ID D12517; SV 1; linear; genomic RNA; STD; VRL; 5966 BP. XX AC D12517; D01227; XX DT 07-JUL-1992 (Rel. 32, Created) DT 18-JAN-2008 (Rel. 94, Last updated, Version 9) XX DE Strawberry mild yellow edge virus genes for 25K protein, 13K protein, 150K DE protein, coat protein, 11K protein, 8K protein, complete cds. XX KW . XX OS Strawberry mild yellow edge virus OC Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus. XX RN [1] RP 1-5966 RA Jelkmann W.; RT ; RL Submitted (06-NOV-1991) to the INSDC. RL Contact:Wilhelm Jelkmann Institute for Plant Protection in Fruit Crops, RL Federal Biological Research Centre; Schwabenheimer Strasse 101, Postfach RL 1264, Dossenheim D-69221, Germany XX RN [2] RX PUBMED; 2191082. RA Jelkmann W., Martin R.R., Lesemann D., Vetten J.H., Skelton F.; RT "A new potexvirus associated with strawberry mild yellow edge disease"; RL J. Gen. Virol. 71:1251-1258(1990). XX RN [3] RX PUBMED; 1339469. RA Jelkmann W., Maiss E., Martin R.R.; RT "The nucleotide sequence and genome organization of strawberry mild yellow RT edge-associated potexvirus"; RL J. Gen. Virol. 73:475-479(1992). XX DR MD5; d6724e02f336f9cc1f54f908049d38ea. XX CC The molecule which was sequenced is cDNA to dsRNA isolated from CC SMYEAV diseased plants. The dsRNA represents a replicative form of CC the viral genomic RNA. XX FH Key Location/Qualifiers FH FT source 1..5966 FT /organism="Strawberry mild yellow edge virus" FT /isolate="MY-18" FT /mol_type="genomic RNA" FT /clone="p398, p309, p572, p24, p417, p463, p326, p43, p441" FT /note="synonym: Strawberry mild yellow edge-associated FT virus" FT /db_xref="taxon:12187" FT CDS 75..4046 FT /codon_start=1 FT /product="150K protein" FT /note="motif GDD (known sequence motif for viral RNA FT polymerases) occurs at position 3660-3668." FT /db_xref="GOA:P28897" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/Swiss-Prot:P28897" FT /protein_id="BAA02082.1" FT /translation="MATRVASVFSSLTDVGIKAALQDEAYKRIKSNLREAEIINPYSVD FT ARGAEALEELAIITNPHSIRLHTHAAAKSIENQMLNIVGHALPKEPVTFLFLKRGKLRY FT LSRGRIKDIFQNQEIEPRDVARYEHKTIVQKSLLLNTRVAYISDTLHFLRPRYIIDLFS FT QNVFLDVLYATVVLPVEASFKHPSQNPAIYTINYNYGGFQYLPGNHGGGAYSHEFEDLD FT WLKYGKFIYRWVDYRTDPISGKRVGTPKELVVTCQLVESLGANHLFIFKRGDLKTPRVR FT TFAKDKSVTFPDLFYPEEENANFPVDAELATKLFLYVKTLKTVTSQDVHGKLRQLLRSD FT ELTRFSPMQLTHMVNYFMVVAHLDSCNDYSMLLGSSVWTQLTAPIQSKLRKLTEFFKGK FT SSFGKFCAALKWKTATYSLEVVDYVETRRDSFEPHPLDSLPDADDRDVNYDTDVSEDEA FT DEKPAPKAPTSTPVPDTTPPASPAAPADAEYTQCWAAWDTVIRKHGFKGNQAQFDDDGN FT LITPIAEIKSLPKDSPRCAPELIKSLQEIARTPTLVEIDSKRSNAFGSDVKNGRIGMIL FT KKQPNDWRLSFAAKCEHTSRKVHACVIHGAGGSGKSQRLQDWMRSLKKNSRECTVILPT FT AELRTDWVNKVPKQSLDTFKTWEKGLVQPPNRVVILDDYGKLPAGYPEALCANYPNIEL FT LILTGDSRQSVHNEHNKQAATASLESNIEFWTQYCRFYVNATHRNVKRLANALGVYGER FT DEPLKVTCSSHVYDGWPVLAPGLLKAGNLAECGRRAFTYAGCQGLTAPRVQILLDNDTP FT LCSQRVMYTALSRAVNEIHFVNTGPSGDDFWTKLDCTPFLKTFLELSREIEIPEAKCQE FT TAPAEATVKTHFPVENPNLVLEPYVEKMAEKFDRELYSKEYGYSNAIQTEDPVIQLFPH FT QQAKDDTLMWATIDQRLAITTKSENETEFALKKDIGDLLFINYHRAMKLPKNPIPFDKD FT LWQSCKNEVQKTYLSKDVGSIVNGVARQDPDFPINEIKLFLKSQWVKKVEKLGMVVKPG FT QTIASFAQAPVMLYGTMARYMRRMREVYQPSNIFINCEKTPADLDEWAKANWNFEGLAH FT SNDFTAFDQSQDGAMLQFEVIKAKFHNIPSDIINSYVELKTNAKVFLGVLKIMRLSGEG FT PTFDANTECSIAYHHTKYWVEPDVAQVYAGDDSAQDRTPVPRPSFNKIKDRLGLVSKPL FT THRQVPGDFATFCGWIITPKGVIKDPLKLYASLQLAIRRGKSHEVALSYAHDAGLAYRL FT GDDLHSVLTFDEAHAHQCTVRDLVKLNKVEVLRPIWALD" FT regulatory 4048 FT /note="putative subgenomic promoter starts here" FT /regulatory_class="promoter" FT CDS 4096..4785 FT /codon_start=1 FT /transl_except=(pos:4096..4098,aa:Met) FT /product="25K protein" FT /note="ATT codon is a possible initiation codon for 25K FT protein." FT /note="thought to be functional in cell-to-cell spread of FT virus" FT /db_xref="GOA:Q00846" FT /db_xref="InterPro:IPR027351" FT /db_xref="UniProtKB/Swiss-Prot:Q00846" FT /protein_id="BAA02083.2" FT /translation="MVEFTKRLLLERNFERTNRPITGPIVVHAVAGAGKSSVINTVSLT FT FQLICWTTLPEEKASFNCLHLRHLDGPAFPGAFVDEYQLADTDLSEAAFLFGDPLQYPG FT PAAQVPHFVKLFSHRCGLNSASLIRELGIAFEASKLDSVQHLDPYSSDPEGTILAFEPE FT VQAALASHSLDFLCLDEFRGKQWPVCTLYVSTKNLCDLDRPSVYVALTRHYERLLIMSF FT DAADTSA" FT CDS 4763..5089 FT /codon_start=1 FT /product="13K protein" FT /db_xref="GOA:Q00842" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/Swiss-Prot:Q00842" FT /protein_id="BAA02084.1" FT /translation="MPLTPPPDHSITYRILAVGLCSCCAIYAATRSTLPHTGDNLHSLP FT YGGKYSDGTKSICYSGPGPTPDIPTHLPALLVLVLVVAIYASSRLDFSVNYRCSCRVHN FT RSGQ" FT CDS 5016..5243 FT /codon_start=1 FT /product="8K protein" FT /note="thought to be functional in cell-to-cell spread of FT virus" FT /db_xref="GOA:Q00848" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/Swiss-Prot:Q00848" FT /protein_id="BAA02085.1" FT /translation="MRVLDLILALITAAVVGYTIALVSNSGCYVHFDGRSATTTCPPGP FT WVESIANGLYTAGLARPHPEPECERRQSSW" FT CDS 5113..5841 FT /codon_start=1 FT /product="coat protein" FT /note="second methionine codon at 5170-5172 possibly could FT initiate CP synthesis" FT /db_xref="GOA:P28899" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/Swiss-Prot:P28899" FT /protein_id="BAA02086.1" FT /translation="MGDQPRPPVPPAPGSNPLPMGSTPPVLPGRTPNPNANVANQVGDP FT FRVLTPEELAAPISAASNKVATREQILGIVADLNALGFVGDPALGLFDLAFHCYDIGSS FT PSAQPVGPSPFGCSRMQVAAVVRNHCTLRQLCMFYAPSVWNKAVRDNRPPGNWSNLQFT FT PETKFAAFDFFDGVLNPASQEVPLWRQPTPQEIYASATHKDVATYRAASKAHDRISNST FT LLTKGASRSTPPALLPGPDA" FT CDS 5408..5728 FT /codon_start=1 FT /product="11K protein" FT /db_xref="UniProtKB/TrEMBL:Q88468" FT /protein_id="BAA02087.1" FT /translation="MTLALHPLPNRSVLHPSAARACKSPPSFEITALSASSVCSTPQAS FT GTKQSGTTVPLAIGAISSLHRRPSSLPLISSMVCSIQPAKKSRFGVSPPPRRFMPQPRI FT RM" FT polyA_site 5966 XX SQ Sequence 5966 BP; 1488 A; 1646 C; 1382 G; 1450 T; 0 other; atttatccaa cacactctag accaggccct cctgacgtac acaacaactg cctgccgcag 60 tgcactgtac ctcgatggca actagagtag cgagcgtatt ctcctccctc acggacgttg 120 gaattaaagc ggccttacaa gatgaggcat acaagcgcat aaaatccaac ttacgtgaag 180 ccgaaatcat caacccctac tcggttgatg cccggggtgc tgaagccctg gaagaacttg 240 ccatcatcac gaacccacac tccatcaggc tacataccca tgcagccgca aagagcattg 300 aaaaccagat gctcaacatt gtgggccatg cgctgcctaa ggaaccagtc acattccttt 360 tcctgaagcg cggcaagtta cggtatctct cccgtggaag aatcaaggac attttccaaa 420 atcaggagat cgaaccgcgt gacgtagcta ggtacgagca caagactatt gtacagaagt 480 ctttgctttt aaatactaga gtagcataca ttagtgatac tttacatttc cttagaccta 540 ggtacataat agatttgttt tcccagaatg tctttctcga cgttctatat gctactgtgg 600 tgctgcctgt agaggccagt ttcaagcacc cctcacaaaa ccccgccatc tacacgatca 660 actataatta tggggggttc caatatttac ctgggaacca tggaggcgga gcctactcac 720 atgagttcga agatcttgac tggctcaagt atgggaaatt catctacaga tgggtggatt 780 accgtactga ccccatctcg ggtaaaaggg tcggcacccc gaaagagctt gtggtcacgt 840 gccaacttgt tgagtctctt ggtgccaatc acctcttcat cttcaagaga ggagacttga 900 agactccacg cgtccggacc tttgcaaagg acaaaagcgt gactttcccg gatctgtttt 960 atccggaaga agagaatgcc aacttcccgg tggacgctga gttagccacc aaactcttcc 1020 tgtacgtcaa gaccctcaag actgtcacca gtcaagatgt acatgggaag ttgcgccaac 1080 tgttgaggag tgatgaactc acccggttca gtccaatgca actgacacac atggtcaact 1140 acttcatggt agtcgcccac ctggacagtt gcaatgatta ctccatgctt ctcggcagta 1200 gtgtatggac tcagctcaca gccccaattc agtctaaact caggaaacta actgaattct 1260 tcaagggcaa gtcctccttc ggcaaattct gtgccgcttt gaagtggaaa acagccactt 1320 actctctgga ggtcgtagac tacgttgaaa cgcgtaggga ctccttcgaa ccccaccctc 1380 tggacagtct tccagacgct gacgaccggg acgtaaatta tgataccgac gttagtgaag 1440 atgaggcgga tgagaaacct gcgcccaaag cgccgacctc taccccagtt cccgacacaa 1500 ctccacccgc gagcccggca gccccagctg atgccgaata cacacaatgt tgggctgcct 1560 gggacactgt tatcaggaaa cacgggttca agggcaacca ggcccaattt gatgatgatg 1620 ggaatctcat cacccccatt gcagagatca agtctctgcc gaaagattcc ccgcggtgtg 1680 cgcctgaact aattaagagt ttgcaggaaa tagcgcgtac acccactttg gttgaaatag 1740 actccaaaag gagcaatgct ttcggatccg atgttaagaa tgggcgaatc ggaatgatcc 1800 tgaagaagca gcccaatgat tggcgccttt cttttgctgc aaagtgtgaa cacacgtcaa 1860 ggaaagtgca tgcctgcgtc atccatggtg cgggaggctc aggaaagtca caacgcctcc 1920 aagattggat gaggtctctg aagaaaaatt ccagagaatg cacagttatc ctcccaactg 1980 cagagctgcg aaccgactgg gttaataaag tacccaagca aagcttggac actttcaaga 2040 cttgggaaaa aggactggtg caaccgccga acagggtagt tatacttgat gattatggga 2100 aattacccgc agggtatcct gaggcccttt gtgccaacta cccgaacatt gagctcctga 2160 tcctgacagg agactccagg cagtcagttc ataacgaaca caacaagcag gctgccacag 2220 catcccttga atccaatatc gagttctgga cccaatactg ccgtttctac gtaaacgcca 2280 ctcaccgcaa tgttaagcgt ctcgccaacg ccttgggtgt ttacggggaa cgtgatgaac 2340 ccctcaaagt gacctgcagt agtcacgttt atgatggttg gccggtcctg gctcctggcc 2400 ttctcaaagc cggcaacctt gccgaatgtg ggcgccgcgc ctttacatat gctggctgcc 2460 aaggcctcac tgctcctaga gtgcaaattt tgctcgacaa cgacactccc ctgtgttcac 2520 agagagtgat gtatactgca ctctcaaggg cggtgaatga gatccacttt gtcaacactg 2580 gcccgtctgg agatgatttc tggacaaagt tggactgcac tcccttcttg aaaactttcc 2640 tagaactgtc tagagaaatt gagattcctg aagcgaagtg ccaagagact gctcccgctg 2700 aagcaaccgt gaagactcat ttcccggttg aaaatccaaa tttggtactc gaaccatacg 2760 tcgagaaaat ggccgaaaag ttcgatagag aactgtactc taaagagtat ggttattcta 2820 atgccattca gactgaagac ccggtgattc agttgttccc acaccagcaa gctaaggatg 2880 acaccctgat gtgggccacc attgatcaaa gactggccat cacgaccaag tctgagaacg 2940 aaactgagtt cgctctcaaa aaggacatcg gggacctgct cttcatcaac taccaccgtg 3000 ccatgaaatt gccaaagaac ccaatccctt tcgacaagga cttgtggcag tcttgcaaga 3060 atgaagtcca aaagacttat ctttcgaagg atgtcggttc tatagttaac ggtgttgcca 3120 ggcaagaccc agactttcca atcaatgaaa tcaagctctt cctgaaaagt caatgggtca 3180 agaaagttga gaaactcggt atggtagtga aaccgggcca gactatcgca tccttcgctc 3240 aagccccggt gatgttgtac ggtaccatgg cgcgctacat gaggcgcatg cgggaggttt 3300 accagccgtc aaatatcttc attaattgtg agaaaacccc cgctgacttg gatgagtggg 3360 ccaaggccaa ttggaatttc gaaggcctcg ctcactccaa tgacttcact gcctttgacc 3420 agtctcaaga tggagctatg ctacaattcg aggtcattaa ggcaaagttt cacaacatcc 3480 ccagtgacat tatcaacagt tatgtggaac ttaagaccaa tgccaaggtc tttctcgggg 3540 ttttgaagat catgaggttg tcaggagagg ggcctacttt cgatgcaaac acagagtgct 3600 ccattgcata tcaccataca aaatattggg ttgagcctga tgtcgctcaa gtgtatgctg 3660 gtgatgattc tgcccaggat aggacccccg tacctaggcc cagcttcaac aagatcaaag 3720 acaggctagg gctggtctca aaacctctga ctcatcggca ggtcccagga gactttgcca 3780 cgttttgcgg ctggataata acgccgaagg gagtgatcaa ggatcctctg aaactctacg 3840 cctccctgca attagctatc cgccgtggaa agtctcatga ggtcgcgctt tcctatgctc 3900 acgacgcagg tctcgcttat cgcctcggcg acgacctgca ctctgtgttg accttcgatg 3960 aggcccatgc tcaccaatgt actgttagag acttggtgaa gttaaataaa gtagaagtgt 4020 taaggcccat ttgggccctt gattaggggt taagttacca ttctctcgaa gttcaaactg 4080 gagcgtccca atactattgt cgagttcacg aagcgtctgc ttttggaacg caactttgag 4140 agaactaacc gtcccatcac tggccctatt gttgtacatg ctgttgccgg tgctgggaag 4200 tctagtgtca ttaacaccgt gtccctcact tttcagctca tctgctggac cacgctgcca 4260 gaggaaaaag cctccttcaa ctgcctccat ctccgccatc tcgacggacc cgctttcccg 4320 ggagccttcg tagacgagta tcagctcgct gacaccgatc tatctgaagc tgcgtttctc 4380 ttcggagatc cgctacagta cccgggacct gctgctcaag ttccgcattt tgtgaagctg 4440 ttctcccatc gttgtgggtt gaactctgcc tcgctgatcc gcgaattggg cattgctttt 4500 gaggccagta aactcgattc agtgcagcac ttggacccct actcctctga tcctgaaggt 4560 accattctcg ctttcgagcc tgaggtacaa gctgctcttg caagccactc cttggatttc 4620 ctctgcctgg acgaattccg aggcaaacag tggccagttt gcaccctgta cgtgtccaca 4680 aagaacctct gtgacttaga cagaccatct gtctatgttg cactaacaag acactacgag 4740 cgcctcttga tcatgagctt cgatgccgct gacacctccg cctgaccata gtattaccta 4800 taggattctt gctgttggcc tttgctcctg ttgtgctatt tacgccgcca cccgatctac 4860 cttgccacac actggtgaca acctgcattc actgccatac ggagggaagt attccgacgg 4920 aaccaaaagc atttgctact ctggtcccgg acctacccct gacataccta cacatctgcc 4980 tgcgttgcta gttttggtct tagtcgtcgc gatttatgcg agttctagac ttgattttag 5040 cgttaattac cgctgcagtt gtagggtaca caatcgctct ggtcagtaat tctggttgtt 5100 acgtacattt tgatgggaga tcagccacga ccacctgtcc ccccggcccc tgggtcgaat 5160 ccattgccaa tgggctctac accgccggtc ttgcccggcc gcaccccgaa cccgaatgcg 5220 aacgtcgcca atcaagttgg tgaccccttc cgagtgctca cccccgagga gctcgccgca 5280 cccatctccg cagctagtaa caaggttgcc actcgcgagc agattctcgg cattgtagcg 5340 gacttgaacg ctttgggctt cgtcggagat cccgccttag gcctcttcga cctagccttc 5400 cactgctatg acattggctc ttcaccctct gcccaaccgg tcggtccttc acccttcggc 5460 tgctcgcgca tgcaagtcgc cgccgtcgtt cgaaatcact gcactctccg ccagctctgt 5520 atgttctacg ccccaagcgt ctggaacaaa gcagtccggg acaaccgtcc ccctggcaat 5580 tggagcaatc tccagtttac accggagacc aagttcgctg cctttgattt cttcgatggt 5640 gtgctcaatc cagccagcca agaagtcccg ctttggcgtc agcccacccc ccaggagatt 5700 tatgcctcag ccacgcataa ggatgtagct acttaccgtg ccgctagtaa ggcacatgat 5760 cgcatttcaa attccacgct cctgactaaa ggagctagta gatccactcc gcccgcgctc 5820 ttgccgggcc ccgatgctta acatcagtgg aataggctta aaatgggagt ttcttctcac 5880 ttcttctacc cagctccaat gagtgccatg aagtgaatat agtactactt aaccgtactt 5940 acataggttt gtttttcttt ttcctt 5966 //