ID   DQ988089; SV 1; linear; genomic RNA; STD; VRL; 1365 BP.
XX
AC   DQ988089;
XX
DT   10-JAN-2007 (Rel. 90, Created)
DT   15-JUN-2007 (Rel. 92, Last updated, Version 3)
XX
DE   Cereal yellow dwarf virus - RPV isolate RPV01F6b03 replicase and coat
DE   protein genes, partial cds; and 17k protein gene, complete cds.
XX
KW   .
XX
OS   Cereal yellow dwarf virus RPV
OC   Viruses; Riboviria; Luteoviridae; Polerovirus.
XX
RN   [1]
RP   1-1365
RX   DOI; 10.1007/s00705-006-0913-x.
RX   PUBMED; 17216137.
RA   Robertson N.L., French R.;
RT   "Genetic structure in natural populations of barley/cereal yellow dwarf
RT   virus isolates from Alaska";
RL   Arch. Virol. 152(5):891-902(2007).
XX
RN   [2]
RP   1-1365
RA   Robertson N.L., French R.;
RT   ;
RL   Submitted (07-SEP-2006) to the INSDC.
RL   Subarctic Agricultural Research Unit, Arctic Plant Germplasm, United States
RL   Department of Agriculture, Agricultural Research Service, 533 E. Fireweed
RL   Avenue, Palmer, AK 99645, USA
XX
DR   MD5; b0b4577fbe37f6f10d33eb2994f3f0cd.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1365
FT                   /organism="Cereal yellow dwarf virus RPV"
FT                   /host="Hordeum vulagre L. (barley)"
FT                   /isolate="RPV01F6b03"
FT                   /mol_type="genomic RNA"
FT                   /country="USA"
FT                   /collection_date="2003"
FT                   /db_xref="taxon:2170100"
FT   CDS             <1..576
FT                   /codon_start=1
FT                   /product="replicase"
FT                   /note="ORF2"
FT                   /db_xref="GOA:A1YH05"
FT                   /db_xref="InterPro:IPR001795"
FT                   /db_xref="UniProtKB/TrEMBL:A1YH05"
FT                   /protein_id="ABL67550.1"
FT                   /translation="SVSDWMLADDMEVRNRLTIDCNELTRHLRAVWLQGISNSVLCLSD
FT                   GTMLAQRVPGAQKSGSYNTSSTNSRVRVMAAYHCGASWAIAMGDDALEAPDTDLSKYKD
FT                   LGFKVEVSGELEFCSHIFKTPNLAIPVNENKMLYRLIHGYNPECGNFEVVQNYLNAAVS
FT                   VLHELRHDRELCLKLQEWLISDVTTKLN"
FT   CDS             762..>1365
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /note="ORF3"
FT                   /db_xref="GOA:A1YH06"
FT                   /db_xref="InterPro:IPR001517"
FT                   /db_xref="UniProtKB/TrEMBL:A1YH06"
FT                   /protein_id="ABL67548.1"
FT                   /translation="MSTVVLRSNGNGSRRRRQRVARRRPAARTQPVVVVTNGPARRGRR
FT                   RRPVGLRRGRTPRSGGGSRGETFVFSKDSLAGNSSGSITFGPSLSEYPAFQNGVLKAYH
FT                   EYKITNCVLQFVSEASSTAAGSISYELDPHCKASSLASTINKFTITKTGARSFPAKMIN
FT                   GLEWHPSDEDQFRILYKGNGASSVAGSFKITLRVQLQN"
FT   CDS             787..1245
FT                   /codon_start=1
FT                   /product="17k protein"
FT                   /note="ORF4"
FT                   /db_xref="InterPro:IPR001964"
FT                   /db_xref="UniProtKB/TrEMBL:A1YH07"
FT                   /protein_id="ABL67549.1"
FT                   /translation="MAMVRADADRESLGEGLLQERSQWLWSPTAQPGAEDADDQLVFGE
FT                   EELQDLEEEAVARHSFSQRIHSRATPLEVSPSGRLYQSIRHSRMEYSRPTMNIRSQIVS
FT                   YSSSARPLPQQPAPSLMSWTPIAKHLHSHQRSISSQSPKLVRGASQRR"
XX
SQ   Sequence 1365 BP; 356 A; 345 C; 329 G; 335 T; 0 other;
     tcagtctccg attggatgct cgcggatgac atggaggtga gaaatcgcct aacaatcgac        60
     tgcaacgagc tcaccagaca ccttagggct gtttggcttc aaggcatatc aaactcggtt       120
     ttatgcctgt cggatggaac catgttagct caacgagtac ccggcgcgca gaaaagtggc       180
     tcgtacaaca cttcgtccac aaactcacgc gtccgagtca tggctgccta tcactgtggc       240
     gcctcgtggg ctatcgctat gggtgatgat gccctggaag ctccagatac agacttgtca       300
     aaatataaag atctgggctt caaagtcgag gttagcggag agttggaatt ctgttcgcac       360
     attttcaaga cccctaacct cgccattccg gttaatgaaa acaaaatgtt gtaccgcttg       420
     atccacgggt acaatccgga atgtggcaat tttgaggtgg ttcaaaacta tctcaatgca       480
     gctgtctcag tgctgcatga gctccgacat gatcgggagc tttgcctgaa acttcaagag       540
     tggttgattt ctgacgtcac cacaaaacta aactgagcac aaaactagcc ggacaaacgt       600
     aagttgcaag tgccggaagt caagtcttac acataagccc aacattgatt ttcatttgtt       660
     agcgggattt gcccttggat ttatatcctc aatccccatt tcagttgttg gtgtttatct       720
     agtctacctt aaggtttcga cccacattcg tgaaattgtt aatgagtacg gtcgtcctta       780
     gatccaatgg caatggttcg cgcagacgca gacagagagt cgctcggcga aggcctgctg       840
     caagaacgca gccagtggtt gtggtcacca acggcccagc caggcgcgga agacgccgac       900
     gaccagttgg tcttcggcga ggaagaactc caagatctgg aggaggaagc cgtggcgaga       960
     cattcgtttt ctcaaaggat tcactcgcgg gcaactcctc tggaagtatc accttcgggc      1020
     cgtctctatc agagtatccg gcattccaga atggagtact caaggcctac catgaatata      1080
     agatcacaaa ttgtgtctta cagttcgtca gcgaggcctc ttccacagca gccggctcca      1140
     tctcttatga gttggacccc cattgcaaag catcttcact cgcatcaacg atcaataagt      1200
     tcacaatcac caaaactggt gcgaggagct tcccagcgaa gatgattaac gggttagagt      1260
     ggcacccttc agacgaagat caattccgta tcctctataa agggaacggt gcctcttccg      1320
     tagctggttc tttcaagatt acacttcgtg tacagctaca aaacc                      1365
//