ID DQ925458; SV 1; linear; genomic RNA; STD; VRL; 1589 BP. XX AC DQ925458; XX DT 30-JUN-2007 (Rel. 92, Created) DT 06-MAR-2008 (Rel. 95, Last updated, Version 2) XX DE Shallot yellow stripe virus isolate SYSV-VN/L1 polyprotein gene, partial DE cds. XX KW . XX OS Shallot yellow stripe virus OC Viruses; Riboviria; Potyviridae; Potyvirus. XX RN [1] RP 1-1589 RX DOI; 10.1007/s00705-007-1067-1. RX PUBMED; 17906829. RA Ha C., Revill P., Harding R.M., Vu M., Dale J.L.; RT "Identification and sequence analysis of potyviruses infecting crops in RT Vietnam"; RL Arch. Virol. 153(1):45-60(2008). XX RN [2] RP 1-1589 RA Ha C.V., Coombs S., Revill P.A., Harding R.M., Vu M.T., Dale J.L.; RT ; RL Submitted (29-AUG-2006) to the INSDC. RL Institute of Health and Biomedical Innovation, Queensland University of RL Technology, 2 George Street, Brisbane, Queensland 4001, Australia XX DR MD5; 5258cfd5adc12be1577993b0dba62c86. XX FH Key Location/Qualifiers FH FT source 1..1589 FT /organism="Shallot yellow stripe virus" FT /host="Leek (Allium porrum)" FT /isolate="SYSV-VN/L1" FT /mol_type="genomic RNA" FT /country="Viet Nam:Bacninh" FT /isolation_source="infected plant" FT /collection_date="2004" FT /note="sample 1226" FT /db_xref="taxon:62059" FT CDS <1..1393 FT /codon_start=2 FT /product="polyprotein" FT /db_xref="GOA:A6XP60" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001592" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:A6XP60" FT /protein_id="ABL09433.1" FT /translation="STVVDNTLMAMLGVQYTLLKNDVKFMEQDSIIRYFCNGDDLLLAI FT HPDYIHILDSFTKHFADLGLEYDFSNRTTNREELYFMSHRGILRGEVYIPKLDKERVVS FT ILEWDRAKEPEHRLEAICAAMVEAWGYDELLHEIRLFYQWVLEQAPYNLIAQTGKAPYI FT AETALKRLYMDEQATESELERYSRLYQILDEQTPAPSYVSYQASELEDAASVNTDKQVG FT KSKDKDKDVDVGTSGEFSVPKVKMLSDKMRLPRVGKKVILNGKHLLTYKPDQVDLYNTR FT ATHAQFKTWYDAVKLEYELTDEQMKIVMNGLMVWCIENGTSQNLTGVWTMMDGDNQMEY FT PLSPIIDNAKPTFRQIMAHFSDAAEAYIEYRNATEKYMPRYGLQRNLREYSLARYAFDF FT YEMNSKTPIRAKEAHMQMKAAAVRGVANRMFGLDGNISTDDENTERHTAADVNKDHHTL FT LGLRM" FT mat_peptide <1..616 FT /product="NIb" FT mat_peptide 617..1390 FT /product="CP" FT 3'UTR 1394..1589 XX SQ Sequence 1589 BP; 523 A; 288 C; 363 G; 415 T; 0 other; ttccacagtg gtggataaca cattgatggc tatgcttggt gtccaataca cgttattaaa 60 gaacgatgtc aaattcatgg aacaagactc tattattcga tatttttgca atggtgatga 120 tttactcctc gctatccatc cggattatat tcatatattg gactcattta caaagcactt 180 tgccgatttg ggccttgaat acgatttttc aaaccgaacc acaaatcgag aggaattgta 240 tttcatgtct catagaggca tacttagagg cgaagtttat atacctaaac tcgacaaaga 300 acgtgtagtt tccatacttg aatgggacag agccaaagag cccgagcatc gattggaagc 360 catctgtgcc gccatggtag aggcatgggg ctacgacgaa ctactacatg aaatcagact 420 gttttatcag tgggtgttgg agcaagcacc gtataattta atagctcaaa caggaaaagc 480 accatatatt gcagagacgg cattaaagag attgtacatg gacgagcaag caaccgaaag 540 tgaattagag agatatagtc gactttacca aattttggat gagcaaacac cagcaccaag 600 ctatgtttct taccaagcat ctgagttaga agacgctgca agcgtaaaca ctgataagca 660 agttggaaag agtaaagaca aagataaaga tgttgatgtt ggcacatcag gcgagttctc 720 tgtaccaaaa gtaaaaatgt tatcagataa gatgcgttta ccacgagttg ggaagaaggt 780 gatacttaat gggaaacatt tgttgactta taagcctgat caagttgatc tatacaacac 840 acgggcaaca catgcacaat ttaaaacgtg gtacgatgca gtcaaacttg aatacgaatt 900 gacggacgaa caaatgaaaa tagttatgaa cggtttgatg gtgtggtgca tcgagaatgg 960 cacatcacaa aatttaacgg gggtctggac gatgatggac ggtgataacc aaatggagta 1020 tccacttagc ccgattattg ataatgcgaa acccacattt agacaaataa tggcacactt 1080 cagtgacgca gctgaagcgt acattgaata taggaatgcc acagaaaaat acatgccccg 1140 gtatggactt cagcgaaatt taagagaata cagcttagca cgttacgcat tcgactttta 1200 tgagatgaac tcaaagacgc cgatccgcgc gaaggaagct catatgcaga tgaaagcggc 1260 agcggttaga ggggtagcta accgcatgtt tggcttggat ggtaacataa gcaccgatga 1320 tgagaacaca gaacgacata cagcagctga tgtgaataag gatcatcaca cgttgctcgg 1380 tcttcgtatg taataagcat atgtatattt aatatatagt gtcgtgcatt atctttcgtt 1440 atatttgaat atgagcaaac atagtgtggt tgtaccaccg tttgtggcat agtatatgat 1500 ataacttcgc tagcattatt tgcaccatgg aatctagtgt ggtttcacca cgaagaaagg 1560 ttacgtgttg tacattttac tagggagac 1589 //