ID   DQ139274; SV 1; linear; genomic RNA; STD; VRL; 1972 BP.
XX
AC   DQ139274;
XX
DT   01-AUG-2006 (Rel. 88, Created)
DT   22-APR-2009 (Rel. 100, Last updated, Version 2)
XX
DE   Bean pod mottle virus type II strain Hopkins polyprotein gene, partial cds.
XX
KW   .
XX
OS   Bean pod mottle virus
OC   Viruses; Riboviria; Picornavirales; Secoviridae; Comovirinae; Comovirus.
XX
RN   [1]
RP   1-1972
RX   DOI; 10.1094/PHYTO-97-0079.
RX   PUBMED; 18942940.
RA   Gu H., Zhang C., Ghabrial S.A.;
RT   "Novel Naturally Occurring Bean pod mottle virus Reassortants with Mixed
RT   Heterologous RNA1 Genomes";
RL   Phytopathology 97(1):79-86(2007).
XX
RN   [2]
RP   1-1972
RA   Zhang C., Ghabrial S.A., Gu H.;
RT   "Characterization of partial diploid reassortants of BPMV";
RL   Unpublished.
XX
RN   [3]
RP   1-1972
RA   Zhang C., Ghabrial S.A., Gu H.;
RT   ;
RL   Submitted (21-JUL-2005) to the INSDC.
RL   Plant Pathology, Univ. of Kentucky, 1405 Veterans Drive, Lexington, KY
RL   40546, USA
XX
DR   MD5; 96c7cc2e76e93b674e0d7cc459da89e5.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1972
FT                   /organism="Bean pod mottle virus"
FT                   /segment="RNA1"
FT                   /strain="Hopkins; K-Ho1"
FT                   /mol_type="genomic RNA"
FT                   /country="USA"
FT                   /note="type: II"
FT                   /db_xref="taxon:12260"
FT   CDS             <1..>1972
FT                   /codon_start=2
FT                   /product="polyprotein"
FT                   /db_xref="InterPro:IPR009003"
FT                   /db_xref="InterPro:IPR014759"
FT                   /db_xref="UniProtKB/TrEMBL:Q0R335"
FT                   /protein_id="ABA18806.1"
FT                   /translation="SLEEKGMHFDSQIMMCSSNFLEPSPEAKIRDDMAFRNRRHVLITV
FT                   ELKPGVEYGESDFTKNQRYLLKTWFHDHYVVDQTFESYADLLAYCFTKWERHVKEQESN
FT                   LSQIKGKKSESGHFNNFQQLMDLAVSWNLSANIMKERIKADKSDMVYVFSAGRKDKIVH
FT                   CFLNKEGECSIRPDSIEDPEAQLLLKASETMLMKAYAFLKYNNATNLIVRTHLAELVNE
FT                   DFYDEKFNFIGTIGTPAFHRQIAAHLEKMPLWQKAILCGMGHCLSRKSKETWYSGMREK
FT                   FVQMMKSIYETEVTDWPVPLKIISGTILATILGTTFWKLFSFLRDAGNGGVFVGNVASA
FT                   FTTSSVLEAQSRKPNRYEVSQYRYRNVPIKRRAWVEGQMSFDQSVVAIMSKCKASMRMG
FT                   NTDAQILMVPGRRFIAHGHFFKNLTQKVRVQIVTSEKSYWHVYDPDKFQMFDNSEIGLY
FT                   SNPTLEDIPHSAWDLFCWDSEKTLPNNFSAELLSCKLDTVTGQYYPEWAPINCRVHRQP
FT                   IHITGGNYVRKQDVSIEYDACTIPNDCGSLVVAKVGNHKQIVGFHVAGSKGRLGYASLI
FT                   PYVEPVVQAQSAEVYFDFFPVEVDSQEGVAHIGELKSGVYVPLPTKTNLVETPKEWQLD
FT                   LPCDKIPSVLTTTDERLVGTEQ"
FT   mat_peptide     <1..1051
FT                   /product="helicase"
FT   mat_peptide     1052..1135
FT                   /product="VPg"
FT   mat_peptide     1136..1759
FT                   /product="proteinase"
XX
SQ   Sequence 1972 BP; 616 A; 332 C; 437 G; 587 T; 0 other;
     aagtttagag gaaaagggaa tgcattttga ttctcagatc atgatgtgct cttcaaattt        60
     tttggaacct tctcctgaag ccaaaattag agatgacatg gcttttagaa atagaagaca       120
     tgttttgata acagttgagc ttaaacctgg agtggagtat ggggagagcg attttaccaa       180
     aaatcagcgg tatttactca aaacttggtt tcatgatcat tatgttgtag accaaacttt       240
     tgaatcttat gctgatcttt tggcatattg cttcactaaa tgggagagac atgtgaagga       300
     acaagagtct aatttgtctc aaattaaagg caagaaaagt gagagtggcc atttcaataa       360
     ttttcaacaa cttatggatt tggcagtttc atggaatctc agtgcaaata tcatgaagga       420
     acgaatcaaa gctgataaaa gtgatatggt ttatgtcttc tctgctggaa ggaaggacaa       480
     aattgtacat tgctttttga acaaagaagg cgaatgtagt atacgtcctg attcaataga       540
     agatccagaa gcacaactct tgctcaaagc ttcagaaact atgctcatga aagcttatgc       600
     ttttttgaag tacaacaatg cgaccaattt gattgtcagg acccatttgg cagaattggt       660
     caatgaagac ttttatgatg aaaagtttaa ttttattggc acaattggga ctccagcttt       720
     tcatcgacaa attgctgcac acttggagaa aatgccatta tggcaaaaag caattttgtg       780
     tggaatggga cattgtttgt ctcggaaaag caaagagaca tggtattctg ggatgaggga       840
     aaaatttgta caaatgatga agagcatcta tgaaacagaa gttacagatt ggccagtacc       900
     actgaaaatc atttctggaa ccattcttgc aacaattttg ggaacaacct tctggaaact       960
     cttttccttt cttagagatg ctggtaatgg gggagttttt gttggtaatg ttgcttcagc      1020
     attcacaact tcaagtgtgc ttgaggccca aagtagaaag cccaacagat atgaagtttc      1080
     ccaatacaga tatcgcaatg tgccaataaa gcgcagagca tgggttgaag gccagatgtc      1140
     tttcgatcag tctgtagtag caattatgtc taaatgcaaa gccagcatga gaatgggaaa      1200
     cactgatgct caaatcttga tggttccagg gcgcagattc atagctcatg gacatttttt      1260
     caaaaatctg actcagaaag tgcgagtcca gattgttaca tctgaaaaga gttactggca      1320
     tgtgtatgat cctgacaagt ttcagatgtt tgacaacagt gaaataggtc tttattctaa      1380
     tcccactttg gaagatatcc cacattcagc ttgggacctt ttttgctggg acagtgagaa      1440
     aactttgcca aataattttt ctgcagaatt gctctcttgc aaattggata ctgttactgg      1500
     ccaatactat cctgagtggg ctccaattaa ttgtcgagtt catcgacaac caattcacat      1560
     cactggagga aattatgtca gaaagcaaga tgtcagtatt gaatatgatg catgtacaat      1620
     tccaaatgat tgtggttcat tggttgttgc caaggttgga aatcacaaac aaattgttgg      1680
     tttccatgtt gctggaagca aaggaagact gggatatgct tcattgatac catatgttga      1740
     gccagtcgtg caagctcaaa gtgctgaagt ttactttgat ttcttccccg tggaggttga      1800
     cagtcaagag ggagttgctc acattggtga attgaaatct ggtgtctatg ttccactgcc      1860
     tacaaaaact aatttggtgg aaactcccaa ggaatggcaa ctggatctac cttgtgataa      1920
     aattcctagt gtcttgacta caactgatga gagattggtg ggcacagaac aa              1972
//