ID AM087550; SV 1; linear; genomic RNA; STD; VRL; 2332 BP. XX AC AM087550; XX DT 29-JUN-2006 (Rel. 88, Created) DT 29-JUN-2006 (Rel. 88, Last updated, Version 1) XX DE Ophiostoma mitovirus 3b RdRp gene for RNA-dependent RNA polymerase, genomic DE RNA XX KW RdRp gene; RNA-dependent RNA polymerase. XX OS Ophiostoma mitovirus 3b OC Viruses; Riboviria; Narnaviridae; Mitovirus; unclassified Mitovirus. XX RN [1] RP 1-2332 RA Buck K.W.; RT ; RL Submitted (25-SEP-2005) to the INSDC. RL Buck K.W., Biology, Imperial College London, Sir Alexander Fleming RL Building, London, SW7 2AZ, UNITED KINGDOM. XX RN [2] RX DOI; 10.1007/s11262-005-0029-5. RX PUBMED; 16791417. RA Doherty M., Coutts R.H.A., Brasier C.M., Buck K.W.; RT "Sequence of RNA-dependent RNA polymerase genes provides evidence for three RT more distinct mitoviruses in Ophiostoma novo-ulmi isolate Ld"; RL Virus Genes 33(1):41-44(2006). XX DR MD5; dc4c4356b8b95ee0230fc6119edc334f. XX FH Key Location/Qualifiers FH FT source 1..2332 FT /organism="Ophiostoma mitovirus 3b" FT /host="Ophiostoma novo-ulmi" FT /isolate="Ld" FT /mol_type="genomic RNA" FT /country="United Kingdom" FT /db_xref="taxon:348096" FT CDS 31..2247 FT /transl_table=4 FT /gene="RdRp" FT /product="RNA-dependent RNA polymerase" FT /db_xref="GOA:Q18L78" FT /db_xref="InterPro:IPR008686" FT /db_xref="UniProtKB/TrEMBL:Q18L78" FT /protein_id="CAJ32468.1" FT /translation="MKNLFTIQRKAVIKNSTTRLPNHLWLGYVKVLVWLYDIPSAHRTY FT FFELLNRIQSLRRNSGDTWTVGYLKESHRLSSHWLSGNPDVCSGSIRVSVRGLPLIIPG FT RLRNAIYSRNNINITRALLTLLSTFRVMSAKPKLKLSTITDPFNGVNETLPSLEVSRAL FT KNILQGNKFVFKKEDINDPYSVNRLMDITKAGPNGGVSLRNVIIDAYALMKHPKVYASL FT LELSNVMSPYLGLLLRNQTTIIRAITDFDPIKWERIKPFMAPVYQSIKDQTLNLIPDLS FT CIGKLSTKEEAAGKVRVFAMVDIWTQSILNPLHKKIFSIIRELPTDGTFDQLKPLDRLH FT ELSTQDRFSFDLSAATDRLPLTLQKDILTLLVSPSFAEAWGTALVGRPYKLKFGTTEDE FT LMYSVGQPMGALSSWGMLALTHHTIVQVAASRAGYKDLFLDYALLGDDICIANKAVADN FT YLLIMHDLGVEINLSKSLISSTGVVEFAKRWRVGQTDVSPASPALITRLLSNMNYFPVL FT ILDLVNRGVKTIQNSEKLLSLPDSLQKIKKSITFSLIPYYDPEFAKCLLPLKGKDKSFS FT QEELFALYVHTDRIFNKLGLLEFHKAKDGDQENSKLSQSYLYNILDNSELPLPAITSQI FT DNILIAQMKTITNVPIRNWLDNRDINLLTFECWHSYLIDTLSELSSISKVVPDYTIIKD FT NEKPDNLEMRRNLLFMQELIKDLKKWNPGIFEIIPESILKEEEV" XX SQ Sequence 2332 BP; 804 A; 384 C; 384 G; 760 T; 0 other; tatagtcaac tttaatttaa ttataaacaa atgaaaaatt tatttacaat acaaagaaaa 60 gctgttataa aaaatagtac tacacgttta cctaatcatt tatgattagg atatgtgaag 120 gtactagtat gattgtatga tataccaagc gcacatcgaa cctatttctt tgaacttctt 180 aacagaattc aaagtcttag gcggaacagc ggtgatactt gaactgtagg atatcttaaa 240 gaatcccata gattaagttc tcactgacta tcaggaaatc ctgatgtctg ttccgggtca 300 attcgagttt ctgtacgagg actacctttg attattccag gtagattaag aaatgctatt 360 tattctcgta ataatattaa tattactcga gcattattaa cactcttatc tactttccga 420 gtaatgtctg ctaagcctaa attaaaactt agtacgataa cagacccatt taatggagtt 480 aacgaaactc ttccttcatt ggaagtttct cgtgctctaa aaaatatatt acaaggaaat 540 aagttcgtct ttaagaaaga ggatattaat gatccttatt ctgtaaatag acttatggac 600 ataacaaaag caggtcctaa tggtggtgta tcacttcgga atgttatcat tgatgcttat 660 gcattaatga aacatcctaa ggtatatgct tcactattag aattatccaa tgtaatgtct 720 ccatacttag gattattgtt gagaaatcaa acaacaatca taagagcgat tactgatttc 780 gatcccatta aatgagaaag aatcaaacct tttatggctc cggtttacca gagtataaaa 840 gatcaaacac ttaacctgat acccgactta agttgtatag gtaaactatc aactaaagaa 900 gaagcagcag gaaaagtgag agtattcgct atggttgata tatgaacaca gtcaatatta 960 aatcctcttc ataagaagat atttagtatt atccgtgaac ttccaactga tggtacattt 1020 gatcaattga agcctttaga tcgattacat gaactatcta cacaagatag attcagtttc 1080 gatttatctg ctgcaactga tcgattaccc ttgactcttc aaaaagacat tcttacctta 1140 ttagtaagtc catcttttgc agaggcttga ggtacagctc ttgtcggtag accatataaa 1200 ttaaaatttg gtactactga ggacgagctg atgtattcag ttggtcaacc tatgggggca 1260 ttatcctcgt gaggtatgct tgctttaact catcatacga tagttcaagt agcagcctct 1320 cgagcaggat ataaagactt gtttctagat tatgcacttt taggagatga tatttgtata 1380 gctaataaag ctgtagcaga taattatctc ttgattatgc atgatctagg ggttgagatt 1440 aacctatcta aatctttgat ttcatcaact ggtgttgttg aatttgcaaa aagatgaaga 1500 gttggacaaa cagatgtttc tccagcctct ccagctttaa taacaagact tttaagtaat 1560 atgaattact ttccagtctt aatattagat ttagtgaata gaggtgtgaa aaccatccag 1620 aattctgaga aattactttc tcttccggat tcattgcaga agataaagaa aagtataact 1680 ttttctttaa tcccctacta tgatcctgaa tttgcgaaat gtttactacc cttaaaaggg 1740 aaagataaat cgttttcaca agaagaattg tttgctttat atgttcatac agaccgaatt 1800 tttaacaaat taggtctact tgaattccat aaggcaaaag atggtgacca agagaattca 1860 aaactctctc agtcgtattt atataatatc cttgacaata gtgaattacc gttaccggca 1920 atcactagtc aaatagataa tatattaata gcacaaatga aaactattac taacgttcca 1980 attaggaact ggttagataa tagagacatt aatctactaa catttgaatg ttgacattca 2040 tatttaatag atactctttc agagttatct tctatttcta aggttgtacc agattacact 2100 atcattaaag ataatgaaaa accggacaac ttggaaatga gacgaaatct cctcttcatg 2160 caagaactta ttaaagatct taagaagtga aatccgggta tatttgaaat tataccagaa 2220 tccatcctga aagaggagga agtttaatat gtagctacta ttagacttac agtattcaca 2280 tactgtgcat taactttgtt tattttcctt taaaagctgc ataagcaaca ga 2332 //