ID AJ865382; SV 2; linear; genomic RNA; STD; VRL; 3054 BP. XX AC AJ865382; XX DT 08-DEC-2004 (Rel. 82, Created) DT 22-APR-2005 (Rel. 83, Last updated, Version 2) XX DE Cucumber mosaic virus segment RNA 2 complete sequence XX KW 2a gene; replicase. XX OS Cucumber mosaic virus (cucumber mosaic cucumovirus) OC Viruses; Riboviria; Bromoviridae; Cucumovirus. XX RN [1] RC revised by [3] RA Mahinghara B.K.; RT ; RL Submitted (24-NOV-2004) to the INSDC. RL Mahinghara B.K., Plant Virus Lab., Floricilture Division, Institute of RL Himalayan Bioresource Tech., Post Box no 6, Himachal Pradesh, INDIA. XX RN [2] RA Mahinghara B.K., Hallan V., Zaidi A.A.; RT "Variability in the genome of Cucumber mosaic virus infecting Lilies in RT India"; RL Unpublished. XX RN [3] RP 1-3054 RA Mahinghara B.K.; RT ; RL Submitted (10-MAR-2005) to the INSDC. RL Mahinghara B.K., Plant Virus Lab., Floricilture Division, Institute of RL Himalayan Bioresource Tech., Post Box no 6, Himachal Pradesh, INDIA. XX DR MD5; 38604049b595a2b90d94999797a8f274. DR RFAM; RF01084; TLS-PK3. XX CC Related entries AJ865383 and AJ865384 XX FH Key Location/Qualifiers FH FT source 1..3054 FT /organism="Cucumber mosaic virus" FT /segment="RNA 2" FT /host="Lilium longiflorum" FT /isolate="Palampur" FT /mol_type="genomic RNA" FT /country="India:Himachal Pradesh" FT /clone="1" FT /db_xref="taxon:12305" FT CDS 85..2403 FT /gene="2a" FT /product="replicase protein" FT /db_xref="GOA:Q5QQK8" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:Q5QQK8" FT /protein_id="CAI30263.2" FT /translation="MAFPAPAFSLANLLNGSYGVDTPEEVERLRAEQREEAAAACRNYR FT PLPAVDVSESVTEDAHSLRTPDGAPAEAVSSEFVTYGAEDYLEKSDDELLVAFETMVKP FT MRFGQLWCPAFNKCTFISSIAMARVLLLAPRTSDRTMKCFEDLVAAIYTKSDFYYDEEC FT EADDVQTDISSRDVPGYSFEPWSRTSGFEPPPICEACDMIMYQCPCFDFNALKKSCAER FT TFADDYVIEGLDGVVDNATLLSNLGPFLVPVKCRYEKCPTPTIATPPDLNRATDRVDIN FT LVQSICDSTLPTHSNYDDSFHQVFVESADYSIDLDHVRLRQSDLIAKIPDSGHMIPVLN FT TGSGHKRVGTTKEVLTAIKKRNADVPELGDSVNLSRLSKAVAERFFISYINGNSLASSN FT FVNVVSNFHDYMEKWKSSGLSYDDLPDLHAENLQFYDHMIKSDVKPVVSDTLNIDRPVP FT ATITYHKKSITSQFSPLFTALFERFQRCLRERIFLPVGKISSLEMAGFDVKNKHCLEID FT LSKFDKSQGEFHLLIQEHILNGLGCPAPITKWWCDFHRFSYIRDRRAGVGMPISFQRRT FT GDAFTYFGNTIVTMAEFAWCYDTDQFEKLLFSGDDSLGFSLLPPVGDSSKFTTLFNMEA FT KVMEPAVPYICSKFLLSDEFGNTFSVPDPLREVQRLGTKKIPYSDNDEFLFAHFMSFVD FT RLKFLDRMSQSCIDQLSIFFELKYKKSGEEAALMLGAFKKYTANFQSYKELYYSDRRQC FT ELINSFCTPEFRVERVNSN" XX SQ Sequence 3054 BP; 765 A; 693 C; 712 G; 884 T; 0 other; gtttatttac aagagcgtac ggttcaatcc ctgcctcccc tgtaaaactc cctagacttt 60 aaatctcttt ctagtatctt tctcatggct ttccccgccc ccgctttctc actagccaat 120 cttttgaacg gcagttacgg tgtcgacact cccgaggaag tggaacgttt gcgagctgag 180 caacgtgaag aggctgctgc ggcctgtcgt aactacaggc ccctacccgc tgtggatgtc 240 agcgagagtg tcacagagga tgcgcattcc ctccgaactc ctgacggagc tcccgctgaa 300 gcggtgtcaa gtgagtttgt tacttatggt gctgaagatt accttgaaaa atctgatgat 360 gagctccttg tcgcttttga gacgatggtc aaacccatgc gcttcggaca actatggtgc 420 cccgcgttta ataaatgtac ttttatttcc agcattgcta tggccagagt tttgctgttg 480 gcacctagaa catccgaccg aaccatgaag tgttttgaag acctagtcgc ggctatttac 540 actaaatccg acttctatta cgatgaagag tgtgaagccg acgacgttca gacagatatc 600 tcgtctcgcg atgtacccgg ctattctttc gagccgtggt cccgaacgtc tggattcgaa 660 ccgccgccta tttgtgaggc gtgcgacatg atcatgtacc agtgcccgtg ttttgatttc 720 aatgctttga agaaatcgtg cgctgagagg actttcgctg atgattatgt tattgaagga 780 ttagatggtg ttgttgacaa tgcgactttg ttgtccaatt tgggtccatt tttggtaccc 840 gtgaaatgtc gatatgaaaa atgtccaaca ccgaccatcg cgactcctcc ggatttaaat 900 cgtgctactg atcgtgttga tattaatctg gttcaatcca tttgtgactc gactctgccc 960 actcacagta attacgacga ctcttttcat caggtgtttg tcgaaagcgc agattactct 1020 atagatctgg atcatgttag acttcgacag tctgatctca ttgcaaaaat tccagattca 1080 gggcatatga taccggttct gaataccggg agcggtcaca agagagtagg tacaacgaag 1140 gaggtcctta cagcaattaa gaaacgtaat gctgacgttc cagagctagg tgattccgtt 1200 aatctgtcta gattgagtaa agctgtggct gagaggtttt tcatttcgta catcaatggt 1260 aactctctag catccagtaa tttcgttaat gtcgttagta atttccacga ttacatggaa 1320 aagtggaagt cttcaggtct ctcttatgat gatcttccag atcttcatgc tgagaatttg 1380 cagttttatg atcacatgat aaaatctgat gtgaaacctg ttgttagcga cacgctcaat 1440 atcgacagac cggttccagc tactataacg taccataaga agagtataac ctcccagttc 1500 tcaccgttat tcacagcgct atttgagcgc ttccagagat gccttcgaga acgtattttt 1560 cttcctgttg gtaagatttc atctcttgag atggcggggt tcgatgttaa aaacaagcac 1620 tgtctcgaga ttgacttgtc taaatttgat aagtctcaag gtgaattcca tttgctaatt 1680 caggaacaca ttttgaatgg tctaggatgc ccagctccga taaccaagtg gtggtgtgat 1740 ttccaccgat tctcttacat tagagatcgt agagctggtg ttggtatgcc tatcagtttc 1800 cagagacgaa ccggtgatgc gttcacttac tttggcaata ccatcgtcac catggctgag 1860 ttcgcctggt gttatgacac cgaccaattc gaaaagcttt tattctcagg cgatgattct 1920 ctgggatttt cattgcttcc ccctgttggt gattcgagta aattcacaac tcttttcaac 1980 atggaagcta aggtgatgga acctgccgta ccatatattt gttcgaagtt cttactctct 2040 gacgagttcg gtaatacatt ttccgttcca gatccattgc gcgaggttca gcggttagga 2100 acaaagaaaa ttccctattc tgacaatgat gaattcttgt ttgctcactt catgagcttt 2160 gttgatcgat tgaagttttt ggaccgaatg tctcagtcgt gcatcgatca actttcgatt 2220 ttcttcgaat tgaaatacaa gaagtctggg gaagaggctg ccttaatgtt aggcgccttt 2280 aagaaatata ccgctaattt tcagtcctac aaagaactct actattcaga tcgtcgtcaa 2340 tgcgaattga tcaattcgtt ttgtacccca gagtttaggg ttgagcgtgt aaattccaac 2400 taaacagcga aagaaatatg gaattgaacg cgggcgcaat gacaaacgtc gaactccaac 2460 tggctcgtat agtggaggcg aagagacaga gacgaaggtc tcacaagcag aatcgacggg 2520 aacgaggtca caaaagtccc agcgagagag cgcgttcaaa tctcagactg ttccgcttcc 2580 taccattctt tcaagtagat ggtccggaac tgacagggtc atgccgccat atgaacgtgg 2640 cggagttacc cgagcctgag gcctctcgtt tagagttatc ggcggaagac catgattttg 2700 acgatacaga ttggttcgcc ggtaacgaat gggcggaagg agccttctga acctcccctt 2760 ccgcacctcc ctccagtttc atggcgggag ctgagttggc agtattgctc taaactgtct 2820 gaagtcacta aaacacagtg tgtcactgta cacattgtgg tgaacgggtt gtccatccag 2880 cttacggcta aaatggtcag tcgtggagaa atccacgcca gtagacttac aagtctctga 2940 ggcacccttg aaaccatctc ctaggtttct tcggaaggac ttcggtctgt gtcaatgtgc 3000 tagtttaggg tacgggtgtc ccccactttc gtggggcttc cacaaggagg acca 3054 //