ID AY744932; SV 1; linear; genomic RNA; STD; VRL; 6000 BP. XX AC AY744932; XX DT 01-OCT-2005 (Rel. 85, Created) DT 16-SEP-2010 (Rel. 106, Last updated, Version 3) XX DE Bean pod mottle virus subgroup II segment RNA1, complete sequence. XX KW . XX OS Bean pod mottle virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Comovirinae; Comovirus. XX RN [1] RP 1-6000 RX DOI; 10.1094/PHYTO-97-0079. RX PUBMED; 18942940. RA Gu H., Zhang C., Ghabrial S.A.; RT "Novel Naturally Occurring Bean pod mottle virus Reassortants with Mixed RT Heterologous RNA1 Genomes"; RL Phytopathology 97(1):79-86(2007). XX RN [2] RP 1-6000 RX DOI; 10.1094/PHYTO-97-10-1255. RX PUBMED; 18943683. RA Zhang C., Gu H., Ghabrial S.A.; RT "Molecular Characterization of Naturally Occurring RNA1 Recombinants of the RT Comovirus Bean pod mottle virus"; RL Phytopathology 97(10):1255-1262(2007). XX RN [3] RP 1-6000 RA Zhang C., Ghabrial S.A.; RT ; RL Submitted (08-SEP-2004) to the INSDC. RL Plant Pathology, University of Kentucky, 1405 Veterans Drive, Lexington, KY RL 40546, USA XX DR MD5; 9de97ccae88524c7d294eaa3fcf0f6dd. XX FH Key Location/Qualifiers FH FT source 1..6000 FT /organism="Bean pod mottle virus" FT /segment="RNA1" FT /strain="IL-Carbondale 1 (IL-Cb1)" FT /mol_type="genomic RNA" FT /country="USA" FT /note="subgroup: II" FT /db_xref="taxon:12260" FT CDS 370..5925 FT /codon_start=1 FT /product="polyprotein 1" FT /note="proteolytically processed by a virus-encoded FT protease to generate five mature proteins required for FT viral RNA replication" FT /db_xref="GOA:Q3L2Z1" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR004004" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR014759" FT /db_xref="UniProtKB/TrEMBL:Q3L2Z1" FT /protein_id="AAW69769.1" FT /translation="MKFYPGQNVSEIVYHFQSNETANRLDAYFACGCEEDTEVLARLKQ FT CNPRLLHLSYAAFCLEMGSHSVEEIEYDDGELVFLYFQNFLLSIVSNSSKTANLRAYIR FT SAFAYHFQHFVEFDQYTNDSLNVMDTSVSAQGIADLALSMVRWIPTQIKKVVNFGVGSV FT IESFSEHFNKLIMQYCPIVFQAFSWVNNIWTMVKEWIEEAAKEISWFLQGCKELLAWGM FT CILASSCALGLVEKCLISLGMISESFDLVGLFVRSAIVGAFCVSIKTGKFVSNSELITC FT ATIAVSTIATVMSQAFKPSEEIKGQFQALSVLEGLATQLTSFCDTSLIAMGKTCTAFNQ FT ICTAGKNVKVIAGRLLDVVSNFVRKLLGLDSAFLRDAALIFSQDVDGWLRNISWCQEQF FT LLKAYMSQDDLIVLRSLVVKGERMREQMLEGEVKVSPSVCNLIVKGCEEASKLMRESVL FT HCSKTVRKIPFVIFAHGDSRVGKSLLVDRLITDFCDHLEIGEDAVYSRNPSDPFWSGYR FT RQPIVTIDDFAAVASEPSAEAQLIPLISSAPYPLNMASLEEKGMHFDSQIMMCSSNFLE FT PSPEAKIRDDMAFRNRRHVLITVELKPGVEYDESDFTKNQRYLLKTWFHDHYVVDQTFE FT SYADLLAYCFTKWERHVKEQESNLSQIKGKKSESGHFNNFQQLMDLAVSWNLSANIMKE FT RIKADKSDMVYVFSAGRKDKIVHCFLNKEGECSIRPDSIEDPEAQLLLKASETMLMKAY FT AFLKYNNATNLIVRTHLAELVNEDFYDEKFNFIGTIGTPAFHRQIAAHLEKMPLWQKAI FT LCGMGHCLSRKSKETWYSGMKEKFVQMMKSIYETEVTDWPVPLKIISGTILATILGTTF FT WKLFSFLRDAGNGGVFVGNVASAFTTSSVLEAQSRKPNRYEVSQYRYRNVPIKRRAWVE FT GQMSFDQSVVAIMSKCKASMRMGNTDAQILMVPGRRFIAHGHFFKNLTQKVRVQIVTSE FT KSYWHVYDPDKFQMFDNSEIGLYYNPTLEDIPHSAWDLFCWDSEKTLPNNFSAELLSCK FT LDTVTGQYYPEWAPINCRVHRQPIHITEGNYVRKQDVSIEYDACTIPNDCGSLVVAKVG FT NHKQIVGFHVAGSKGRLGYASLIPYVEPVVQAQSAEVYFDFFPVEVDSQEGVAHIGELK FT SGVYVPLPTKTNLVETPKEWQLDLPCDKIPSVLTTTDERLVGTEHEGYDPFLGGIQKYA FT TPMMPLDEEILSKVAQDMVEEWFDCVDEEDSFEEVSLSAALNGVEGLDYMERIPLATSE FT GFPHVLSRKNGEKGKRRFVSGDGEEMTLIPGTSVEEAYNKLIVELEKSVPTLVGIECPK FT DEKLPRRKIFDKPKTRCFTILPMEFNLVVRQKFLNFVRFIMKKRDKLSCQVGINPYSME FT WTGLANRLLSKGNDILCCDYASFDGLITKQVMSKMAEMINSLCGGDEKLMRERTHLLLA FT CCSRMAICKKDVWRVECGIPSGFPLTVICNSIFNEMLIRYSYEKLLRQAKAPSMFLQSF FT KNFVSLCVYGDDNFISVHEYVKPYFSGSKLKSFLAGHNITITDGIDKTSATLQFRKLAD FT CDFLKRNFKQMSNVLWVAPEDKASLWSQLHYVSCNNLEMQEAYLVNLVNVLRELYLHSP FT EEARQLRRKALSRIEWLQKADVPTIAQIEEFHSMQRMMNAPDSNDNIDLLLSIDLLGLQ FT GAGKAFPNKIVFDDKLVLANTQEFFDGNFPVDSWLPIFVNCLYPVSQLPPEAVVVNVTC FT GSGRGGLPTTAWISSAVNNRSSDINKKIRTALGKGKKIVFLTRVDPFPVALLAVLFGVK FT NEILSSNATNPMLTRLLENCKSLKYLVDECPFAFVN" XX SQ Sequence 6000 BP; 1746 A; 995 C; 1296 G; 1963 T; 0 other; tattaaaatt ttcataagat ttgaaatttt gataaaccgc gatcacaggt tgccgcacct 60 taaaaccgga aacaaaagca atcgttactt gttctcaaga atcttcaaac tttcttctgt 120 tttctctgca ctcggttctt caggacaaga aaatcactct ctgtattgat tacagacttc 180 gtgaatcatt ttcttttcaa ctttcagttc acttgctgaa cactctccta taaatatata 240 ggacttcgtg tcagatttga acttttcctg tttctttctc ggttttcttt cttattctca 300 tcttctttaa attttaaggc tcgcattttg tttctttaaa ctttctgttg tactcatttg 360 aaatacaaca tgaagtttta tccaggacaa aatgtctctg aaattgttta ccattttcag 420 agtaatgaga cagctaatag gcttgatgct tattttgcct gtggctgtga agaggatact 480 gaagtcctcg ctcgcttgaa gcaatgtaac cctcggctac tgcatttatc ttatgctgct 540 ttctgtttgg aaatgggcag tcattctgtt gaagaaatag aatatgatga cggagagttg 600 gttttcttgt atttccaaaa ttttctactc tccatagtgt ccaattcttc caagacagca 660 aatctgagag catacatacg ttcagctttt gcatatcatt ttcagcactt tgttgaattt 720 gatcaatata caaatgactc tctcaatgtg atggatacaa gcgtatctgc tcaaggaatt 780 gcagatttgg ctctgtccat ggtcagatgg attcctactc aaattaaaaa agttgtgaat 840 tttggggtag gatcggtcat agaatccttt tcagagcatt tcaataagct cataatgcaa 900 tattgtccaa tagtgttcca agcttttagc tgggttaaca atatttggac catggttaaa 960 gaatggattg aagaggctgc gaaggaaatt tcttggttcc tgcaaggttg taaggaattg 1020 ttagcttggg gaatgtgtat tctagctagt tcctgtgctt tgggattggt tgaaaaatgt 1080 ctcatttctc taggcatgat ttctgaatct tttgatttgg ttggtttgtt tgttcgatca 1140 gccattgttg gagccttctg tgtttctatc aagacgggca agtttgtttc aaatagtgag 1200 ttgatcacat gtgctaccat tgcagtttct acaattgcaa ctgttatgtc tcaagctttc 1260 aaaccttctg aagaaattaa agggcaattc caggctcttt ctgttttaga gggattggca 1320 acacaactca cttcattttg tgacacatct ttgattgcca tgggaaaaac ttgcacagca 1380 tttaatcaaa tttgtactgc tggaaaaaat gttaaggtga ttgctggcag attgttggat 1440 gtagtttcca attttgtaag gaaacttttg ggattggata gtgcttttct tagagatgca 1500 gcgctcatct tctctcaaga tgttgatggt tggctgcgca atatcagctg gtgtcaggaa 1560 caattcctac tgaaagcata catgtctcaa gatgatctta ttgtcttgcg ttccttagtt 1620 gtcaaaggtg aaagaatgag agagcaaatg ttggaaggag aggttaaagt gtctcccagt 1680 gtttgtaatc ttattgtaaa aggttgtgaa gaagcaagta agttgatgag agaaagtgtg 1740 ctacattgtt caaagactgt acggaaaatt ccatttgtca tttttgcaca cggtgattct 1800 cgtgttggaa aatctttgct agttgataga cttatcacag atttttgtga tcatctggaa 1860 attggggagg atgctgttta ttcaaggaat ccttcggatc ctttctggag tgggtatagg 1920 agacaaccaa tcgtcactat tgatgatttt gctgctgttg catcagagcc atctgctgag 1980 gctcaattga ttccattaat ttcaagtgct ccgtacccat tgaacatggc aagtttagag 2040 gaaaagggaa tgcactttga ttcccagatc atgatgtgct cttcaaattt tttggaacct 2100 tctcctgaag ccaaaattag agatgacatg gcttttagaa atagaagaca tgttttgata 2160 acagttgaac ttaaacctgg agtggagtat gatgagagcg attttaccaa aaatcagcga 2220 tatttactca aaacttggtt tcatgatcat tatgttgtag accaaacttt tgaatcttat 2280 gctgatcttt tggcatattg cttcactaaa tgggagagac atgtgaagga acaagagtct 2340 aatttgtctc aaattaaagg taagaaaagt gagagtggcc atttcaataa ttttcaacaa 2400 cttatggatt tggcagtttc atggaatctc agtgcgaata tcatgaagga acgaatcaaa 2460 gctgataaaa gtgatatggt ttatgtcttc tctgctggaa ggaaggacaa aattgtacat 2520 tgcttcttga ataaagaagg tgaatgtagt atacgtcctg attcaataga agatccagaa 2580 gcacaacttt tgctcaaagc ttcagaaact atgctcatga aagcttatgc ttttttgaag 2640 tacaacaatg cgaccaattt gattgtcagg acccatttgg cagaattggt caatgaggac 2700 ttttatgatg aaaagtttaa tttcattggc acaattggga ctccagcttt tcatcggcaa 2760 attgctgcac acttggagaa aatgccatta tggcaaaaag caattttgtg tggaatggga 2820 cattgtttgt ctcggaaaag caaagaaaca tggtattctg ggatgaagga aaaatttgta 2880 caaatgatga agagcatcta tgaaacagaa gttacagatt ggccagtacc actgaaaatt 2940 atttctggaa ccattcttgc aacaattttg ggaacaacct tctggaaact cttttccttt 3000 cttagagatg ctggtaatgg gggagttttt gttggtaatg ttgcttcagc attcacaacc 3060 tcaagtgtgc tcgaggccca aagtagaaaa cccaacagat atgaagtttc ccaatacaga 3120 tatcgcaatg tgccaataaa gcgcagagca tgggttgaag gccagatgtc tttcgatcag 3180 tctgtagtag caattatgtc taaatgcaaa gccagcatga gaatgggaaa cactgatgct 3240 caaattttga tggttccagg gcgcagattc atagctcatg gacatttctt caaaaatctg 3300 actcagaaag tgcgagtcca aattgttaca tctgaaaaga gttactggca tgtttatgat 3360 cctgacaagt ttcagatgtt tgacaacagt gaaataggcc tttattataa tcccactttg 3420 gaagatatcc cacattcagc ttgggacctt ttttgctggg acagtgaaaa aaccttgcca 3480 aataattttt ctgcagaatt gctctcttgc aaattggata ctgttactgg ccaatattat 3540 cctgagtggg ctccaatcaa ttgtcgagtt catcgacaac caattcacat cactgaagga 3600 aattatgtca gaaagcaaga tgtcagcatt gaatatgatg catgtacaat tccaaatgat 3660 tgtggttcat tggttgttgc caaggttgga aatcacaaac aaattgttgg tttccatgtt 3720 gctggaagta aaggaagact gggatatgct tcattgatac catatgttga gccagttgtg 3780 caagctcaaa gtgctgaagt ttactttgac ttcttccctg tggaggttga tagtcaagaa 3840 ggagttgctc acattggtga attgaaatct ggtgtctatg ttccactgcc tacaaaaacc 3900 aatttagtgg aaactcccaa ggaatggcaa ctggatctac cttgtgacaa aattcctagt 3960 gtcttgacta caactgatga gagattggta ggcacagaac atgagggata tgatcctttt 4020 cttggtggaa ttcaaaaata tgccactccc atgatgcccc tagatgaaga aattctttct 4080 aaggttgcac aagatatggt tgaggaatgg tttgattgtg ttgatgagga ggattccttt 4140 gaggaagttt ctttaagtgc agcactcaat ggtgttgagg gtttggacta tatggaaaga 4200 attcctcttg ccacatctga gggttttcct catgtgcttt cacgtaaaaa tggcgaaaaa 4260 ggcaaaagga gatttgtctc tggggatggt gaagagatga cattgattcc gggaaccagt 4320 gttgaagaag cttacaacaa gctaatagtt gaacttgaaa aaagtgttcc tacattggtt 4380 ggcattgaat gtcccaagga tgagaaactt cctcgtcgca aaatttttga caaacctaag 4440 acgcgctgct tcactattct ccctatggag tttaatcttg tggttcgtca gaagttttta 4500 aattttgtga ggttcattat gaagaaaagg gacaagctta gttgtcaagt tggaatcaac 4560 ccatactcca tggaatggac tggtttggcc aatagattat tgagtaaggg caacgatatt 4620 ctgtgttgcg attatgctag ttttgatggt ttgattacca agcaagttat gagcaagatg 4680 gcagaaatga taaacagtct ttgtggtggt gatgaaaaat tgatgcgtga aaggacacac 4740 ctgctgttgg cttgttgttc aaggatggca atttgtaaga aagatgtttg gagagttgaa 4800 tgtggaatcc cttctggatt tccgctcaca gttatttgca atagcatttt taatgagatg 4860 ctcattagat atagctatga aaaattactg cgccaggcta aagctccaag tatgttttta 4920 caatccttca aaaattttgt ttctttgtgt gtgtatggtg atgataactt tattagtgtt 4980 catgaatatg tcaagcctta ctttagtggt tctaaattga aaagctttct agctggtcat 5040 aatatcacca ttactgatgg tattgacaaa actagtgcaa ctttgcaatt tagaaagtta 5100 gcagattgtg attttctcaa gagaaacttt aagcagatgt ctaatgtttt gtgggtggct 5160 cctgaggata aggcgagttt atggtcacaa cttcattatg tttcgtgtaa taatctggaa 5220 atgcaagaag cttatcttgt caatctcgta aatgtgttac gagaattgta tttgcacagt 5280 ccagaggaag ctcgccaatt gagaaggaaa gctctctctc gtattgaatg gctgcaaaaa 5340 gctgatgtgc ctaccatagc acagattgaa gagtttcatt cgatgcagag gatgatgaat 5400 gctcctgatt caaatgataa tattgatcta ctgttgagca ttgatttgtt gggtttacaa 5460 ggagcaggta aagcttttcc aaacaagatt gtttttgatg ataagcttgt gttggctaac 5520 acacaagaat tctttgatgg aaattttcca gtagattctt ggttaccaat ttttgtgaat 5580 tgtctttatc ctgtaagtca attacctcca gaagctgtcg ttgtaaatgt tacatgtggt 5640 agtggacgtg gtggtttacc caccactgct tggattagtt ctgcagttaa caatcgctcc 5700 tcagatatca acaaaaagat tcgcacagca cttgggaaag gtaagaaaat tgtttttctt 5760 actagagttg atccttttcc agtagcttta ctggctgttc tttttggcgt taagaatgaa 5820 attctgagtt ctaacgccac caaccctatg ctgacgcgac ttcttgagaa ctgtaagagt 5880 ctcaaatatc tggttgatga gtgtcctttt gcatttgtga actagtatgt aatattttat 5940 tcacttaaat aaagcgcatt actatgtgca atgagtgtgt ttaaatataa aaaaaaaaaa 6000 //