ID AY744933; SV 1; linear; genomic RNA; STD; VRL; 3657 BP. XX AC AY744933; XX DT 01-OCT-2005 (Rel. 85, Created) DT 16-SEP-2010 (Rel. 106, Last updated, Version 3) XX DE Bean pod mottle virus segment RNA2, complete sequence. XX KW . XX OS Bean pod mottle virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Comovirinae; Comovirus. XX RN [1] RP 1-3657 RX DOI; 10.1094/PHYTO-97-0079. RX PUBMED; 18942940. RA Gu H., Zhang C., Ghabrial S.A.; RT "Novel Naturally Occurring Bean pod mottle virus Reassortants with Mixed RT Heterologous RNA1 Genomes"; RL Phytopathology 97(1):79-86(2007). XX RN [2] RP 1-3657 RX DOI; 10.1094/PHYTO-97-10-1255. RX PUBMED; 18943683. RA Zhang C., Gu H., Ghabrial S.A.; RT "Molecular Characterization of Naturally Occurring RNA1 Recombinants of the RT Comovirus Bean pod mottle virus"; RL Phytopathology 97(10):1255-1262(2007). XX RN [3] RP 1-3657 RA Zhang C., Ghabrial S.A.; RT ; RL Submitted (08-SEP-2004) to the INSDC. RL Plant Pathology, University of Kentucky, 1405 Veterans Drive, Lexington, KY RL 40546, USA XX DR MD5; 6b48189fbc0cecc27f93751e9561bb34. XX FH Key Location/Qualifiers FH FT source 1..3657 FT /organism="Bean pod mottle virus" FT /segment="RNA2" FT /strain="IL-Carbondale 1 (IL-Cb1)" FT /mol_type="genomic RNA" FT /country="USA" FT /db_xref="taxon:12260" FT CDS 443..3499 FT /codon_start=1 FT /product="large polyprotein 2" FT /note="processed into 50 kDa RNA2 replication cofactor and FT two coat proteins (41 kDa and 22 kDa)" FT /db_xref="GOA:Q3L2Z0" FT /db_xref="InterPro:IPR003181" FT /db_xref="InterPro:IPR003182" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q3L2Z0" FT /protein_id="AAW69770.1" FT /translation="MFASFIFSGDNKLTEKTIFNCGDLDILVVYYTIATQFRKFLPHYI FT RWHLYTLLIYILPSFLTTEIKYKRNLSNVHISGLFYDNRYKFWTKHDKNLALTEEEKME FT VIRNKGIPADVLAKRAHEFEKHVAHESLKDQIPAVDKLYSTKVSKFAKIMNLRQSVVGD FT LKLLTDGKLYEGKHIPVSNISAGENHVVQIPLMAQEEILSSSASDFKTAIVSKSSKPQA FT TAMHVGAIEIIIDSFASPDCNIVGAMLLVDTYHTNPENAVRSIFVAPFRGGRPIRVVTF FT PNTIVQIEPDMNSRFQLLSTTTNGDFVQGKDLAMVKVNVACAAVGLTSSYTPTPLLESG FT LQKDRGLIVEYFGRMSYVAHNINQPQEKDLLEGNFSFDIKSRSRLEKVSSTKAQFVSGK FT TFKYDIIGAGSHSSEEVSEEKNQGKTKHVDARLRQRIDPQYNEVQAQMETNLFKLSLDD FT VETPKGSMLDLKISQSKIALPKNTVGGTILRSDLLANFLTEGNFRASVDLQRTHRIKGM FT IKMVATVGIPENTGIALACAMNSSIRGRASSDIYTICSQDCELWNPACTKAMTMSFNPN FT PCSDAWSLEFLKRTGFHCDIICVTGWTATPMQDVQVTIDWFISSQECVPRTYCVLNPQN FT PFVLNRWMGKLTFPQGTSRSVKRMPLSIGGGAGAKNAILMNMPNAVLSMWRYFVGDLVF FT EVSKMTSPYIKCTVSFFIAFGNLADDTINFEAFPHKLVQFGEIQEKVVLKFSQEEFLTA FT WSTQVRPTTTLLADGCPYLYAMVHDSSVSTIPGDFVIGVKLTTIENMCAYGLNPGISGS FT RLLGTIPQSISQQTVWNQMATVRTPLNFDSSKQSFCQFSIDLLGGGILVDKTGDWITLV FT QNSPISNLLRVAAWKKGCLMVKIVMSGNAAVKRSDWASLVQVFLINSNSTEHFDACKWT FT KSEPHSWELIFPIEVCGPNNGFEMWSSEWANQTSWHLSFLVDNPKQSTVFDVLLGISQN FT FEIAGNTLMPAFSVPQANARSSENAESSA" FT CDS 749..3499 FT /codon_start=1 FT /product="small polyprotein 2" FT /note="processed into movement protein and two coat FT proteins" FT /db_xref="GOA:Q3L2Y9" FT /db_xref="InterPro:IPR003181" FT /db_xref="InterPro:IPR003182" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q3L2Y9" FT /protein_id="AAW69771.1" FT /translation="MEVIRNKGIPADVLAKRAHEFEKHVAHESLKDQIPAVDKLYSTKV FT SKFAKIMNLRQSVVGDLKLLTDGKLYEGKHIPVSNISAGENHVVQIPLMAQEEILSSSA FT SDFKTAIVSKSSKPQATAMHVGAIEIIIDSFASPDCNIVGAMLLVDTYHTNPENAVRSI FT FVAPFRGGRPIRVVTFPNTIVQIEPDMNSRFQLLSTTTNGDFVQGKDLAMVKVNVACAA FT VGLTSSYTPTPLLESGLQKDRGLIVEYFGRMSYVAHNINQPQEKDLLEGNFSFDIKSRS FT RLEKVSSTKAQFVSGKTFKYDIIGAGSHSSEEVSEEKNQGKTKHVDARLRQRIDPQYNE FT VQAQMETNLFKLSLDDVETPKGSMLDLKISQSKIALPKNTVGGTILRSDLLANFLTEGN FT FRASVDLQRTHRIKGMIKMVATVGIPENTGIALACAMNSSIRGRASSDIYTICSQDCEL FT WNPACTKAMTMSFNPNPCSDAWSLEFLKRTGFHCDIICVTGWTATPMQDVQVTIDWFIS FT SQECVPRTYCVLNPQNPFVLNRWMGKLTFPQGTSRSVKRMPLSIGGGAGAKNAILMNMP FT NAVLSMWRYFVGDLVFEVSKMTSPYIKCTVSFFIAFGNLADDTINFEAFPHKLVQFGEI FT QEKVVLKFSQEEFLTAWSTQVRPTTTLLADGCPYLYAMVHDSSVSTIPGDFVIGVKLTT FT IENMCAYGLNPGISGSRLLGTIPQSISQQTVWNQMATVRTPLNFDSSKQSFCQFSIDLL FT GGGILVDKTGDWITLVQNSPISNLLRVAAWKKGCLMVKIVMSGNAAVKRSDWASLVQVF FT LINSNSTEHFDACKWTKSEPHSWELIFPIEVCGPNNGFEMWSSEWANQTSWHLSFLVDN FT PKQSTVFDVLLGISQNFEIAGNTLMPAFSVPQANARSSENAESSA" XX SQ Sequence 3657 BP; 1050 A; 668 C; 742 G; 1197 T; 0 other; tattaaaatt ttcataagat ttgaaatttt gataaaccgc gatcataggt tgccgcacct 60 taaaaccgga aacaaaagca atcgttactt gatttcaaag acttctcaat ttctctctac 120 atttcttgta tacggctttc aaagtgaaag aaaatcactc tctgtgctgg tcacagactt 180 cgtgaatcat tttctttccg ctctcagttc atttgccaaa cactctccta tttgacatag 240 gacttcgtgt caggtttgaa cttctcttat ctctctttct cggttcttca tcatcttctg 300 ggctagtgct ctcactctcc tatctggtat aggacttcgt gagtagactt tcccatttct 360 tctcttttct cccacttctt cttgttctac acactgctgt tcaaagtggt cttatttgaa 420 aaacacttgg gcattggtgc aaatgtttgc ttcattcatc ttttctggtg acaataagct 480 tactgagaaa acaattttca actgtgggga tttagatatt ttggttgttt attatacaat 540 agccactcag ttcaggaagt ttcttcctca ttatattagg tggcatttgt atacgctgtt 600 gatttatatt cttccgtcct ttctcactac tgaaatcaag tacaagcgaa atttgagcaa 660 cgttcatatt tctggcttgt tctacgataa taggtataaa ttctggacta agcacgacaa 720 aaatcttgcc ttaacagaag aggagaagat ggaagtgatt agaaacaaag gtatccctgc 780 tgatgttctt gcaaagcgcg ctcatgaatt tgaaaaacat gtcgctcatg aaagtctcaa 840 ggatcaaatt cctgctgttg ataagttgta ctctactaag gttagtaaat ttgcaaaaat 900 tatgaatctt agacagagtg ttgttggtga tctcaaactt cttactgatg ggaagttgta 960 tgagggtaag cacattcctg tatctaatat tagtgcggga gaaaatcatg tggtgcagat 1020 acccttgatg gcacaggagg aaattctgtc ttctagtgca agtgatttca agactgctat 1080 agtaagcaaa agtagcaaac ctcaagctac agcaatgcat gttggggcta tagaaattat 1140 cattgatagt ttcgctagcc ccgattgcaa catagttggt gctatgcttc tggttgatac 1200 atatcacact aatcctgaaa atgcagtccg tagtattttt gttgcaccct ttaggggtgg 1260 tagacccatt cgggttgtta ctttcccaaa caccattgtg cagattgaac cagatatgaa 1320 ctcaaggttt caacttttga gtacaaccac caatggtgac tttgttcaag gaaaagatct 1380 tgcaatggtt aaggttaatg tagcatgtgc tgctgtaggc ttaacatcaa gttacactcc 1440 aactccattg ttagaatctg gtctgcagaa agataggggt cttattgttg aatattttgg 1500 aagaatgtct tatgttgctc ataacatcaa tcaacctcaa gagaaagatt tgttggaggg 1560 aaatttttcc ttcgatatta aatctcgctc caggttagag aaagtttctt ctacgaaggc 1620 acaatttgtc agtggaaaaa cttttaaata tgatataatt ggtgctggtt cacattcttc 1680 tgaggaagtt tctgaggaaa agaatcaggg aaagacaaag catgttgatg ctaggttgag 1740 gcaaagaata gatccacaat acaatgaagt tcaagctcaa atggaaacaa atctattcaa 1800 attgtctctt gatgatgttg agactccaaa aggttccatg ttagacctca agatttccca 1860 atctaagatt gcacttccca aaaatacagt tggagggacc attttgcgca gtgatctgtt 1920 ggcaaatttc ttgacagaag gcaattttag agcaagtgtt gatttgcaac gtacccaccg 1980 tatcaaagga atgattaaaa tggtggctac agttggcatt cctgaaaaca caggtatagc 2040 actggcttgt gcaatgaata gttccattag agggcgtgcc agttctgata tctataccat 2100 ttgttcgcaa gattgtgaac tatggaatcc tgcttgtaca aaagcaatga ccatgtcatt 2160 taatccaaac ccatgttctg atgcatggag tttggaattt cttaaacgta ctgggttcca 2220 ctgtgacatt atttgcgtta ctggatggac tgcaactcca atgcaagatg ttcaagttac 2280 aattgattgg ttcatttcct ctcaggagtg cgttcccaga acctattgtg ttttgaatcc 2340 acaaaatcct tttgtgttga atagatggat gggaaagctg acttttcctc aaggcacttc 2400 tcgaagtgtt aaaaggatgc ctctttctat aggaggagga gctggtgcta aaaatgccat 2460 tctcatgaat atgccaaatg cagttctttc aatgtggagg tactttgtag gagatcttgt 2520 tttcgaagtt tcaaagatga cctctcctta cattaaatgt acagtatctt ttttcatagc 2580 atttggaaat ttggctgatg ataccatcaa ttttgaagct tttcctcata aattggtgca 2640 gtttggagaa attcaagaaa aagttgtgct aaaattttca caagaggagt ttctcacagc 2700 atggtccact caggtgcgtc ctacaacaac cttgttggct gatgggtgcc catatttgta 2760 tgctatggtg catgatagtt cagtgtccac aataccaggt gattttgtca ttggtgtcaa 2820 gttgacgacc atagaaaaca tgtgcgcata tggacttaat cctggtattt caggttctcg 2880 tcttcttggc accattcctc aatctatctc tcagcagacc gtttggaatc aaatggcaac 2940 agtgagaaca ccattgaact ttgattcaag caaacaaagc ttttgccaat tttctataga 3000 tctccttggt ggaggcatct tagtagacaa aactggagat tggattacac ttgtgcaaaa 3060 ttctccaatt agtaatctat tgagagttgc tgcctggaag aagggttgtc tgatggttaa 3120 aattgtaatg tctggaaatg cagcagttaa gaggagtgat tgggcatcat tagtgcaagt 3180 gttcctaata aatagtaata gtacagagca ctttgatgca tgcaagtgga ctaaatcaga 3240 accacattcg tgggaattga tttttccaat agaagtgtgt ggtcccaata atggttttga 3300 aatgtggagt tctgaatggg ctaatcaaac ttcatggcat ctaagtttcc ttgttgataa 3360 tcccaaacaa tccacggttt ttgatgttct tttagggatt tcacaaaact ttgaaattgc 3420 tggaaacact ttaatgccag ctttctctgt tccacaggcc aatgccagat cttctgaaaa 3480 tgcagaatct tctgcatgat ctggtagtag cgttttcttt ttatttgttt ttgtttccaa 3540 tcaaataaag gaaattaggc atgaccctcg tctgagaatg ctctgcctat ttgaaaattt 3600 ccacacctct tttaagtatt gtaatggtat gtgaagtgtg tgttatttta aaaaaaa 3657 //