ID   DQ067583; SV 1; linear; genomic RNA; STD; VRL; 1371 BP.
XX
AC   DQ067583;
XX
DT   20-JUN-2005 (Rel. 84, Created)
DT   20-JUN-2005 (Rel. 84, Last updated, Version 1)
XX
DE   Cocksfoot streak virus isolate UK-1-04 FHCP16B HC-Pro protein (HC-Pro)
DE   gene, partial cds.
XX
KW   .
XX
OS   Cocksfoot streak virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1371
RA   Naylor M., Thien H., Edwards M.L., Cooper J.I., Wang H.;
RT   "The dynamics of selection pressures acting on a viral suppressor of RNA
RT   silencing in the field";
RL   Unpublished.
XX
RN   [2]
RP   1-1371
RA   Naylor M., Thien H., Edwards M.L., Cooper J.I., Wang H.;
RT   ;
RL   Submitted (19-MAY-2005) to the INSDC.
RL   Plant Virology, Nerc/Centre For Ecology and Hydrology (Ceh), Mansfield
RL   Road, Oxford OX1 3SR, Uk
XX
DR   MD5; f1410af2189390963a3fa992cf169f30.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1371
FT                   /organism="Cocksfoot streak virus"
FT                   /isolate="UK-1-04 FHCP16B"
FT                   /mol_type="genomic RNA"
FT                   /country="United Kingdom:England"
FT                   /isolation_source="Wytham Woods Yellow Ant Reserve,
FT                   Oxfordshire"
FT                   /db_xref="taxon:192452"
FT   gene            <1..>1371
FT                   /gene="HC-Pro"
FT   CDS             <1..>1371
FT                   /codon_start=1
FT                   /gene="HC-Pro"
FT                   /product="HC-Pro protein"
FT                   /note="helper component proteinase"
FT                   /db_xref="GOA:Q4PLH4"
FT                   /db_xref="InterPro:IPR001456"
FT                   /db_xref="InterPro:IPR031159"
FT                   /db_xref="InterPro:IPR042308"
FT                   /db_xref="UniProtKB/TrEMBL:Q4PLH4"
FT                   /protein_id="AAY79359.1"
FT                   /translation="SQGEEFWAGFNETFVAKRKDPKHTGECRARDTVRQCGEAAGILWQ
FT                   GMFPCFKITCGACQDQIGITADDIVKGELIDNLFEASANLERLRIQPSMSCTLNALATK
FT                   LKPAQDHVQICQQIIQAIGDDNDGPARHLRLATEKFITLQASDAEKCSDISKNLLLVAN
FT                   FVKNRRDGLVRGDVREFKNKISNKAHVNPVLMCDNQLDANGNFVWGERSHHAKRFFDNF
FT                   YTQVNVADDYDAHVLRKHPKGTRRLAIDRLILQLDLKAIQEHVVGFPIERTPITSSCIS
FT                   KKYGAFVFTCSCITLDDKTPLYSDIIMPTKQHLVIGNSGDSKLIDFPETYRDKLWIARD
FT                   GYCYVNIFLAMLVNINEVDAKNFTKTIRDRVIPQLKEWPTMRDLAASLHMLTVLFPDTR
FT                   QAELPRILVDHKNEMMHVVDSYGSSDIGFHILKAGTVSQLLPFMFDSTEGEMKNYQVG"
XX
SQ   Sequence 1371 BP; 422 A; 297 C; 314 G; 338 T; 0 other;
     tcacaggggg aggagttctg ggcgggcttc aacgaaacat ttgttgctaa gaggaaagat        60
     cctaagcaca caggcgaatg tagggctcgc gacactgtga gacaatgcgg ggaagcagct       120
     ggtatccttt ggcaaggaat gtttccgtgc ttcaagataa cgtgtggagc ttgtcaagat       180
     cagatcggaa taacagctga cgacattgtc aaaggtgagc tcatcgacaa tttgtttgaa       240
     gcatcagcaa accttgaacg cttacgaatc caacccagta tgtcatgcac tctcaatgct       300
     ctcgcgacca agctcaaacc agctcaagat catgtgcaaa tttgccagca aattattcag       360
     gcgattggtg atgacaacga tggaccagcg agacatctgc gcttagccac tgaaaaattc       420
     atcactttgc aagcatcaga tgccgagaag tgcagtgata tttcaaagaa ccttctgcta       480
     gttgcgaact ttgttaagaa cagaagagat ggtcttgtgc gcggcgatgt tagagagttc       540
     aagaacaaga tatctaacaa agcacacgtt aaccccgttc tcatgtgtga caatcaacta       600
     gacgccaatg gaaattttgt atggggggaa agaagtcatc atgcaaaacg attcttcgat       660
     aacttctaca cgcaagtcaa cgtagctgat gattacgatg cacacgtttt gaggaaacac       720
     ccgaaaggca ctcgcagatt agcaatcgat cgcttaattc tacaactgga cttgaaagct       780
     attcaagaac atgtggtggg attcccaatt gagcgaacac ctataacttc atcatgcata       840
     agcaagaaat atggcgcctt tgtgttcaca tgtagttgca tcacacttga tgataaaaca       900
     ccactctatt cagatatcat catgcccacg aagcagcatt tggtcatcgg aaactcaggg       960
     gattcgaagc tcatcgactt tcctgagacg taccgagaca aattgtggat tgcaagagat      1020
     ggatattgct acgtcaacat tttcctcgct atgttggtca atattaatga agttgacgct      1080
     aagaatttta ccaagacaat tcgcgatcgt gtgataccac aactaaagga atggccaacc      1140
     atgagagacc tggcagctag cttgcacatg ttgacagtct tatttccaga tacgagacaa      1200
     gctgaactac cacgcatact ggttgatcac aagaatgaaa tgatgcatgt cgttgattca      1260
     tatggctcga gtgatatcgg atttcacata ctcaaagctg gaacggttag tcaactgcta      1320
     ccgttcatgt ttgactccac tgaaggcgaa atgaagaact accaggtcgg c               1371
//