ID AJ633822; SV 2; linear; genomic RNA; STD; VRL; 5823 BP. XX AC AJ633822; XX DT 05-JUL-2005 (Rel. 84, Created) DT 05-JUL-2005 (Rel. 84, Last updated, Version 1) XX DE Lily virus X complete genome, genomic RNA XX KW coat protein; complete genome; replication protein; triple gene block. XX OS Lily virus X OC Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus. XX RN [1] RC revised by author [30-MAR-2004] RP 1-5823 RA Adams M.J.; RT ; RL Submitted (22-MAR-2004) to the INSDC. RL Adams M.J., Plant Pathogen Interactions Division, Rothamsted Research, RL Harpenden, Herts, AL5 2JQ, UNITED KINGDOM. XX RN [2] RX DOI; 10.1007/s00705-004-0441-5. RX PUBMED; 15578239. RA Chen J., Shi Y.-H., Adams M.J., Chen J.-P.; RT "The complete sequence of the genomic RNA of Lily virus X (genus RT Potexvirus)Chen, J., Shi, Y.-H., Adams, M.J., Chen, J.-P.;"; RL Arch. Virol. 150(4):825-832(2005). XX DR MD5; 30e192cc37891071aeb852c7b78ceb0e. DR EuropePMC; PMC5786675; 29371349. XX FH Key Location/Qualifiers FH FT source 1..5823 FT /organism="Lily virus X" FT /mol_type="genomic RNA" FT /country="Netherlands" FT /db_xref="taxon:12194" FT 5'UTR 1..73 FT CDS 74..3970 FT /product="replication protein" FT /note="ORF1" FT /note="multi-functional protein" FT /db_xref="GOA:Q4LD46" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q4LD46" FT /protein_id="CAG24007.1" FT /translation="MALISQALDRFTDVSLKAVIQEEQLQNLRTTLRQANTIMPYAAST FT SAATALESLGILTNPYSVSLHTHAACKAIENQLLAIVGRLLPQSPVTFYFLKRSKLNAL FT GRNPRLKDVFNNATIEPRDFARYEPDTLREHLVAPTTPIVYISDTLHFLPMSFVASLFA FT HNPVVQTLYATVVLPPEALYKHPTQLPDIYSINYDYGGFQYIPGAHGGGAYHHEFSTLD FT WLKVGHILNKGSGEYVTCQMIESLGANHLMVFRRGKLLTPRVRTFRKDEYVLLPKLFHP FT KQANSSKPIAMTFAMQLLLYVKSIKEVTFRDVCAKIRQLIPTSELHRHQPDEIIHIANF FT FYFVGHRDAICHSHHLMDDGIITQGFHEIMARVKTVWEKVFGRSHFSQVIALLEWKTFT FT YSIEPETFTVDDKNPLAQLTNGEADPWQLPTVDDVGDNGDDEVELIEKLPCAPTTTPVA FT PAATTGDELPWSQCAHILQSCGFRGDQRQYKDGELIYPIESILQLPNEPCPKAPAGLIS FT KLESLRRHAVLVTLSPARGHAFASDVKNNRIGMCTRNESTEWKKNFDTRVELGQRTIPV FT IVIHGAGGSGKSYAIQDFLRTQSHGYDKVGLVLPTVELRADWMAKIPKMSERHFRTYEK FT ALIQHSPGTVVMDDYTKLPAGYIEAFCLFHPEVHTLILTGDPKQTSHHETNDQALIAHL FT EPAHVVFSSHCRYYLNATHRNRQDLANMLGVYSETSGVTRITCSSLVMGGWPIIAPSLA FT KKTCLTELGHRAYSYAGCQGLTTPSVQVLLDNNTPLCSPAAMYTTLSRARDAIHFINTG FT PDSREQWAKLDATPYLKTFLDLARGVAAQRVTPPAASEPAPVPPPVTHFPVENRDMLLE FT PLIAQLPDKYDRELRDSRHGYTNAIQTDDTVVQLFQHQQAKDEALLFQTIEARIKLATP FT ADNEKEMLMKRDIGDILFLNYQKAMKLPVDPIPFSKELWQACREEVQDKYLQKPLANLI FT NGKDRQSPDFPKDKIALFLKSQWVKKTEKIGAIKVKPGQTIASFMQDTVMVYGTMARYM FT RRIRRAYQPDNIFITCENTPEELNEWAMEKWCFRGNAHSNDFTAFDQSQDGAMLQFEVL FT KAKHHCIPPDIIESYIMLKTNAHIFLGTIAIMRMSGEGPTFDANTECAIAYHHTKYQVE FT QGTAQLYAGDDMAQDTTPILKPSFRLIADGIELKSKEVTHTQVPGEYATFCGWCVTPKG FT IIKEPRKLFASLQLAKHIGKTAEVKTNYAHDLAHAYRLGDELQDVLTPDEAAFHQATVR FT DLVTMGGVDFQWHP" FT CDS 4000..4650 FT /product="triple gene block protein 1" FT /note="ORF2" FT /db_xref="GOA:Q4LD45" FT /db_xref="InterPro:IPR027351" FT /db_xref="UniProtKB/TrEMBL:Q4LD45" FT /protein_id="CAG24008.1" FT /translation="MEFCGGTLRTRFQRTSVPNSPVTVVHTVAGSGKTTFIRNLLIDHP FT QLVARTYGTPDVPNLLGYGIRDRHGDAHIVDEYPAADLRSHPPVSIVFADPLQHHGEVR FT PAHFTCSHTHRFGKSTCSLLGTLGVYCTSDKEDSVTFAGAYLAEPVGTLIALGEDAELV FT LDNHRVEYFTPCQALGLTFPSVTLLTDAPIEDQPPVSRYIALTRHTDSLLILN" FT CDS 4650..4976 FT /product="triple gene block protein 2" FT /note="ORF3" FT /db_xref="GOA:Q4LD44" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:Q4LD44" FT /protein_id="CAG24009.1" FT /translation="MPLTPPPDYTKPFIAVVVGGTLAAFVLLLTRNTLPHTGDNLHSLP FT HGGTYCDGTKRIRYGGPHRSHVPELPAKSWALITVVAILIALHFSCLRTHRVHRCVLCH FT TTSG" FT CDS 4894..5130 FT /transl_except=(pos:4894..4896,aa:Met) FT /product="triple gene block protein 3" FT /note="ORF4" FT /note="lacks standard AUG start codon" FT /db_xref="GOA:Q4LD43" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/TrEMBL:Q4LD43" FT /protein_id="CAG24010.2" FT /translation="MYSSPYILAAYALIAFTAVCYVTQPAAETCYIEVTGHNAVIRGCV FT NVPHLPEVVPALAPASGLSCQKFRNHHYDDLCS" FT CDS 5111..5716 FT /product="coat protein" FT /note="ORF5" FT /db_xref="GOA:Q4LD42" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/TrEMBL:Q4LD42" FT /protein_id="CAG24011.1" FT /translation="MTTFVPDAKTWADTAYTAQSESVATAEELQSIATLWEGIGIPAAN FT FFDVAFQLAMRCSDGHASSLTVLSGNCTVAPTVTLKAAAGLVKAVLPLRQFCRYYAKFV FT WNWRLSHDLPPANWADSQFPAEARFAAFDFFDGVTNSAAPQPPDGLIRPPTELELSAAQ FT TAKFAALARVRGSGFVTTAAEITHGRAEVSRTMLLSPP" FT 3'UTR 5717..5823 XX SQ Sequence 5823 BP; 1456 A; 1769 C; 1344 G; 1254 T; 0 other; ggaaaactaa acgaaacaaa tcgactcggc caacccgtaa cgtactcaaa tctcccacga 60 gctagactac gtaatggctt tgatatcaca ggccctcgat agattcacag acgtgtccct 120 caaggcagtg atccaggagg aacaattaca gaacctccgc accacactgc gccaggcgaa 180 caccatcatg ccgtatgctg cgtccacatc agcagcaacc gctcttgaat ccctagggat 240 actgacgaac ccatactcag tatctctcca cacccatgcc gcctgtaaag ccatcgaaaa 300 ccagttgctg gcaatcgttg gccgactact cccgcaaagt cctgtcacct tctacttcct 360 aaagcgttcc aaactcaacg ctctaggtcg aaaccctcgg ctcaaagacg tctttaacaa 420 cgccaccatt gagccccgcg actttgcccg ctacgagcca gatacccttc gggaacacct 480 cgtagccccg accacgccca tcgtatacat atccgacact ctccactttt taccgatgag 540 cttcgtggcc tcacttttcg cccacaaccc ggtggtacaa accctatacg ccaccgtggt 600 acttcctcca gaggccctgt acaagcatcc aacgcaactg ccggacatat actctatcaa 660 ttatgattac ggcggcttcc agtacatccc tggagctcat ggtgggggag cctaccacca 720 tgaattctcg actttagatt ggctcaaggt cgggcacata ctcaataaag ggagtggtga 780 gtatgtgact tgtcagatga tagagtccct tggggccaat catctgatgg tttttaggcg 840 tgggaaactc ctcactccca gggtgaggac attccggaaa gacgagtacg tgctactccc 900 caaacttttc caccctaagc aagccaactc ttccaagccc atagctatga ccttcgctat 960 gcaattactt ctatacgtga agagtattaa agaggtcacc ttccgcgacg tctgcgcgaa 1020 aatcaggcag ctcataccca cttctgagct ccacagacat caacccgacg aaataattca 1080 catagcgaat tttttctact tcgtcgggca ccgagatgcc atctgccaca gccatcatct 1140 tatggacgat ggcatcatca cgcaaggatt ccacgaaatc atggctagag tcaagacggt 1200 ctgggagaag gtcttcggca gatcacactt ctcccaggtc atcgccctac tagagtggaa 1260 gaccttcacc tactccattg agcccgaaac cttcactgta gatgacaaga atccgttggc 1320 tcaacttact aatggagagg ccgacccatg gcaacttccc acggtggatg acgtcggcga 1380 caacggggat gatgaggtgg agctgattga gaagcttccg tgcgcgccca cgacgactcc 1440 agtggcaccg gccgcaacca cgggcgacga actcccttgg tcccaatgtg cacacatact 1500 gcaatcatgc ggtttccgag gggaccaacg gcagtacaaa gatggggaat tgatataccc 1560 cattgagtcc atactccagc tgccaaatga accatgccca aaagccccag ctggtttaat 1620 aagcaagtta gagagcttgc gccgccacgc cgtgctagtg actctctctc ccgcacgcgg 1680 ccatgccttc gcctctgacg ttaaaaacaa taggataggc atgtgcacgc gtaatgagtc 1740 taccgagtgg aagaaaaact tcgacactcg tgttgaactc ggccaacgca ccattcccgt 1800 gattgtcatc cacggtgcgg gtggctctgg aaagtcctat gccattcagg actttctacg 1860 tacccaatct cacgggtatg ataaggtggg cttggtgctg cccaccgtgg agctgagggc 1920 cgattggatg gccaagatac cgaaaatgtc tgaaagacat ttccggacct atgagaaggc 1980 cctcatccag cactcgcccg gcactgtggt catggacgac tacactaaac tgcctgccgg 2040 atacattgag gcgttctgct tattccaccc agaggtccac accctgatac ttaccgggga 2100 ccctaagcag acatcacacc acgagacgaa cgaccaggct ctcatagcac atctagagcc 2160 tgcccacgtc gtgttctcgt cacactgtag atactacctg aacgccaccc atcgcaaccg 2220 ccaagacttg gcgaacatgc taggcgtcta cagtgaaacc agtggggtga ctcgcatcac 2280 ctgctcctca ctggtcatgg gagggtggcc cattatcgcg ccatccttgg caaagaaaac 2340 ctgccttact gagttgggcc atcgcgctta ttcatacgca ggttgtcaag gactcaccac 2400 cccctctgtg caggtgttgc tggacaacaa cacccccctt tgctcccctg ctgccatgta 2460 cacgacacta tcccgggccc gggacgccat tcatttcatc aacacgggcc cggactctag 2520 ggaacagtgg gcaaagctgg atgccacccc gtacctcaaa acgttcttag acctggcgag 2580 gggtgtggcc gcacagagag taactccacc agcagcgtct gaacccgccc cagtcccacc 2640 gccagtcacc cacttcccag tggaaaatag ggacatgctg ctggagccac tgattgccca 2700 actgcctgac aagtacgacc gtgagctacg tgactcacgc catggctaca ccaatgccat 2760 tcagactgat gacacagtcg tacaactctt ccagcaccag caggctaaag atgaggccct 2820 actgttccaa actatagagg cccggatcaa gctggccaca ccagctgata acgagaaaga 2880 aatgcttatg aaacgggaca ttggggacat actgttcctc aattaccaaa aggccatgaa 2940 actgcccgtc gacccaattc ctttctccaa agaattgtgg caagcatgcc gtgaggaggt 3000 ccaggacaaa tacctgcaga aacccttagc caacctcatt aacggcaaag accgccagtc 3060 ccccgatttt cctaaagaca agatagcgct cttcctgaaa tcacaatggg ttaaaaagac 3120 tgagaaaatc ggggccatca aagttaaacc tggacagact atcgcgtctt tcatgcagga 3180 cactgtcatg gtctatggca ccatggcaag atacatgaga cgcattcgca gggcttatca 3240 acctgataat atcttcatca cctgcgagaa tacacctgaa gagctcaatg agtgggctat 3300 ggagaagtgg tgcttcaggg gaaatgccca ctccaacgat ttcaccgcct tcgatcaatc 3360 tcaggacgga gcgatgctcc aatttgaagt gctgaaggcg aaacatcact gcataccgcc 3420 agacatcatt gagtcttata tcatgctcaa gaccaatgcg cacatctttc tgggcactat 3480 cgctataatg cggatgtcag gcgaaggacc cacctttgac gccaacacgg aatgtgccat 3540 cgcttaccac catacaaaat accaggtgga gcagggcacc gcccaactct atgcgggcga 3600 cgacatggct caggacacaa caccgatcct taagccatcc tttagactta tcgctgacgg 3660 gatcgagctg aagtctaaag aggtcaccca tacgcaagtt cctggggagt acgccacctt 3720 ctgcgggtgg tgcgttacac ctaagggtat catcaaagaa cccaggaaac tctttgcctc 3780 actccaactg gctaagcaca ttggcaagac tgcagaagtc aaaacaaatt acgcccatga 3840 cttggcccat gcataccgcc tcggtgatga gctgcaagat gtcctcaccc ctgatgaggc 3900 cgccttccac caagctactg tcagagactt ggtgaccatg ggaggcgtcg acttccaatg 3960 gcacccctaa agaaggggtt aagttaccgc tgattttgaa tggagttttg cggcggtaca 4020 ctacgaactc gtttccagcg caccagcgtt cctaattcac ctgtcactgt cgtgcacacc 4080 gtagctggaa gcggaaagac cacattcatc aggaacctcc tgattgacca tccacaacta 4140 gttgcgcgga cttacggcac cccagacgta cctaatcttc taggttacgg catccgcgac 4200 cgtcacggtg acgctcacat cgtcgacgag tatcctgctg cagacttgag gtcacaccca 4260 cctgtctcaa ttgtctttgc tgacccactg cagcatcacg gcgaggtcag gcccgcccat 4320 ttcacctgct ctcacacgca caggttcggc aagtccactt gttcgctact cggcaccctc 4380 ggagtttact gcacatctga taaagaggac tctgtcactt tcgccggggc atatctcgcc 4440 gagcctgtgg gcaccttaat tgcgttaggt gaagacgctg agctcgtact cgacaaccac 4500 agagtcgagt attttacccc gtgtcaagcg ctaggcttaa ctttcccgtc tgttaccttg 4560 ttgacagacg cacctatcga agaccaacca cccgtctctc ggtacattgc cttgacacgg 4620 cacactgatt cactgctgat tctcaactga tgcctctcac cccaccacca gactacacaa 4680 agccttttat tgcagttgtg gttggaggca ctctagcagc tttcgtactg ttactcacgc 4740 gcaacaccct cccacacaca ggagacaatt tacacagtct gcctcacgga ggaacctatt 4800 gcgacggtac gaaacgaatc aggtacggcg gtccacaccg ctcacacgtc ccagaactac 4860 ccgccaagtc ctgggccctc atcaccgtcg tggctatact catcgcccta cattttagct 4920 gcctacgcac tcatcgcgtt caccgctgtg tgttatgtca cacaaccagc ggctgaaacg 4980 tgctacattg aggtaactgg gcacaacgcg gtgataagag gttgcgtcaa cgtgccgcat 5040 ctaccagagg tcgtcccagc tttagcccca gcatcggggt taagttgcca gaaatttcga 5100 aatcatcact atgacgacct ttgttcctga cgccaagact tgggctgaca ctgcctacac 5160 agcccagtct gagagtgtag ccaccgctga ggagctacaa tccattgcca cactgtggga 5220 agggattggc atacctgctg ccaatttctt cgatgtggcg ttccagctgg ccatgcgttg 5280 tagcgatggg catgccagct cactcacagt gttgtcagga aactgcactg tggccccgac 5340 agtgaccctc aaggccgctg ccgggctggt taaggctgtg ctaccattac gacaattttg 5400 tcgttattat gccaagttcg tctggaactg gcgccttagc catgacctgc cgccagccaa 5460 ctgggccgac tcccaattcc ctgcggaagc gcgctttgcc gctttcgatt tcttcgatgg 5520 agtcaccaac tctgctgctc cccaaccgcc tgatggcctc atccgaccac cgactgaact 5580 tgagctctcc gcggcccaaa ctgctaagtt tgcggcccta gctcgtgtcc gtggttctgg 5640 ttttgtcaca actgcagctg agattaccca tggccgagcg gaggtgtcta ggacaatgct 5700 actgtcccca ccctagacac caataaccgc gagcagggac tcgtccaggt atagcctggt 5760 tcaaccctag cccaccatac actaaactta atcaactgtg tgggcgaaac tcccaagaga 5820 gtt 5823 //