ID AY744482; SV 1; linear; genomic RNA; STD; VRL; 4767 BP. XX AC AY744482; XX DT 13-OCT-2004 (Rel. 81, Created) DT 05-AUG-2023 (Rel. 144, Last updated, Version 3) XX DE Tomato spotted wilt virus isolate CA-4 segment M, complete sequence. XX KW . XX OS Orthotospovirus tomatomaculae OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Tospoviridae; Orthotospovirus. XX RN [1] RP 1-4767 RX DOI; 10.1111/j.1365-294X.2004.02392.x. RX PUBMED; 15643950. RA Tsompana M., Abad J., Purugganan M., Moyer J.W.; RT "The molecular population genetics of the Tomato spotted wilt virus (TSWV) RT genome"; RL Mol. Ecol. 14(1):53-66(2005). XX RN [2] RP 1-4767 RA Tsompana M., Abad J., Purugganan M., Moyer J.W.; RT ; RL Submitted (08-SEP-2004) to the INSDC. RL Plant Pathology, North Carolina State University, 2518 Gardner Hall, RL Raleigh, NC 27695-7616, USA XX DR MD5; 2a150f4219b6f861add87b413130be58. XX FH Key Location/Qualifiers FH FT source 1..4767 FT /organism="Orthotospovirus tomatomaculae" FT /segment="M" FT /host="chrysanthemum" FT /isolate="CA-4" FT /mol_type="genomic RNA" FT /country="USA: California" FT /db_xref="taxon:3052585" FT gene 101..1009 FT /gene="NSm" FT CDS 101..1009 FT /codon_start=1 FT /gene="NSm" FT /product="non-structural protein" FT /db_xref="InterPro:IPR000603" FT /db_xref="InterPro:IPR006889" FT /db_xref="UniProtKB/TrEMBL:Q5XP39" FT /protein_id="AAV28047.1" FT /translation="MLTLFGNKGSSKSARRDEGPLVSLAKHNGNVEVSKPWSSSDEKLA FT LTKAMDTSKGKILLNTEGTSSFGTYESDSITESEGYDLSARMIVDTNHHISNWKNDLFV FT GNGKQNANKVIKICPTWDSRKQYMMISRIVIWVCPTIPNPTGKLVVALVDPNMPSEKQV FT ILKGQGTITDPICFVFYLNWSIPKMNNTPENCCQLHLMCSQEYKKGVSFGSVMYSWTKE FT FCDSPRADKDKSCMVIPLNRAIRARSQAFIEACKLIIPKGNSEKQIKKQLKELSSNLER FT SVEEEEEGISDSVAQLSFDEI" FT CDS complement(1276..4683) FT /codon_start=1 FT /product="glycoprotein precursor" FT /note="G1, G2" FT /db_xref="GOA:Q5XP38" FT /db_xref="InterPro:IPR005167" FT /db_xref="InterPro:IPR014414" FT /db_xref="UniProtKB/TrEMBL:Q5XP38" FT /protein_id="AAV28048.1" FT /translation="MRILKLLELVVKVSLFTIALSSVLLAFLIFRATDAKVEIIRGDHP FT EVYDDSAENEVPTAASIQRKAILETLTDLMLESQTPRTRQIREEESTIPIFAESTTQKT FT ISVSDLPNNCLNASSLKCEIKGISTYNVYYQVENNGVIYSCVSDSAEGLEKCDNSLNLP FT KRFSKVPVIPITKLDNKRHFSVGTKFFISESLTQDNYPITYNSYPTNGTVSLQTVKLSG FT DCKITKSNFANPYTVSITSPEKIMGYLIKKPGENVEHKVISFSGSASITFTEEMLDGEH FT NLLCGDKSAKIPKTNKRVRDCIIKYSKSIYKQTACINFSWIRLILIALLIYFPIRWLVN FT KTTKPLFLWYDLIGLITYPILLLINCLWKYFPFKCSNCGNLCIITHECTKICICNKSKA FT SKEHSSECPILSKETDHGYDKHKWTSMEWFHLIVNTKLSFSLLKFVTEILIGLIILSQM FT PMSMAQTTQCLSGCFYVPGCPFLVTSKFEKCPEKDQCYCNVKEDKIIESIFGTNIVIEG FT PNDCIENQNCAANPSIDNLIKCRLGCEYLDLFRNKPLYNGFSDYTGSSLGLTSVGLYEA FT KRLRNGIIDSYNRTDKISGMIAGDSLNKNETSIPENILPRQSLIFDSVVDGKYRYMIEQ FT SLLGGGGTIFMLNDKTSETAKKFVIYIKSVGIHYGVSEKYTTAPIQSTHTDFYSTCTGN FT CDTCRKNQALTGFQDFCITPTSYWGCEEAWCFAINEGATCGFCRNIYDMDKSYRIYSVL FT KSTIVADVCISGILGGQCSRITEEVPYENALFQADIQADLHNDGITIGELIAHGPDSHI FT YSGNIANLNDPVKMFGHPQLTHDGVPIFTKKTLEGDDMSWDCAAIGKKSITIKTCGYDT FT YRFRSGLEQISDIPVSFKDFSSFFLEKAFSLGKLKIVIDLPSDLFKVAPKRPSITSTSL FT NCKGCLVCGQGLSCILEFFSDLTFSTAISIDACSLSTYQLAVKKGSNKYNITMFCSANP FT DKKKMTLYPEGNPDISVEVLVNNVIVEEPENIIDQNDEYAHEEQQYNSDSSAWGFWDYI FT KSPFNFIASYFGSFFDTIRVVLLIAFIFLVIYFCSILTTICKGYVKNESYKSRSKIEDD FT DDSEIKAPMLMKDTMTRRRPPMDFSHLV" XX SQ Sequence 4767 BP; 1519 A; 853 C; 852 G; 1543 T; 0 other; agagcaatca gtgcgtcaga aatataccta ttatacactt tgctaagaat caatcaatta 60 cattacacaa gctcctctac cttaggctgt tgaactcaaa atgttgactc ttttcggtaa 120 taaggggtct tctaagtctg ccagaaggga tgaaggtcct ttagtttcac ttgctaaaca 180 taatggcaat gttgaagtct ctaagccatg gtcttcttct gatgaaaagc ttgctttgac 240 taaagctatg gatacatcca aaggaaagat actgttgaac acagagggaa catcttcctt 300 tggaacctat gaatctgatt ctatcacaga atcagagggt tatgatcttt ctgcaagaat 360 gatagtagat acaaaccatc atatctcaaa ctggaaaaat gatctttttg ttggcaacgg 420 gaagcaaaac gcaaataagg tcatcaagat ctgtccaact tgggacagca ggaaacaata 480 catgatgatt tccaggattg tgatatgggt ctgccccact ataccaaacc ctacagggaa 540 acttgtggtt gccctggtcg atcccaacat gccatctgaa aagcaagtca ttctgaaggg 600 tcaggggaca ataactgatc ctatatgttt tgttttttat ctgaactggt ctattccaaa 660 aatgaataac actccagaaa actgctgtca gctgcatttg atgtgcagcc aagaatacaa 720 gaagggggtt tcttttggta gtgtcatgta ttcttggaca aaggagtttt gtgattcacc 780 cagagctgat aaagataaaa gttgcatggt catacctcta aacagagcca ttagagctag 840 atctcaagca ttcattgagg cttgcaagct gataattcct aaaggaaaca gtgagaagca 900 gattaaaaaa cagcttaaag aattaagctc aaatcttgag agatcagttg aagaagaaga 960 ggaagggatt tctgatagtg ttgctcagtt atcttttgat gaaatatagt attttactgt 1020 cacttattta agcttaaatt tctgttaatt ttgcatttta aatcaaaaac caaaacaaaa 1080 aacaaaaaaa gaaaaacaaa aaatcaaaaa caaaaaacaa aaacaaaata aggctgaaaa 1140 gccaaactat ggtccgaaga ctctttttgt tgttttttgt ttatttgtat tttttgttgt 1200 ttttttgttt atttatatat acataatctg actaatgtag aagattgaat caaatttagc 1260 ctgtgacaag cagactcaga caaggtgaga gaaatccata ggtggccttc gtcttgtcat 1320 tgtatctttc attaacatag gggctttgat ctcagaatca tcatcatcct ctatcttgga 1380 tctagattta taagattcat tcttgacata tcctttacaa atggttgtta gaatagaaca 1440 gaaataaatc acaaggaaaa tgaatgcaat aagcaatacc actctgatag tatcaaaaaa 1500 tgagccaaaa taacttgcaa tgaaattgaa tgggcttttg atataatccc agaagcccca 1560 tgctgaagaa tcagaattat attgttgttc ttcatgagca tactcatcat tttgatctat 1620 tatgttctct ggttcttcta caataacatt attgaccaga acttctacag aaatatccgg 1680 attgccttct ggatacaacg tcattttctt cttgtccgga ttagcagaac aaaacattgt 1740 tatgttgtat ttattagatc cttttttaac agccagctga taagtagata gagagcaagc 1800 atctatagaa attgcagtag aaaatgtcag atctgagaaa aattctaaaa tgcaagataa 1860 accttgaccg catacaagac agcctttgca atttaagctt gttgaggtta tggaaggtct 1920 cttaggagca actttaaaaa gatcagatgg aagatcgatg acaatcttga gtttccctaa 1980 actgaaagct ttttccaaga aaaaactaga gaaatctttg aaactaacag gaatatctga 2040 tatttgttct aaaccagatc taaatctgta tgtatcatat ccacatgttt taatagtgat 2100 tgattttttc cctattgctg cacaatccca agacatatcg tctccttcta gagttttttt 2160 agtaaaaata ggcactccat catgagtcaa ttgtgggtga ccaaacattt tcacaggatc 2220 attcaagttt gcaatatttc cagaataaat atggctgtca ggtccatgag ctatcagttc 2280 acctatagtg ataccgtcat tgtgcaaatc tgcttgtata tcagcttgaa acaaggcatt 2340 ttcataagga acctcttctg taatccttga gcactgacct cccaaaatac cagaaataca 2400 gacatctgcc actatagttg attttagcac tgaataaatt ctgtatgatt tatccatgtc 2460 atagatattc cgacagaatc cgcatgtagc accttcatta attgcaaaac accaagcttc 2520 ttcacatccc caataagaag ttggtgttat acaaaaatcc tggaaaccag ttaaagcttg 2580 attttttctg caagtgtcac agtttcctgt gcaagtggaa taaaaatctg tgtgggtgct 2640 ttggatagga gctgttgtgt atttttctga cactccataa tgaattccca cacttttgat 2700 ataaatcaca aatttttttg ctgtttctga ggtcttatca tttaacatga atatagtccc 2760 tcctcctcct aaaagagatt gttctatcat gtatctatat ttcccgtcta caacagaatc 2820 aaagatcaat gattgtctag gcagaatgtt ctctggtatg cttgtttcgt ttttgtttag 2880 agaatctcct gcaatcattc cagaaatttt gtctgtacga ttataagaat ctattatacc 2940 attcctcaat ctcttagcct catacagacc aaccgatgtt aaccctaaag agcttcctgt 3000 ataatctgaa aacccattat acaaaggttt gttccgaaat aaatctaggt actcgcaacc 3060 cagtctgcat tttataagat tatcaataga tgggtttgca gcacaattct ggttctctat 3120 gcaatcatta ggtccttcta taacaatgtt agtgccaaag atactttcta taatcttatc 3180 ttctttcaca ttacagtaac attgatcttt ttctgggcat ttttcaaatt tgcttgtaac 3240 caaaaacgga cagcctggga cataaaaaca tccactcaaa cattgggtag tttgagccat 3300 agacatgggc atttgagaca aaatgatcaa acctattaag atttcagtca caaatttcag 3360 caaactaaag ctcagcttag tgttcactat tagatggaac cattccatgc tagtccactt 3420 gtgtttgtcg tagccgtgat ctgtttcttt ggacaatatg ggacactctg aagaatgttc 3480 ttttgaagct ttgcttttgt tgcagatgca aattttagta cattcatgtg tgattatgca 3540 caaattgcca cagttagaac atttaaatgg aaaatatttc cataagcaat ttatgagcag 3600 caaaataggg tatgtgatca agcctataag atcataccag agaaagaggg gtttggttgt 3660 cttgtttact aaccaccgga tagggaaata gatcaacaaa gctatcaata ttaatcttat 3720 ccaagaaaaa ttgatgcagg ctgtttgttt ataaatgctt tttgaatatt tgattatgca 3780 atctctaact cttttgtttg tttttggtat tttagctgat ttgtcaccgc acaagagatt 3840 gtgctcacca tccaacattt cttcagtaaa agtgatgctt gctgatccag aaaaggatat 3900 gaccttgtgt tccacatttt caccaggctt ttttatcaaa taacccatga tcttctcggg 3960 gctagtgatg ctaacagtat agggattggc aaagtttgat ttagttattt tgcagtcacc 4020 agataacttt acagtttgca atgatactgt tccattagta gggtacgagt tataagttat 4080 aggataatta tcttgtgtca ggctttctga aatgaagaat tttgttccaa ctgaaaaatg 4140 ccttttgttg tcaagtttgg taatgggaat aaccgggact ttggagaatc tctttggcag 4200 atttaaagaa ttgtcacatt tttctaaacc ttccgctgaa tcagaaacac aggaatatat 4260 gacaccatta ttttccactt gataataaac attataagtg gatatccctt ttatctcaca 4320 ttttaatgaa gaagcattca agcagttgtt aggaagatcc gagacagaga ttgttttttg 4380 tgtagttgac tcagcaaaaa tagggatagt tgattcttct tctcgtatct gacgggttct 4440 gggagtctga gattctagca tcagatcagt caaagtctct aagatagcct tgcgttgaat 4500 cgatgcagca gttggtactt cattctcagc agaatcatcg taaacctcag gatggtctcc 4560 acgaattatt tctactttag catctgtggc tctgaagatc aagaatgcca gcaagacaga 4620 actcagggca attgtgaaaa gactcacttt taccactagt tctagtagtt ttaaaattct 4680 catcttagac gtctgctcag attataatgg ttatatgatt aatttcaaga tgtctggatt 4740 aaggtttttg tttgcactga ttgctct 4767 //