYGFNPFSGGMDAVVTNILAQPDETLFLIYADNIYIYMDR FT TWFSIDLEKGEANATPEHAQAVSYYLLTRGWTQDDGSPAFNATWATIAMMIAPSLVVDS FT SCLFMNLQLKTYGQGSGNAWTFLINHTLSTILVGKWIEAGQPNPRSKEFMDLEAATGIN FT FKIEREIEGLPTRLQEAMDKAVHTGFLGDGTTNPPEKEGPTVDLDLLGWSATYSRHMDM FT WVPVLDKERLLSSAAYPKGLENKDLKGKPGAEIAYKIVRNEALLMVGGWNYPLIARSLM FT ANTSAARNNLRQKGVPLDTLTRDWEKMTEFSDIFEDLPIDTKLEVTSEFLQRLNLRGER FT KQPNVNKHHLRTKGLKKCVSALKQGACRNPTTVAGLKLTAYSKSRINKAKAVFDEINNL FT PKTESDDWSDRMDDADRLMKANNLYMREARSALEDVHNSLLALSGETVKAKTPQEKSTE FT KVSNPVVGYRLPAERATGVQHALLGVGVSRPSEGALTKNARKMKKRREKARGINH" XX SQ Sequence 2750 BP; 857 A; 758 C; 688 G; 447 T; 0 other; ggaaagtgtg ggtcgactcc ccgtgacaat cggcacaggg accactctgc agtgccggct 60 gtcccggcta ctttaaaccc ccaaataata gattgaagat gagtgacgta ttcaacacac 120 cacatgctag gagaacaata acccaagcac ttggtttgac gaacgtatcg gacagaacac 180 aggactggct actaccagaa ccatggaacc cgcctatgga tcccatcaag aacagccaag 240 aggctgcgga gtacctacag cggaaccagt acaggatgct aaagccccgg gcaatacccg 300 aaaacacacc cctagacact tcagagctgt ttccacactt ggcagagttc gtaggatcag 360 gggcatttgg cacctcgaca ctggtcccgg ctgggagcac tgagtacatc ccacgatact 420 accccacaca caagcccgag cacaacaaac caacaccctt cgggcactac gacgtggcac 480 ttctcaaaca gatgacttac caacttacaa atggaaaaga caacccagaa gaggagggca 540 ccacgtttag gcagttcagg gacaccatag tggaacaaca atacgggtcc ggaaccagtc 600 aggggcaact agccaggcta gtcgccatga aggaagtagc aacagggagg aaccccaaca 660 agtcccccaa agaactaggg ctctcaatgg aggagattgc aactatgcta gagcaaactc 720 tgcccattgg acagcccggg ggggacgaag ggtggccatc cctgacaaca accctcagcg 780 agctcctgaa cccagctgag ggaatggact acctcccgca cattacaatg aagtcatcat 840 caggactccc cttcattgga aaaaccaagg gagagacagt gacatctgca ctggccatct 900 gtgacacatt cctaagagag gtctcggagt gtgtcaaaga gggagctatg gccagcgaca 960 accagaaact acagaagctc ctacaagact actggtacct ctcctgcggg ctattattcc 1020 cgaaggccga gaggtacgag aagaaggcct ggctgaccaa aacaaggaac atctggtcag 1080 cccccttccc aacccacctt ctgctctcca cgataagctg gcccataatg aactcatcaa 1140 agaataacat cctaaatgtg ccagaatgcg tgtccctata cgggttcaac ccattctcag 1200 gcggaatgga cgccgttgtg acgaacatac tggcacaacc agatgagacg ctttttctaa 1260 tctatgctga caacatttac atctacatgg ataggacatg gttcagcata gacctagaaa 1320 aaggagaagc caacgcaaca ccagaacacg cccaggcagt gtcctactac ctattgacca 1380 gaggctggac tcaagacgat gggtccccag ccttcaatgc cacctgggca accatagcaa 1440 tgatgattgc gccctccctg gtagtggact caagctgcct gttcatgaac ctgcaactaa 1500 agacatacgg gcaaggaagt ggaaatgcat ggacatttct gatcaaccac acactctcaa 1560 ccattcttgt tgggaagtgg attgaggctg gtcaaccaaa cccaaggtca aaagagttca 1620 tggacctaga agccgcaact ggcatcaact ttaaaataga gagagagatc gagggcctgc 1680 caaccagact acaggaggcg atggacaagg cagtgcacac aggcttccta ggcgacggga 1740 ccacgaaccc cccagagaaa gaagggccca cagtggacct cgacctactg gggtggtccg 1800 ccacgtactc gcgtcacatg gacatgtggg tcccagtcct ggacaaagag aggctcctga 1860 gctcagcagc ctaccccaag ggacttgaga acaaagacct aaaaggaaag cccggggccg 1920 agatagccta caaaatagtc agaaacgaag cactgctgat ggttgggggc tggaactatc 1980 ctctgatagc ccgctcacta atggccaaca cgagcgcagc aagaaacaac ctcagacaaa 2040 agggggtgcc tctggacact ctgacaagag actgggaaaa gatgacggaa ttctcagaca 2100 tcttcgaaga cctaccaata gataccaaac tagaggtgac atcagagttc ctacagaggc 2160 taaatctacg aggagagcgg aaacaaccaa acgtcaacaa gcaccacctt agaacaaagg 2220 ggctaaagaa atgcgtctca gctctgaaac aaggcgcctg caggaaccca acgacggtgg 2280 cggggctaaa gctgacggcc tactccaaat caaggattaa caaagccaag gccgtatttg 2340 acgaaataaa caacctacca aaaaccgagt cagatgactg gtctgacagg atggacgacg 2400 cagacagact catgaaggcc aacaacctgt acatgaggga agcccggtct gcactggaag 2460 acgtccacaa ctccctacta gccctgtcgg gagaaacagt gaaagccaag acaccgcaag 2520 agaaaagcac cgaaaaggtc tccaacccgg tggtcgggta ccgcctacca gcggagcgtg 2580 caactggcgt tcagcacgct ctccttggag taggagtatc aagaccatcg gaaggggcac 2640 tcacaaagaa cgcgcgtaag atgaagaaga ggagggaaaa agcgcgggga atcaatcact 2700 aacgtagcca ccaagtcgac ccacttcctg attccggaca gcaggtccca 2750 //