ID AY924391; SV 1; linear; genomic RNA; STD; VRL; 3339 BP. XX AC AY924391; XX DT 02-DEC-2006 (Rel. 90, Created) DT 07-NOV-2007 (Rel. 93, Last updated, Version 2) XX DE Bear Canyon virus strain AV A0070039 glycoprotein precursor and DE nucleocapsid protein genes, complete cds. XX KW . XX OS Mammarenavirus bearense OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Arenaviridae; Mammarenavirus. XX RN [1] RP 1-3339 RX DOI; 10.1016/j.virol.2007.05.031. RX PUBMED; 17624390. RA Cajimat M.N., Milazzo M.L., Hess B.D., Rood M.P., Fulhorst C.F.; RT "Principal host relationships and evolutionary history of the North RT American arenaviruses"; RL Virology 367(2):235-243(2007). XX RN [2] RP 1-3339 RA Cajimat M.N.B., Fulhorst C.F.; RT ; RL Submitted (08-FEB-2005) to the INSDC. RL Pathology, University of Texas Medical Branch, 301 University Blvd., RL Galveston, TX 77555-0609, USA XX DR MD5; 5984bd86f8c282a5e6e821f37227c5a6. DR EuropePMC; PMC2323605; 17624390. DR EuropePMC; PMC3086254; 20507759. DR EuropePMC; PMC3309595; 22377271. DR EuropePMC; PMC4111098; 24161346. XX FH Key Location/Qualifiers FH FT source 1..3339 FT /organism="Mammarenavirus bearense" FT /segment="S" FT /host="Peromyscus californicus" FT /strain="AV A0070039" FT /mol_type="genomic RNA" FT /country="USA:southern California" FT /db_xref="taxon:3052298" FT misc_feature 1..56 FT /note="5' non-coding region" FT primer_bind 1..19 FT CDS 57..1508 FT /codon_start=1 FT /product="glycoprotein precursor" FT /note="GPC" FT /db_xref="GOA:A0PJ25" FT /db_xref="InterPro:IPR001535" FT /db_xref="UniProtKB/Swiss-Prot:A0PJ25" FT /func_characterised="identical sequence" FT /protein_id="AAX99345.1" FT /translation="MGQLVSFIGEIPAIVHEALNVALIAVSIIAIMKGLINIWKSGLFQ FT LIMFLILAGRSCSISIGHHLELQHFIINSTSLLPSMPTLCRINATNSLIRGPFSAQWGL FT DIFIGDLTILVNPEPGSKTKRMTATNITGCFPNNEDPDSVAQVLSWFFRGVHHDFHLDP FT TILCDESVTVFRIQMNLTERMYCDRIVSKLARLFGSFGDYCSKVGKKLVIIRNVTWSNQ FT CHEDHVGSMQLILQNAHNQVMRFRKLQNFFSWSLVDSAGNSMPGGYCLEKWMLVASELK FT CFGNTAVAKCNINHDSEFCDMLRLFDYNKKAIVNLQDKTKAQLDSLIDAVNSLISDNLI FT TKNKIRELMNIPYCNYTKFWYVNHTGLNVHSLPKCWHVRNGSYLNESDFRNEWIIESDH FT LVSEILAKEYEERQKRTPLSLVDLCFWSTLFYTASIFLHLLHIPTHRHIIGEGCPKPHR FT LTSDSLCACGFFQLKGRPTRWARIP" FT misc_feature 1509..1590 FT /note="intergenic region; IR" FT CDS complement(1591..3279) FT /codon_start=1 FT /product="nucleocapsid protein" FT /note="N" FT /db_xref="GOA:A0PJ26" FT /db_xref="InterPro:IPR000229" FT /db_xref="InterPro:IPR012337" FT /db_xref="InterPro:IPR035083" FT /db_xref="InterPro:IPR035084" FT /db_xref="InterPro:IPR038115" FT /db_xref="UniProtKB/Swiss-Prot:A0PJ26" FT /func_characterised="identical sequence" FT /protein_id="AAX99346.1" FT /translation="MSDQVVHSFRWTQSLRRGLSNWTCPVKADVLNDTRALLSGLDFAK FT VASVQRMMRRDKRDESDLTSLRDLNKEVDSLMTMKSTQKNMFLKVGSLSKGELMELSGD FT LNKLKDKVQRTERPPGSGGQYQGNLTTTQLTRRGELLQFIGIQKAGRVGMNGVVKVWDV FT KDSSLMINQFGSMPALTISCMAEQGGETLNDVVQGLTDLGLLYTAKYPNLNDLEALSEK FT HPCLKVITQEESQINISGYNLSLSAAVKAGACLIDGGNMLETIKIDTSTFTTVIKTLLE FT VKARERMFVSSVPGQRNPYENILYKLCLSGEGWPYIASRSQIKGRAWDNTVVEFDSAPP FT RAPVPVRNGGAPLLGPLRPELEDQVRKGVEGLSPNLTTWIDIEGPPNDPVELAIYQPET FT QKYLHCYRRPNDIKSFKDQSKYCHGILLKDVENARPGLISTIIRYLPKSMVFTAQGEDD FT IKRLFDMHGRQDLKIVDVKLSAEQSRVFEELVWKKFEHLCDRHKGIVIKSKKKGSKPAS FT TNAHCALMDCIMFNAVLVGFVADEKPKRLLPIDILFREPDTTVVL" FT misc_feature 3280..3339 FT /note="3' non-coding region" FT primer_bind complement(3321..3339) XX SQ Sequence 3339 BP; 914 A; 736 C; 673 G; 1016 T; 0 other; cgcacagtgg attctaggcg atttttgttc acgcttcctg tttctctatc atttcaatgg 60 gacagcttgt ctccttcatt ggagaaatac cagccattgt gcacgaagcc ctgaatgtag 120 ctttaatcgc agtaagtatc attgcgatta tgaagggcct cataaatatc tggaaaagtg 180 ggttattcca attgataatg ttcctcatac ttgctgggag atcctgttca atttccattg 240 gacaccatct ggaacttcaa catttcataa taaacagcac atcactcctc ccttctatgc 300 ccacactgtg cagaatcaat gccaccaact ccctcataag aggtccattt tctgcgcagt 360 ggggccttga tatattcatt ggtgacctca ccattttagt aaaccctgag ccaggtagca 420 agacaaaacg gatgactgca accaacatta ctgggtgttt cccaaataat gaagatcctg 480 actctgtagc acaggtccta agttggtttt ttagaggtgt gcatcatgat ttccatttag 540 acccaacaat tctttgtgat gaaagtgtca ctgtcttcag aatccaaatg aacctaactg 600 aaagaatgta ctgtgatagg attgtttcaa aactagcaag actttttggt tcctttggag 660 actattgttc aaaggttgga aagaaattgg ttataatcag aaatgtaacc tggtccaatc 720 agtgtcatga agatcatgtc ggctccatgc aactcattct acaaaatgcc cataatcaag 780 tcatgagatt cagaaaactg caaaatttct tctcttggtc attggttgac tctgcaggaa 840 acagtatgcc tgggggatac tgtttggaga aatggatgtt ggtagcaagt gaattgaagt 900 gctttggtaa tacagctgtt gctaaatgta acatcaatca tgattctgaa ttctgtgata 960 tgttgaggct ctttgattat aataaaaagg caattgttaa ccttcaagac aaaacaaaag 1020 cacaacttga ttcacttatt gatgctgtta attctttgat ttctgacaat ctgataacta 1080 aaaataaaat aagagaactc atgaatattc cttattgcaa ctacacaaag ttttggtatg 1140 tgaaccacac aggtctaaat gttcattctt tgcctaaatg ttggcatgtg aggaatggca 1200 gttacctgaa tgagtcagac tttagaaatg agtggatcat cgagagtgat catcttgttt 1260 ctgagatatt agctaaagag tatgaagaaa ggcagaagag aacaccactg agtcttgttg 1320 acctctgttt ctggagtacc ctattctata cagcatcaat cttcctacat cttctgcaca 1380 ttcccaccca cagacacatc atcggcgagg gctgtcctaa acctcacaga ctgacatctg 1440 attcactctg tgcatgtggg ttctttcaac tgaaggggag gccaaccaga tgggcaagga 1500 taccttaaag cagatgaaat agaatagagt cgagactcgg cctccattgc tgcaccccaa 1560 tggggtgcag caatggaggc ctctcaatgc ttagaggacc acagttgtgt ctggttctct 1620 gaagagaatg tcaataggaa ggagtctttt gggcttctcg tctgccacaa atcccaccag 1680 aactgcattg aacatgatac aatccatcaa tgcacagtga gcatttgtag atgcaggttt 1740 tgagcctttc tttttgcttt tgatcacaat tcccttatgc ctgtcacaaa gatgttcaaa 1800 tttcttccaa acaagttcct caaagactct agattgctct gcacttagtt tcacatcaac 1860 aatctttaaa tcttggcgtc cgtgcatatc aaaaagtctc ttaatgtcat cttcaccttg 1920 agctgtgaag accatagact tgggaaggta tcttatgata gttgagatca atcctggtcg 1980 agcattctcc acgtccttca acaatatccc atggcagtac ttgctctgat ctttgaaaga 2040 cttaatgtca tttggtcttc gataacaatg taagtacttt tgagtctcag gttggtagat 2100 tgccagttct actgggtcat tgggtggtcc ttcaatgtca atccaagttg tgaggtttgg 2160 agataggcct tcgactccct ttcggacctg gtcttctaat tccggcctta atggtcctag 2220 taagggtgca cctccgtttc tcactggaac aggggccctt ggtggagcac tatcaaactc 2280 aaccacagtg ttatcccatg ctcttccctt tatttgtgaa cgagaagcta tgtaaggcca 2340 tccttctcca gagaggcaca atttataaag aatgttctca taagggttcc tttgaccagg 2400 aaccgaactt acaaacattc tttcccttgc tttcacttct aggagtgttt tgataactgt 2460 ggtgaaagtg gatgtgtcaa tcttgatggt ctcaagcata tttcctccat ctatcaagca 2520 tgcacctgcc ttcacagctg cagacaaact caagttataa cctgagatgt taatctgtga 2580 ctcctcttgg gtgattacct ttaagcaagg gtgtttttct gagagagcct caagatcatt 2640 gaggtttggg tattttgctg tataaagtag acccaaatct gttaatcctt gaacaacatc 2700 atttagggtt tcaccaccct gttctgccat acaagagata gtaagtgcag gcattgaacc 2760 aaactggttg atcataagtg aggaatcttt gacatcccat actttcacaa ccccgttcat 2820 cccgactctc cctgcctttt gaataccaat gaattgtagt agttcacctc tccttgtgag 2880 ttgagtggtg gtgagattgc cctggtactg accacccgaa cctggtggtc tctcagtcct 2940 ctgcaccttg tctttcaact tattgagatc accggacaac tccattagtt ctcccttgga 3000 gagtgagcca acctttagga acatgttttt ttgtgttgat ttcattgtca tcaatgaatc 3060 aacttcttta ttaaggtctc tcaaacttgt aagatcactt tcatctctct tgtccctcct 3120 catcattctc tgaacactag ccacctttgc aaaatccaat ccagacagta aagccctcgt 3180 atcattgagg acgtcagcct tcactggaca tgtccaattg gagagtcctc tcctgagtga 3240 ctgagtccag cgaaaggagt gcaccacctg atcagacatg atgaaggtag aagttgatgt 3300 tgatgcgtag aatctccaaa gcctaggatc cactgtgcg 3339 //