ID DQ885456; SV 1; circular; genomic DNA; STD; VRL; 2635 BP. XX AC DQ885456; XX DT 14-SEP-2006 (Rel. 89, Created) DT 14-SEP-2006 (Rel. 89, Last updated, Version 1) XX DE Chino del tomate virus-[RK] variant segment A, complete sequence. XX KW . XX OS Chino del tomate virus-[RK] OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2635 RA Khoury R., Liewienski A., Stiney A., Thomas J.C.; RT ; RL Submitted (03-AUG-2006) to the INSDC. RL Natural Sciences, University of Michigan-Dearborn, 4901 Evergreen Rd, RL Dearborn, MI 48128-1491, USA XX DR MD5; ff334c80b35a34c7e5895bf23a0f63e8. XX FH Key Location/Qualifiers FH FT source 1..2635 FT /organism="Chino del tomate virus-[RK]" FT /segment="A" FT /isolate="RK variant" FT /mol_type="genomic DNA" FT /country="Mexico" FT /note="replication competent in tobacco and tomato" FT /db_xref="taxon:401685" FT gene 219..974 FT /gene="AV1" FT CDS 219..974 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /note="capsid protein" FT /db_xref="GOA:Q09KA7" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q09KA7" FT /protein_id="ABI50490.1" FT /translation="MPKRDLPWRSIAGTSKVSRNANYSPRGGSGPRLNKAAEWVNRPMY FT RKPRIYRTLRTPDVPRGCEGPCKVQSYEQRHDISHTGKVMCISDVTRGNGITHRVGKRF FT CVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATV FT KNDLRDRFQVMHKFYGKVTGGQYASNEQAIVKRFWKVNNHVVYNHQEAGKYENHTENAL FT LLYMACTHASNPVYATLKIRIYFYDSIMN" FT gene complement(971..1369) FT /gene="AC3" FT CDS complement(971..1369) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer protein" FT /db_xref="GOA:Q09KA6" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q09KA6" FT /protein_id="ABI50491.1" FT /translation="MDSRTGEFITVPQAENGVYIWEIENPLYFKMYRVEDLLYTRTRVY FT HVQIRFNHNLRRALHLHKAYLNFQVWTTSMTASGSTYLARFRHLVIMYLDQLGVISINN FT VIRAVHFATDRSYVNYVLENHSIKFKLY" FT gene complement(1116..1505) FT /gene="AC2" FT CDS complement(1116..1505) FT /codon_start=1 FT /gene="AC2" FT /product="transcriptional activator protein" FT /note="TrAP" FT /db_xref="GOA:Q09KA5" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q09KA5" FT /protein_id="ABI50492.1" FT /translation="MRSSSPSHPPSIKTAHRQAKKRAIRRRRIDLRCGCSIYFHIGCTG FT HGFTHRGIHHCTSGGEWRVYLGDRKSPLFQDVQSGGSTVYENQGLPRSDTVQPQPEESV FT ASPQSLPELPSLDDIDDSFWVDLFS" FT gene complement(1417..2502) FT /gene="AC1" FT CDS complement(1417..2502) FT /codon_start=1 FT /gene="AC1" FT /product="replication initiator protein" FT /note="replicase; Rep" FT /db_xref="GOA:Q09KA4" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q09KA4" FT /protein_id="ABI50493.1" FT /translation="MPSVKRFKVSAKNYFLTYPQCSLSKEEALSQLQTLKTPVNKKYIK FT ICRELHENGEPHLHVLIQFEGKYQCTNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYI FT DKDGDTVEWGEFQIDGRSARGGQQSANDSYAKALNAGSVQAAMTVLKEEQPKDFVLHNH FT NIRSNLERIFAKAPERWVPPFQLSSFTNVPDEMQEWADDYFRRSSAARPERHISIIVEG FT DSRTGKTMWARALGPHNYLSGHLDFNPKVYSNEVEYNVIDDVAPHYLKLKHWKELLGAQ FT KDWQSNCKYGKPVQIKGGIPAIVLCNPGEGASYKDFLNKEENASLRNWTIKNAIFITLT FT SALYQDSAQASQEEGHQEEAD" FT gene complement(2088..2351) FT /gene="AC4" FT CDS complement(2088..2351) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:Q09KA3" FT /protein_id="ABI50494.1" FT /translation="MRMGNRISTFSYNSKGSTSARITDSSIWSPQPGQHISIRTYRELN FT PAPTSSPTSTRTEIQLSGENSRSTADQPEEVSNLLTIRMQRR" XX SQ Sequence 2635 BP; 645 A; 604 C; 630 G; 756 T; 0 other; accggatggc cgcgcgattt tttccccctt tgtacgtgga cggtcgcgat tgtctctttt 60 cgcccgcacc ctcctcttta atttgaatta aagctttccg ctttcgtctc gtccaatcat 120 gtcacgtttg acgagattag atattttgaa ctacttgggc tcgaagtagt tatcgttata 180 aattaaagag gcttttggcc caatgaattc aattcaaaat gcctaagcgc gatctaccat 240 ggcgctcgat cgcgggaact tcgaaggtga gccgcaatgc caattattcc cctcgtggtg 300 gaagtgggcc tagacttaac aaggccgctg aatgggttaa caggcccatg tacaggaagc 360 ccaggatcta ccggacgctg agaacgcccg acgttccaag aggctgtgaa ggcccgtgta 420 aggtccagtc ctatgaacag cgccacgata tttcacatac aggtaaggtt atgtgcatat 480 ccgacgtgac acgtggtaat ggtatcaccc accgtgtggg taagcgtttc tgtgttaagt 540 ctgtgtacat tctcggtaag atctggatgg atgagaacat caagctgaag aaccacacga 600 atagtgttat gttctggttg gtcagggacc gtagaccgta tggcactccc atggatttcg 660 gtcaagtgtt caacatgttt gacaacgagc ccagtactgc tacggtgaag aacgatcttc 720 gcgatcgatt ccaggtcatg cacaaattct atgggaaggt gacaggtgga cagtatgcca 780 gcaacgagca ggcgatagtc aagcgcttct ggaaggtcaa caatcatgtg gtctacaatc 840 atcaagaggc tggcaagtac gagaatcata cggagaacgc tttgttattg tacatggcat 900 gtacgcatgc ctctaaccct gtatatgcaa cgcttaagat ccggatctat ttctatgatt 960 cgatcatgaa ttaataaagt ttgaatttta ttgaatgatt ttccagtaca taattaacat 1020 acgatctgtc tgttgcgaaa tgaacagctc taattacatt gttaatggaa ataacgccta 1080 actggtctaa atacataata actaaatgtc taaacctagc taaataggtc gacccagaag 1140 ctgtcatcga tgtcgtccag acttggaagt tcaggtaggc tttgtggaga tgcaacgctc 1200 tcctcaggtt gtggttgaac cgtatctgaa cgtggtaaac cctggttctc gtatacagta 1260 gatcctccac tctgtacatc ttgaaataga ggggattttc tatctcccag atatacacgc 1320 cattctccgc ctgaggtaca gtgatgaatt cccctgtgcg tgaatccatg ccccgtgcag 1380 cctatatgga agtagatgga gcacccgcag cgtaaatcaa tccgcctcct cctgatggcc 1440 ctcttcttgg cttgcctgtg cgctgtcttg atagagggcg gatgtgaggg tgatgaagat 1500 cgcattcttg atggtccaat ttctcagtga tgcgttttcc tctttgttga ggaaatcttt 1560 atagctggca ccctcaccag gattgcaaag cacgattgct gggatacctc ctttaatttg 1620 aactggcttg ccgtacttgc aattggactg ccagtccttc tgggccccca gaagttcttt 1680 ccagtgcttt agctttagat agtgcggtgc gacgtcatca atgacgttat actccacttc 1740 gttcgagtag acctttgggt tgaagtccag atgtccacta aggtaattat gtgggcctaa 1800 tgccctagcc cacatcgtct tccctgtcct cgaatcacct tccacgatga tactaatatg 1860 tctctccggc cgcgcagcgg aactcctcct aaaataatca tccgcccact cttgcatctc 1920 gtccggaacg ttagtgaaag aggagagttg aaacggagga acccaccgtt ccggagcctt 1980 agcgaatatt ctctctaagt tggagcggat gttatgatta tgcaggacaa aatcttttgg 2040 ctgctcttcc ttcaaaaccg tcatggcagc ttgaacagat cctgcattca acgcctttgc 2100 atacgaatcg ttagcagatt gctgacctcc tctggctgat ctgccgtcga tctggaattc 2160 tccccactca actgtatctc cgtccttgtc gatgtaggac ttgacgtcgg agctggattt 2220 agctccctgt atgttcggat ggaaatgtgc tgaccgggtt ggggagacca gatcgaagaa 2280 tctgttattc gtgcactggt acttcccttc gaattgtatg agaacgtgga gatgcggttc 2340 cccattctca tgtaactctc tgcagatctt gatgtatttc ttgttaactg gcgtttttag 2400 ggtttgtaat tgggaaagtg cttcttcttt gctaagagag cactggggat atgtgagaaa 2460 atagtttttg gctgagactt tgaaacgttt aaccgatggc atttttgtaa taagaggggt 2520 gtactccgat tgagctctca aacttctgtg ctatgttttg gggtaaaggg gacaatatat 2580 actagaactc ttagtagcac tttagcgaca cgtggcggcc atccgatata atatt 2635 //