ID DQ398945; SV 1; linear; genomic RNA; STD; VRL; 2961 BP. XX AC DQ398945; XX DT 11-MAR-2006 (Rel. 87, Created) DT 05-AUG-2023 (Rel. 144, Last updated, Version 2) XX DE Tomato spotted wilt virus isolate p202 truncated putative silencing DE suppressor and nucleocapsid genes, complete cds. XX KW . XX OS Orthotospovirus tomatomaculae OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Tospoviridae; Orthotospovirus. XX RN [1] RP 1-2961 RA Margaria P., Ciuffo M., Turina M.; RT "Molecular characterization of resistance-breaking strains of tomato RT spotted wilt virus (Tospovirus, Bunyaviridae) infecting resistant pepper RT carrying the tsw gene"; RL Unpublished. XX RN [2] RP 1-2961 RA Margaria P., Ciuffo M., Turina M.; RT ; RL Submitted (10-FEB-2006) to the INSDC. RL IVV, CNR, Strada delle Cacce 73, Torino, TO 10135, Italy XX DR MD5; a57e21e3cb27d26cfef2187a4d50f21e. DR EuropePMC; PMC6305171; 30588225. XX FH Key Location/Qualifiers FH FT source 1..2961 FT /organism="Orthotospovirus tomatomaculae" FT /host="pepper" FT /isolate="p202" FT /mol_type="genomic RNA" FT /country="Italy: Sicily" FT /isolation_source="open field" FT /note="resistance breaking strain" FT /db_xref="taxon:3052585" FT CDS 89..1288 FT /codon_start=1 FT /product="truncated putative silencing suppressor" FT /note="NSs" FT /db_xref="InterPro:IPR004915" FT /db_xref="UniProtKB/TrEMBL:Q20AM7" FT /protein_id="ABD63900.1" FT /translation="MSSSVYESIIQTRASVWGSTASGKAVVDSYWIHELGTGSPLVQTQ FT LYSDSRSKSSFGYTAKVGNLPCEEEEILSQHVYIPIFDDIDFSINIDDSVLALSVCSNT FT VNTNGVKHQGHLKVLSPAQLHSIGSTMNRSDITDRFQLQEKDIIPNDRYIEAANKGSLS FT CVKEHTYKIEMCYNQALGKVNVLSPNRNVHEWLYSFKPSFNQVESNNRTVNSLAVKSLL FT MSAENNIMPNSQAFVKASTDSHFKLSLWLRVPKVLKQVSIQKLFKVAGDETNKIFYLSI FT ACIPNHNSVETALNISVICKHQLPIRKCKAPFELSMMFSDLKEPYNIVHDPSYPQRIVH FT ALLETHTSFAQVLCNNLQEDVIIYTLNNYELTPGKLDLGERTLNYSEDICKEIFPFKNT" FT CDS complement(2034..2810) FT /codon_start=1 FT /product="nucleocapsid" FT /note="N" FT /db_xref="GOA:Q88910" FT /db_xref="InterPro:IPR002517" FT /db_xref="UniProtKB/TrEMBL:Q88910" FT /protein_id="ABD63901.1" FT /translation="MSKVKLTKESIVALLTQGKDLEFEEDQNLVAFNFKTFCLENLDQI FT KKMSVISCLTFLKNRQSIMKVIKQSDFTFGKITIKKTSDRIGATDMTFRRLDSLIRVRL FT VEETGNSENLNTIKSKIASHPLIQAYGLPLDDAKSVRLAIMLGGSLPLIASVDSFEMIS FT VVLAIYQDAKYKDLGIDPKKYDTREALGKVCTVLKSKAFEMNEDQVKKGKEYAAILSSS FT NPNAKGSIAMEHYSETLNKFYEMFGVKKQAKLAELA" XX SQ Sequence 2961 BP; 934 A; 546 C; 476 G; 1004 T; 1 other; agagcaattg tgtcataatt ttattcttaa tcaaacctca cttagaaaat cacaatactg 60 taataagaac acagtaccaa taaccataat gtcttcaagt gtttatgagt cgatcattca 120 gacaagagct tcagtctggg gatcaactgc atctggtaaa gctgttgtag attcttactg 180 gattcatgaa cttggcactg gttctccact agttcaaacc cagctgtatt ctgattcaag 240 aagcaaaagt agctttggct atactgcaaa ggtagggaat cttccctgtg aagaagaaga 300 gattctttct cagcatgtgt atatccctat ttttgatgat attgatttta gcattaatat 360 tgatgactct gttctggcac tatctgtttg ctcaaataca gtcaatacta atggagtgaa 420 acatcaaggt catttgaaag ttttgtctcc tgctcagctc cactctattg gatctaccat 480 gaacagatct gatattacag accgattcca gcttcaagaa aaagacataa ttcccaatga 540 cagatacatc gaagctgcaa acaaaggctc tttgtcttgt gtcaaagagc atacctataa 600 gatcgagatg tgctataatc aagctttggg caaagtgaat gttttatccc ctaacaggaa 660 tgttcatgaa tggctgtaca gtttcaagcc aagtttcaat caagttgaaa gcaacaacag 720 aactgtaaat tctcttgcag tgaaatctct gctcatgtca gcagaaaaca acatcatgcc 780 taactctcag gcttttgtca aagcttccac tgattctcat ttcaaactga gcctctggct 840 aagggtccca aaggttctga agcaggtctc tattcagaaa ttgttcaaag ttgcaggaga 900 cgaaacaaat aaaatatttt atttatctat tgcttgcatt ccaaaccata acagtgttga 960 gacagcttta aacatttctg ttatttgcaa gcatcagctc ccaattcgta aatgtaaagc 1020 tccttttgaa ttatcaatga tgttttctga tttaaaggag ccttacaaca ttgttcatga 1080 tccttcatat cctcagagga ttgttcatgc tctgcttgaa actcacacat cttttgcaca 1140 agttctttgc aacaacttac aagaagatgt gatcatctac actttgaaca actatgagct 1200 aactcctgga aagttagatt taggtgaaag aaccttaaat tacagtgaag atatctgcaa 1260 ggaaatattt cctttcaaaa acacttgaat gtcttccatc taacacacaa actatgtctt 1320 acttggacag catccaaatc ccttcctgga agatagactt tgccagggga gaaattaaga 1380 tttccccaca acctgtttca gttgcaaaat ctttgttaaa gcttgattta agcgggatcg 1440 aaaagaaaga atctaagatt ccggaaacat atgcttcagg atcaaaataa tcttgctgtg 1500 tccggttttt ctaattatgt tatgtttatt ttctttcttt acttataatt atttctctgt 1560 tttgtcattt cttttaagtt cctcctgttt aatagaaacc ataaaacaaa aaataaaata 1620 aaaataaaat taaaaatgaa acaaaaatca aaaatgaaac aaaaataaaa aataaaaaat 1680 gaaataaaaa caacaaaaaa attaaaaaac aaaaacccaa aaaagatccc gaatgggaca 1740 atcttggcca aatttgggtt ttgttttgtt tttgtttttt gttttttgtt tttattttta 1800 ttttatttat ttattttatt ttatttttgt tttttatttt ttattttgtt ttttatttta 1860 tgttttttct tgtttttgtt attttgttta tttattaagc ataacacaca gaaagcaaac 1920 tttaattaaa cacacttatt ttaaatttaa cacactaagc aagcacaagc aataaagata 1980 aagaaagctt tatatatttg tagacttttc cataatttaa cttacagctg atttyaagca 2040 agttctgcga gttttgcctg ttttttaacc ccgaacattt catagaactt gttaagagtt 2100 tcactgtaat gttccatagc aatacttcct ttagcattag gattgctgga gctgagtata 2160 gcagcatact cttttccttt cttcacctga tcttcattca tttcaaatgc tttgcttttc 2220 agcacagtgc aaacttttcc taaggcttct ctggtgtcat acttctttgg gtcaatcccg 2280 aggtctttgt attttgcatc ctgatatata gccaagacaa cactgatcat ctcaaagcta 2340 tcaactgaag caataagagg taagctacct cccagcatta tggcaagcct cacagacttt 2400 gcatcatcaa gaggtaatcc ataggcttga atcaaagggt gggaagcaat cttagatttg 2460 atagtattga gattctcaga attcccagtt tcctctacaa gcctgaccct gatcaagcta 2520 tcaagccttc tgaaggtcat gtcagtggct ccaatcctgt ctgaagtttt ctttatggta 2580 attttaccaa aagtaaaatc actttgttta ataaccttca ttatactctg acgattcttc 2640 aggaatgtca gacatgaaat aacgctcatc ttcttgatct ggtcgaggtt ttccagacaa 2700 aaagtcttga agttgaatgc taccagattc tgatcttcct caaactcaag gtctttgcct 2760 tgtgtcaaca aagcaacaat gctttcctta gtgagcttaa ccttagacat gatgattgta 2820 gaagttgtta tatgctttga ccgtatgtaa ttcaaggtgc gaaagtgcaa ctctgtattc 2880 cgcagtcgtt tcttagggtt ttaatgtgat gatttgtaag actgagtgtt aaggtttgaa 2940 taaaattgac acaattgctc t 2961 //