ID AY616760; SV 1; linear; genomic RNA; STD; VRL; 3683 BP. XX AC AY616760; AY263376; XX DT 30-MAR-2005 (Rel. 83, Created) DT 09-MAY-2006 (Rel. 87, Last updated, Version 3) XX DE Olive mild mosaic virus, complete genome. XX KW . XX OS Olive mild mosaic virus OC Viruses; Riboviria; Tombusviridae; Procedovirinae; Alphanecrovirus. XX RN [1] RP 1-3683 RX DOI; 10.1007/s00705-003-0258-7. RX PUBMED; 15168200. RA Cardoso J.M., Felix M.R., Oliveira S., Clara M.I.; RT "A Tobacco necrosis virus D isolate from Olea europaea L.: viral RT characterization and coat protein sequence analysis"; RL Arch. Virol. 149(6):1129-1138(2004). XX RN [2] RP 1-3683 RX DOI; 10.1007/s00705-004-0453-1. RX PUBMED; 15592885. RA Cardoso J.M., Felix M.R., Clara M.I., Oliveira S.; RT "The complete genome sequence of a new necrovirus isolated from Olea RT europaea L"; RL Arch. Virol. 150(4):815-823(2005). XX RN [3] RP 1-3683 RA Cardoso J.M.S., Felix M.R., Oliveira S., Clara M.I.E.; RT ; RL Submitted (27-MAR-2003) to the INSDC. RL ICAM (Instituto de Ciencias Agrarias Mediterranicas), Universidade de RL Evora, Apartado 94, Evora 7002-554, Portugal XX RN [4] RP 1-3683 RA Cardoso J.M.S., Felix M.R., Clara M.I.E., Oliveira S.; RT ; RL Submitted (04-MAY-2004) to the INSDC. RL ICAM (Instituto de Ciencias Agrarias Mediterranicas), Universidade de RL Evora, Apartado 94, Evora 7002-554, Portugal XX DR MD5; 5a1752b29b099e3286b881d0aa44c0cb. XX CC On May 8, 2006 this sequence version replaced gi:32765794. XX FH Key Location/Qualifiers FH FT source 1..3683 FT /organism="Olive mild mosaic virus" FT /host="Olea europaea L." FT /isolate="GP" FT /mol_type="genomic RNA" FT /country="Portugal" FT /db_xref="taxon:295090" FT CDS 60..2234 FT /codon_start=1 FT /transl_except=(pos:666..668,aa:OTHER) FT /product="RNA-dependent RNA polymerase" FT /note="read-through stop codon" FT /db_xref="GOA:Q58ZJ7" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013707" FT /db_xref="UniProtKB/TrEMBL:Q58ZJ7" FT /protein_id="AAU93817.1" FT /translation="MELTNHHKQTAAEGFVSFLNWLCNPWRRQRTVNAAVKFQQALLSI FT EDTEHFEDINECLEESAGAQSQRTKVVAEGAYSPVKTNRTRRVRKQKKAKFVKYLVNEA FT RAEFGLPKATEANRLMVQHFLLRTCKEWGVVTSQCHNNVALALNLVFIPTEDDLLSRAL FT MNTYATQAAVNGMTNTQGEGWWNNRLGIGSQVGLAFRAKXGCLERRPGFSTSVSRGEHP FT DLVVKPSGHPEKQRQLLRYSGIGGHLLIGIHNNSLSNLRRGLMERVFYVEGPNGLQDAP FT KPDKGAFNSLAKFRDLYTKNSWRHSPVTNEQFLMNYSGRKLTIYKDAVDSLSRQPLSLR FT DARLKTFVKAEKLNLSKKPDPAPRVIQPRSPRYNVCLGRYLRHYEHHAFKTIAKCFGEI FT TVFKGFTLEQQGEIMHSKWKKYVNPVAVGLDASRFDQHVSREALEYEHEFYLRDYPNDK FT QLKWLLKQQLSNVGTAFASDGIIKYKKEGCRMSGDMNTSLGNCILMCAMVFGLKEHLGM FT ELSLANNGDDCVIVCEKADLLKLTSSIEPYFRQFGFKMEVEKPVDIFERIEFCQTQPVF FT DGSQYIMVRKPSVVTSKDVTSLIPCQTQSQYAEWLQAVGECGMSINGGIPVMQNFYTML FT QTGVKRTKFTKTGEFQTNGLGYHSRFMNRVARTPSPETRLSFYLAFGITPDLQEALEVF FT YDTSTLELDDVIPTDTYQVSGEHLINGLPN" FT CDS 60..668 FT /codon_start=1 FT /product="p23" FT /db_xref="GOA:Q58ZJ6" FT /db_xref="InterPro:IPR013707" FT /db_xref="UniProtKB/TrEMBL:Q58ZJ6" FT /protein_id="AAU93815.1" FT /translation="MELTNHHKQTAAEGFVSFLNWLCNPWRRQRTVNAAVKFQQALLSI FT EDTEHFEDINECLEESAGAQSQRTKVVAEGAYSPVKTNRTRRVRKQKKAKFVKYLVNEA FT RAEFGLPKATEANRLMVQHFLLRTCKEWGVVTSQCHNNVALALNLVFIPTEDDLLSRAL FT MNTYATQAAVNGMTNTQGEGWWNNRLGIGSQVGLAFRAK" FT CDS 852..2234 FT /codon_start=1 FT /product="p52" FT /db_xref="GOA:Q58ZJ5" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:Q58ZJ5" FT /protein_id="AAU93816.1" FT /translation="MERVFYVEGPNGLQDAPKPDKGAFNSLAKFRDLYTKNSWRHSPVT FT NEQFLMNYSGRKLTIYKDAVDSLSRQPLSLRDARLKTFVKAEKLNLSKKPDPAPRVIQP FT RSPRYNVCLGRYLRHYEHHAFKTIAKCFGEITVFKGFTLEQQGEIMHSKWKKYVNPVAV FT GLDASRFDQHVSREALEYEHEFYLRDYPNDKQLKWLLKQQLSNVGTAFASDGIIKYKKE FT GCRMSGDMNTSLGNCILMCAMVFGLKEHLGMELSLANNGDDCVIVCEKADLLKLTSSIE FT PYFRQFGFKMEVEKPVDIFERIEFCQTQPVFDGSQYIMVRKPSVVTSKDVTSLIPCQTQ FT SQYAEWLQAVGECGMSINGGIPVMQNFYTMLQTGVKRTKFTKTGEFQTNGLGYHSRFMN FT RVARTPSPETRLSFYLAFGITPDLQEALEVFYDTSTLELDDVIPTDTYQVSGEHLINGL FT PN" FT CDS 2218..2439 FT /codon_start=1 FT /product="p8" FT /db_xref="GOA:Q58ZJ4" FT /db_xref="InterPro:IPR007982" FT /db_xref="UniProtKB/TrEMBL:Q58ZJ4" FT /protein_id="AAU93818.1" FT /translation="MDYQTDINEDNVSISGRARRGTGDKKHNGSGMSGVKRHAVSETAQ FT KSQQGTGNGTMTNIAEEQTITVTYNFNF" FT CDS 2443..2613 FT /codon_start=1 FT /product="p6" FT /db_xref="GOA:Q58ZJ3" FT /db_xref="UniProtKB/TrEMBL:Q58ZJ3" FT /protein_id="AAU93819.1" FT /translation="MAVCRCCDTSPGITLFPYFAILILILAILVVGTPNQQYHHSPSTY FT EYKTQHISIAK" FT CDS 2636..3445 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:Q58ZJ2" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q58ZJ2" FT /protein_id="AAU93820.1" FT /translation="MPKRGRVGLAESFQGKTKQQKRAEYEAVKREQLERAFANNSKVAN FT PRSSGLSFRPLVAPIAGSVVYSRPRVPQIRTNQMSTIVVNTELVANITLAAAGAFSFTA FT QPLIPSFGSWLANIADLYSKWRWIRCSVIYIPKCPTTTQGSVVMAIVYDAQDTVPTTRT FT QVSQCYQSITFPPYAGYGGASALNSNSSGGESLVSTLDTNRVDKKWYSTIGNAAFTALT FT SIDKNQFCPATALIAGDGGPVAATAVGDVFMRYEIEFIEPINPTINV" XX SQ Sequence 3683 BP; 1041 A; 874 C; 900 G; 868 T; 0 other; agtatacata ccaagtatac ggaataggtg tgaacccttg ctcagctaaa gaggataaaa 60 tggagctcac taaccaccac aagcaaactg ctgctgaagg atttgtaagc tttctgaact 120 ggctttgtaa cccatggaga cgacaacgaa cagtcaacgc tgctgttaag ttccaacagg 180 ctctcctctc aatagaggat actgaacact tcgaggacat caacgaatgc ctcgaggagt 240 ctgctggagc ccaatcacag cgaactaagg ttgtcgccga aggggcatat tctcccgtca 300 aaaccaatcg tacccgccga gtccgcaagc agaagaaggc caagtttgtc aagtacttgg 360 tcaatgaggc tcgtgccgag tttggtctac ccaaagccac tgaggccaat cgacttatgg 420 tacaacactt cttgctcaga acgtgtaagg aatggggtgt ggtcacctcc caatgtcaca 480 acaacgttgc acttgcgtta aacctagtgt tcatcccaac tgaagatgac ctgctgtccc 540 gagcactgat gaacacttac gccacgcaag ctgctgtgaa tggaatgacc aacacccaag 600 gggaggggtg gtggaacaac cgacttggga ttggatccca ggttggactg gccttccggg 660 ccaaataggg gtgcctagag aggaggccag ggttctccac gtccgtttcg cgtggagagc 720 accctgatct ggtggtcaaa ccatcaggac accccgagaa acagcgccag ttgctgcgct 780 atagtggaat tggcggccat ttactaattg gcatccacaa caactctctc tccaatttgc 840 gccggggctt aatggaaaga gtattctacg tcgagggacc caatgggctc caagacgccc 900 cgaaacccga caagggagcc ttcaactccc ttgctaagtt cagagatctc tatacaaaga 960 atagctggcg tcattcccct gtaaccaatg agcaattttt gatgaattac tcgggcagga 1020 agctaactat ttacaaggat gcggtcgaca gtttgtcgcg tcaaccgctt agcctaagag 1080 atgctcggct gaagacattc gttaaggcgg aaaaattgaa tctgagtaag aaaccagatc 1140 cagcaccgag ggtcattcag cctcggtcgc cccgctataa cgtatgtttg ggtcgttatc 1200 ttcgtcacta tgaacatcac gcgtttaaaa ccattgctaa atgctttggg gaaatcacgg 1260 tcttcaaagg attcactctc gagcaacaag gtgaaatcat gcactccaag tggaagaaat 1320 atgttaatcc cgttgcggtc ggtctcgatg ccagtcgatt cgatcaacac gtgtctaggg 1380 aagcacttga gtacgagcat gaattttatt tgagagatta tcctaatgat aaacagctaa 1440 aatggttgct taagcaacaa ttgagtaatg taggcacagc attcgctagc gacggaatca 1500 taaagtacaa gaaagaggga tgtagaatga gtggggacat gaacacaagt ttgggaaact 1560 gcatattgat gtgcgccatg gtctttgggc taaaagaaca cttaggaatg gaattgtcat 1620 tggctaacaa tggggatgac tgcgtcattg tctgtgagaa agcggattta ttgaaattga 1680 cgagcagcat cgaaccatat ttcagacagt tcggattcaa aatggaagtg gaaaagcctg 1740 tagacatctt tgagcgcatt gaattttgcc aaacccaacc tgtgttcgat ggctcccaat 1800 acattatggt taggaaaccc tccgttgtaa cttccaaaga tgtcactagc ttaataccgt 1860 gccaaacaca atctcaatac gcagaatggc tgcaagctgt tggtgagtgc ggtatgagca 1920 taaatggtgg aatacctgtc atgcagaatt tctacaccat gttgcaaact ggcgtaaagc 1980 gcacaaaatt caccaagacc ggcgagttcc agacgaatgg gctggggtat cactctcgat 2040 ttatgaacag ggtggcccga actccttcgc ctgagacccg tttatccttt tacttagcgt 2100 ttggtatcac accagacctc caggaagcat tggaggtctt ctatgatacc agtacgcttg 2160 aattggatga tgtgatccca actgatacct accaagtgtc aggagagcat ttaatcaatg 2220 gattaccaaa ctgatatcaa cgaagataac gtgagcataa gcggtcgggc caggaggggc 2280 actggggaca agaaacacaa tggttcggga atgtctggcg taaagcgtca tgcggtgagt 2340 gaaacagctc agaaatcgca gcaaggtact ggcaatggca caatgaccaa catagctgaa 2400 gaacagacca ttaccgtgac atacaacttt aacttttgag ttatggctgt gtgtcgctgc 2460 tgtgatactt caccaggtat tacattattc ccttactttg caattctcat cctcatcctt 2520 gcaatactag ttgttggaac tccaaaccag caatatcatc attctcctag cacttacgag 2580 tacaagactc aacacatttc gatcgcaaaa tagacattta ctataacacc aaaacatgcc 2640 taagagagga cgagttggac tcgctgaatc ttttcaagga aagacgaagc aacagaaacg 2700 ggcagagtac gaagctgtaa aacgtgagca gctcgaacgt gcattcgcaa acaattccaa 2760 ggtagccaat cctagatctt ctgggctaag cttccgaccg ttggtggcac caatcgccgg 2820 gtccgttgtt tacagcagac ctcgcgtgcc acagatccgc acgaaccaaa tgtcaactat 2880 tgtggtaaac actgaattgg tagccaacat cactttggct gctgctggag cattcagttt 2940 caccgcccag ccattgatac catcatttgg atcttggttg gccaacatag ctgacttgta 3000 ctcaaaatgg agatggatta ggtgttcagt catatacata cctaaatgtc ccaccaccac 3060 tcaaggtagt gtggttatgg cgattgtgta tgatgcgcag gacaccgtac ctacgacacg 3120 aacgcaggta tcacagtgtt atcaatccat cacatttcca ccgtacgccg ggtacggtgg 3180 cgcctctgcg ctaaatagca acagctctgg aggggaatcg ctagtgtcta cacttgacac 3240 caatcgcgtt gataagaagt ggtacagcac aataggcaac gctgccttca ctgctctcac 3300 atctatcgac aagaaccagt tctgtccagc cacagctctc attgctgggg acggcggacc 3360 tgtggctgcc acagctgtgg gcgatgtatt tatgcgatat gagattgagt tcatcgaacc 3420 aatcaaccct accattaacg tttgagtgtt agttaactgg cttaaaccct aagggtagat 3480 atgtgggcgg taagcaagag ggatcctggg aaacaggctt cgacgggttg ggggtggtgc 3540 cccggccgac gcatcacttg ctgatacaac cattagacac ctaagggcgg gtctagccag 3600 gtctccacgc catgatcaat tggaaacgat tgtgaggggg gtagtggaac ccataccaga 3660 ttgaggggcc tttgccccac ccc 3683 //