ID D00942; SV 1; linear; genomic RNA; STD; VRL; 3762 BP. XX AC D00942; XX DT 12-DEC-1991 (Rel. 30, Created) DT 08-OCT-2009 (Rel. 102, Last updated, Version 12) XX DE Tobacco necrosis virus D genomic RNA, complete genome. XX KW . XX OS Tobacco necrosis virus D OC Viruses; Riboviria; Tombusviridae; Procedovirinae; Betanecrovirus. XX RN [1] RP 1-3762 RA Coutts R.H.; RT ; RL Submitted (08-APR-1991) to the INSDC. RL Contact:Robert H.A. Coutts Imperial College of Science, Technology and RL Medicine, Department of Biology; SW7 2BB, Prince Consort Road, London SW7 RL 2BB, U.K. XX RN [2] RX PUBMED; 1856691. RA Coutts R.H.A., Rigden J.E., Slabas A.R., Lomonossoff G.P., Wise P.J.; RT "The complete nucleotide sequence of tobacco necrosis virus strain D"; RL J. Gen. Virol. 72:1521-1529(1991). XX RN [3] RA Offei S.K., Coutts R.H.A.; RT "Location of the 5'termini of tobacco necrosis virus strain D subgenomic RT mRNAs"; RL J. Phytopathol. 144:13-17(1996). XX DR MD5; b51bb2efbba27ec3ab59f2651426cfb2. DR EuropePMC; PMC3416697; 22559081. DR EuropePMC; PMC3554133; 23192876. DR EuropePMC; PMC3836746; 24278346. XX FH Key Location/Qualifiers FH FT source 1..3762 FT /organism="Tobacco necrosis virus D" FT /strain="D" FT /isolate="Rothamsted, U.K." FT /mol_type="genomic RNA" FT /db_xref="taxon:12056" FT misc_difference 1 FT /replace="a" FT /citation=[2] FT CDS 39..2216 FT /codon_start=1 FT /transl_except=(pos:645..647,aa:OTHER) FT /product="82K protein" FT /note="readthrough stop codon 645-647" FT /db_xref="GOA:P27209" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013707" FT /db_xref="UniProtKB/Swiss-Prot:P27209" FT /protein_id="BAA00785.1" FT /translation="MESLPIVLLSLISKAVVLICSLLTLIIQNSTAVTWGLACVWLAYV FT SFRFLFQVKITVHPAARETFESMVRKFQAESMFSEEATPCIVSVGDKDADLTPDPQRED FT IKIVKSSRRVSYAVRVAHVAKAQVGLLANSRANELVYSRLCREEMVKHGVRPSHIAHMV FT PLAVAACFIPLDSDFLAASIRQGEGMRERRALLGPSWEKXGGLLVTSGFTTPTWRGDPR FT GMLVTKGPPLAKPRKLYRFTGMGTHIRYGVHDHSLGNVRRGLVERLYMVEVKGELQPTP FT KPTPGAFNQMSRFSDRLSIHLPKTTRLTPREFLGFYTGRKLERYQKAVESLEMHPVREK FT DAWLSTFVKAEKLNITAKPDPAPRVIQPRDPRYNVEVGRFLRHSEEMLFKAINKTFGGR FT TIFKGLSSDQAGEEFKTLWDSFKDPVGIGMDASRFDQHISKDALEFEHKMWLSMFPKSE FT RAELARLLSWQINNRGLARCPDGEIRYRVEGCRMSGDMNTSSGNCYIMCATVHNWCDNI FT KHIKHFRLANNGDDCMLVVERSDEKKVRNGLIEYYATLGFTMKVEPTVDVLERLEFCQT FT RPVLVDGKYRMVRNLHQSMSKDLHSLHDLDSSAARNAWVTAVGTGGRCMNDGVPVLKEF FT FKQFPDYNLEVKKGSDMAQKLRDDWKYKFNRTAAFQDLIPTQESRYSFWLAFGLLPDEQ FT IALENGFSPLKMEIVNEQIQEETSLLQFSGA" FT CDS 39..647 FT /codon_start=1 FT /product="22K protein" FT /db_xref="GOA:P27209" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013707" FT /db_xref="UniProtKB/Swiss-Prot:P27209" FT /protein_id="BAA00786.1" FT /translation="MESLPIVLLSLISKAVVLICSLLTLIIQNSTAVTWGLACVWLAYV FT SFRFLFQVKITVHPAARETFESMVRKFQAESMFSEEATPCIVSVGDKDADLTPDPQRED FT IKIVKSSRRVSYAVRVAHVAKAQVGLLANSRANELVYSRLCREEMVKHGVRPSHIAHMV FT PLAVAACFIPLDSDFLAASIRQGEGMRERRALLGPSWEK" FT misc_difference 142 FT /replace="t" FT /citation=[2] FT CDS 2213..2401 FT /codon_start=1 FT /product="7K protein" FT /db_xref="UniProtKB/TrEMBL:Q9YPI4" FT /protein_id="BAA00787.1" FT /translation="MKTHQFHLKIESRWKIQKMSVVGETNESIVRRGSRRVAIKKLAKL FT PCAKKVMLSRTWVLQFQ" FT CDS 2251..2448 FT /codon_start=1 FT /product="7K protein" FT /db_xref="GOA:P27211" FT /db_xref="InterPro:IPR035284" FT /db_xref="UniProtKB/Swiss-Prot:P27211" FT /protein_id="BAA00788.1" FT /translation="MENTENVRSGRNQREYSKERQQEGGYKEVSKAAVRKEGDVKQDMG FT PSVSMTVVGEKVEFTQHFHF" FT misc_difference 2294 FT /replace="" FT /citation=[2] FT misc_difference 2376 FT /replace="" FT /citation=[2] FT misc_difference 2384 FT /replace="" FT /citation=[2] FT CDS 2448..2648 FT /codon_start=1 FT /product="7K protein" FT /db_xref="GOA:P27212" FT /db_xref="UniProtKB/Swiss-Prot:P27212" FT /protein_id="BAA00789.1" FT /translation="MAYIIVHQRDPFPLLGVWIIVIIIVAVIGLLNQSPPERPYQTFKE FT DNSKIQYITIGGSTTTKVSTS" FT CDS 2650..3456 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:P27210" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/Swiss-Prot:P27210" FT /protein_id="BAA00790.1" FT /translation="MPKRGRVGLAESFQSKTKKQKENEYNAFQREKMERALANNARAAP FT KSSGMTFRPLTVPVAGSVIYSRPRVPQVRTNQMSTFVVNTELVANITLAAAGAFSFTTQ FT PLIPSFGSWLANIADLYSKWRWISCSVVYIPKCPTSTQGSVVMAIVYDAQDTVPTTRTQ FT VSQCYQSITFPPYAGYGGASALNHKGSGGESLVSTLDTNRVDKRWYSTIGNAAFTALTS FT IDKNQFCPATAIIAGDGGPAAATAVGDIFMRYDIEFIEPVNPSINV" XX SQ Sequence 3762 BP; 1032 A; 790 C; 952 G; 988 T; 0 other; gatacctaac cagtgtctca gtgattaagt aatcagctat ggagtcctta ccaattgtcc 60 tattatccct tatttccaag gcagttgtgc tcatctgtag tttgttaacc ctaataatcc 120 aaaattccac agcagtgaca tggggcctag catgcgtatg gttggcatat gtttcgttca 180 ggttcttatt ccaagtcaag atcacagtcc accccgcagc ccgcgagaca tttgagagca 240 tggtgcgcaa gttccaagct gagtctatgt ttagcgagga agccacacct tgcatagtca 300 gcgtaggtga caaggacgca gatctcaccc ccgatccaca aagagaggat ataaaaattg 360 tgaagtcttc gaggagagtg agttacgcag ttcgtgttgc ccatgttgcc aaagcccagg 420 tagggttact cgccaacagc agagctaatg aattggtcta cagccggttg tgcagggaag 480 agatggttaa acatggagtg agacccagcc atatagcaca catggtgcca cttgctgtgg 540 ctgcatgctt cattcctttg gatagtgact ttctagccgc ttccatcaga cagggtgaag 600 gcatgaggga gaggagggcc cttctagggc cctcgtggga gaaataggga ggcctattag 660 tcacaagcgg attcacaacg ccaacatggc gtggtgatcc gaggggtatg cttgtgacta 720 aaggacctcc cctcgcgaaa ccccgtaaat tgtaccgatt tactgggatg ggaacacata 780 ttcggtacgg agtgcatgat cactcattgg gcaatgttcg gcggggacta gtggaaagat 840 tatatatggt tgaagttaaa ggagaacttc aaccaactcc aaagcccacc cccggagcgt 900 tcaaccagat gtcccggttc agtgaccgac tgagtatcca tctgcctaag accacccgct 960 tgacacctag ggaattcctt gggttttata cgggtcgcaa gttggagaga taccagaagg 1020 ctgttgagtc gttagagatg catcccgtga gggaaaagga tgcctggctt agcacgttcg 1080 tgaaggctga aaaattgaat atcacagcca aacccgaccc cgctccacgg gtgatacaac 1140 ctagggatcc taggtataat gtggaggtgg ggcgcttttt gcgacacagt gaggaaatgt 1200 tgttcaaggc cattaataaa acatttggcg gaaggactat tttcaagggc ctcagctctg 1260 atcaagctgg ggaggagttt aaaacgctct gggattcatt caaggatcca gtcggcattg 1320 gtatggatgc ttctagattt gaccaacaca tatctaaaga tgctcttgag tttgagcaca 1380 agatgtggct tagcatgttc cctaaaagtg agcgtgcaga gttagctcga ttgttgagtt 1440 ggcagattaa taatagaggc ctagcccggt gtccggatgg ggagattaga tacagagtgg 1500 aagggtgtag aatgtctggg gacatgaata cctctagcgg aaattgttac atcatgtgtg 1560 caacagtgca taattggtgt gataatatca aacatattaa gcatttcaga cttgccaata 1620 atggtgacga ctgcatgctg gttgttgaac gcagtgatga gaagaaagtc cgtaatgggc 1680 taattgagta ctatgcaaca cttgggttta cgatgaaggt tgagcccaca gtggatgtat 1740 tggaaaggtt agagttttgc cagacaagac ctgttttagt ggatggcaag taccgaatgg 1800 tgcgaaacct tcatcagagc atgtctaaag atctacactc attgcatgac cttgatagta 1860 gtgccgcgcg taacgcatgg gttacagccg ttggaactgg gggaaggtgt atgaatgatg 1920 gggtgcctgt tctcaaagaa tttttcaaac agtttccaga ttataatttg gaagtcaaga 1980 aaggttctga tatggcacag aagttgagag atgattggaa gtataagttc aataggactg 2040 ctgcttttca ggatctcatc cccacccagg aatcacgtta ctccttttgg cttgcgttcg 2100 ggttgttacc tgatgaacaa attgccctgg aaaatggctt ctcccctttg aagatggaga 2160 tagttaatga gcagatccag gaggagacat ctctcctcca gttttctggg gcatgaaaac 2220 tcaccaattt caccttaaga tcgagtctag atggaaaata cagaaaatgt ccgtagtggg 2280 agaaaccaac gagagtatag taaggagagg cagcaggagg gtggctataa agaagttagc 2340 aaagctgccg tgcgcaaaga aggtgatgtt aagcaggaca tgggtccttc agtttcaatg 2400 acggtggtgg gtgagaaagt tgaattcacc caacattttc atttttaatg gcttacatta 2460 ttgttcatca acgtgatcca tttccccttc taggggtttg gatcattgtt atcatcattg 2520 tcgcagttat tggtttattg aaccaaagcc ctcctgaaag accttaccaa actttcaaag 2580 aagataattc taagattcaa tacattacaa tcggaggatc gaccactaca aaagtgtcta 2640 ctagttaata tgcctaagcg aggaagagtt ggattggctg aatcttttca gtccaagaca 2700 aagaagcaga aggagaatga atacaacgcg tttcagagag agaaaatgga acgagctctg 2760 gcgaataatg cccgcgcagc accaaagagt tctgggatga ctttccgccc cttaactgtt 2820 ccggttgctg ggtctgttat ctatagcagg ccacgcgtgc cacaggtccg caccaaccag 2880 atgtccactt ttgtggtcaa tactgagttg gttgctaata ttacattggc agctgcggga 2940 gcttttagtt tcacaacaca accgttgatt cctagttttg gatcttggtt agcaaatatc 3000 gcggatctct attctaaatg gagatggata tcatgttccg ttgtgtatat accaaaatgt 3060 cctacttcta ctcaaggaag tgtggtcatg gcgatagtat acgacgcaca agatactgtt 3120 ccaactacac gtacacaagt ttcacaatgc tatcaatcca tcacattccc tccatatgct 3180 ggatacggag gagcctctgc actgaaccat aagggttctg gtggtgaatc gttggtgtcc 3240 acgttggata ccaatagagt ggataaacga tggtacagca ccatcggtaa cgctgctttt 3300 actgctctca catcaattga caagaatcag ttctgtccag ccacagctat tattgctggg 3360 gatggaggac ctgctgctgc cactgctgtc ggagatattt tcatgcgata cgacatcgag 3420 ttcattgaac cggtcaatcc ctccatcaat gtttaattgc tttcatagat ccgtcttccg 3480 ggagacgtta agaagacacc cgataaaaat agtaagtaga gttgtggcgt gacaacccac 3540 aactgcatct ctttgcttat ctaattacaa tatatgttga cgtacaagcc ggatcctggg 3600 aaacaggttt aacgggctca ctgtggtggt gggccgtcga tacacttgta tgtgccccaa 3660 tattggttgt cgataagcgt cctgacatgg ctccatgcaa cagcatgggg gggtccagag 3720 tcagtcccct ctttatttac ctagagatct ctctaggaac cc 3762 //