ID EF155980; SV 1; linear; genomic RNA; STD; VRL; 4333 BP. XX AC EF155980; XX DT 05-OCT-2010 (Rel. 106, Created) DT 19-NOV-2010 (Rel. 106, Last updated, Version 2) XX DE Sweet potato feathery mottle virus isolate 41KAP polyprotein gene, partial DE cds. XX KW . XX OS Sweet potato feathery mottle virus OC Viruses; Riboviria; Potyviridae; Potyvirus. XX RN [1] RP 1-4333 RX DOI; 10.1111/j.1365-294X.2010.04682.x. RX PUBMED; 20609081. RA Tugume A.K., Cuellar W.J., Mukasa S.B., Valkonen J.P.; RT "Molecular genetic analysis of virus isolates from wild and cultivated RT plants demonstrates that East Africa is a hotspot for the evolution and RT diversification of sweet potato feathery mottle virus"; RL Mol. Ecol. 19(15):3139-3156(2010). XX RN [2] RP 1-4333 RA Tugume A.K., Cuellar W.J., Mukasa S.B., Valkonen J.P.T.; RT ; RL Submitted (30-NOV-2006) to the INSDC. RL Department of Applied Biology, University of Helsinki, P.O. Box 27 RL (Latokartanonkaari 7), Helsinki FIN-00014, Finland XX DR MD5; 756706dd0ecf1ab993d02eabcea3aeea. XX FH Key Location/Qualifiers FH FT source 1..4333 FT /organism="Sweet potato feathery mottle virus" FT /host="Ipomoea spathulata" FT /isolate="41KAP" FT /mol_type="genomic RNA" FT /country="Uganda:Kapchorwa" FT /isolation_source="leaf" FT /db_xref="taxon:12844" FT CDS <1..4110 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="GOA:E1U273" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001592" FT /db_xref="InterPro:IPR001730" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR013648" FT /db_xref="UniProtKB/TrEMBL:E1U273" FT /protein_id="ABO92942.1" FT /translation="IAVLSSARAQLLEFENLSMDASYNEMSKGILETYVRENGATTCVL FT HQTKSDLAKHLQLKGIWNKSVITQDLLVLAGVFVGGIWMVFSGAKESFEQTVKHQGKEK FT RQRQKLKFRQARDRKLGFEVYADDGTIEHYFGSAYTAKGKQKGKVTGMGAKNRKFINMY FT GFDPTEYSFVRFVDPLTGLVFDDSPYTDIQLVQEKIGDARHKAILEDKLSRERISYNPG FT ISAYYINEITNAALKVDLTPHNPLLACERHNTIAGHPDHEGELRQTGSVVKIDIRDVPE FT NPEEASLVGHESKSLFRGLRDYNPIASVICHLVNEADGRTSDSYGIGYGGLIITNRHLF FT KRNNGTLTIRSRHGEFVIKNTTQLGMKPCADRDILIIKMPKDIPPFPQRLQFRVPKENE FT RICLVGSNFQDKSITSTVSETSVTCHVPNSHFWKHWIDTKDGHCGLPLVSTVDGAILGV FT HSLSNLTNTQNFFAAVPANFEIDYLKTPEATEWIKKWSYNPSEICWGTLELKTGQPVAP FT FKVTKLITDLDSMQVYAQARSDKWVLDRLYGNLKAVGQCPAQLVTKHVVKGKCMLFDLY FT LQQDHDVRNFFKPLMGAYGKSRLNKEAYNKDLFKYATPINAGDVCHKTFEQAELAVVEM FT LKANGFHKCNYITDPEEIVKALNMKAAVGAMYSGKKKDYFDGMSDEDIENLLFHSCKRL FT YMGQKGLWNGSLKAELRPMAKVELNKTRTFTAAPLDTLLGGKTCVDDFNNMFYNNHLKC FT PWTVGITKFYQGWDRLLTSLPENWIYCDADGSQFDSSLSPYLINAVLNIRREFMEEWDI FT GDQMLRNLYTEIVYTPILTPDGTIVKKFKGNNSGQPSTVVDNTLMVVLAVYYTLLKLGV FT SEFEISERCVFFANGDDLLIAMRPDTAHLLDSFGECFAELGLNYDFSSRTTKKEELWFM FT SHCGIKRDGMYIPKLEPERIVSILEWDRSHEPVHRLEAICAAMVEAWGYDELLHQIRKF FT YAWVLGQAPYSELARTGKAPYIAETALKSLYTGVQPSADDLSEYTRVLNEMYDDSLLQD FT NDLSVYHQSGNPPEFKDAGANPPAPKPKGPFTAPEITEVTEPEDPKQAALREARQKQPA FT VTPESYGRDTGEKSMRSVSPQRVKDKDVNVGTTGTFLVPRVKLHTSKMRQPRVNGISVV FT NLQHLATYEPEQHNIGNTRSTQEQFQAWYEGVKGDYGVDDAGMSILLNGLMVWCIENGT FT SPNINGVWTMMDGDEQVTYPIKPLLDHAVPTFRQIMTHFSDVAEAYIEMRNRTKAYMPR FT YGLQRNLTDMSLARYAFDFYELHSTTPTRAKEAHMQMKAAALKNAHNRLFGLDGNVSTQ FT EEDTERHTATDVTRNIHNLLGMRGVH" FT mat_peptide <1..141 FT /product="cytoplasmic inclusion protein" FT /note="CI" FT mat_peptide 142..300 FT /product="6K2 protein" FT mat_peptide 301..876 FT /product="VPg protein" FT mat_peptide 877..1605 FT /product="NIa-Pro protein" FT mat_peptide 1606..3168 FT /product="nuclear inclusion body protein" FT /note="NIb" FT mat_peptide 3169..4107 FT /product="coat protein" FT /note="CP" FT 3'UTR 4111..4333 XX SQ Sequence 4333 BP; 1364 A; 822 C; 1025 G; 1122 T; 0 other; atagctgtac tatcatcagc cagagcgcaa ctcctcgaat ttgaaaattt gagtatggat 60 gcctcatata acgaaatgag caaaggaatc cttgaaacgt atgtgcgtga gaacggtgct 120 accacttgtg tattacacca aacaaaaagt gatcttgcga agcatctaca gcttaagggc 180 atttggaata aatccgtgat aacacaagat ctcctggtac tagcaggagt ttttgttggt 240 ggtatatgga tggtgttttc gggtgcaaag gaatcttttg agcagacagt taaacaccaa 300 ggaaaagaga aaagacaaag acaaaagttg aagttccggc aggctcgtga taggaaatta 360 gggtttgagg tctacgcaga tgatggcaca attgagcact actttggaag tgcctacact 420 gcgaaaggaa aacagaaagg aaaggtcacg ggtatggggg cgaagaatag gaagtttata 480 aatatgtatg gcttcgaccc gactgagtac tcttttgtga gatttgtgga tccgttgaca 540 ggattggtat ttgatgactc accatacaca gatattcaac tggttcaaga aaagattggt 600 gatgcgaggc ataaggcaat acttgaggat aagctctccc gcgagaggat atcatacaat 660 cctgggatta gtgcatatta tattaatgag attacaaatg cggcattgaa ggtagatctc 720 acaccacaca acccattact tgcatgtgag agacataaca caatagctgg acatccagat 780 catgagggtg aattacggca gactggctcc gttgttaaga ttgatattag agatgtgccg 840 gagaacccag aagaagcatc acttgtggga catgaaagca aatccctttt taggggtttg 900 agggactaca atccaattgc aagtgtaata tgccatttag taaatgaagc agatggtagg 960 acaagtgatt catatggcat tggatatggt ggtctaatca tcacaaacag acatctattc 1020 aagcgtaata atggaactct cacaatacgc tcgcgacatg gggaattcgt gattaagaac 1080 accactcaac tgggtatgaa accatgtgct gaccgtgaca tattgataat aaagatgccc 1140 aaagacatcc caccttttcc acagagactt cagtttaggg ttcccaagga gaatgagcgc 1200 atttgtctag taggttcaaa ctttcaagac aaatctatca caagcactgt ttctgaaacg 1260 agtgtcacat gtcatgtacc aaactcacat ttttggaagc attggataga cacaaaagat 1320 ggacattgtg gcttacctct tgtaagcaca gttgatggtg cgattctggg ggttcatagc 1380 ttgtcaaatc tcacaaacac ccaaaacttc tttgcagctg tccctgcaaa ctttgaaatt 1440 gattacttaa aaacgcccga ggcgactgaa tggattaaga aatggagtta caacccaagc 1500 gaaatctgtt gggggacttt ggaacttaag acagggcaac cagttgcacc ttttaaagtc 1560 accaagttga taacagatct tgacagtatg caagtgtacg ctcaagcgcg ctcggacaaa 1620 tgggtgctag ataggttgta tggaaatttg aaagctgtgg gacagtgtcc agcgcaactt 1680 gttacaaaac acgttgtgaa gggaaagtgt atgctttttg atttgtatct tcaacaagat 1740 cacgatgtta gaaacttttt caaaccttta atgggagcat atgggaagag tagattgaac 1800 aaggaagcat acaacaagga tttattcaag tatgcaactc caatcaatgc aggggatgtg 1860 tgtcacaaaa catttgagca ggcagagcta gcagttgtcg agatgctcaa agcaaatggt 1920 ttccataagt gtaactacat tacagatccg gaggaaattg tcaaggcact caacatgaaa 1980 gcagctgtcg gagcaatgta tagtggaaag aagaaagatt attttgatgg tatgagcgac 2040 gaggatatcg aaaatcttct ttttcacagc tgtaagcggt tgtacatggg gcagaaagga 2100 ctttggaatg gctccttaaa ggctgagctc agacccatgg caaaagttga attgaacaaa 2160 acaagaactt ttacagcggc cccactcgat acacttttgg gtggtaaaac atgtgttgat 2220 gattttaaca atatgtttta caacaaccat ctcaagtgcc catggacagt aggcatcaca 2280 aaattctatc aaggatggga tagattgtta acatctttac ctgaaaattg gatttattgt 2340 gatgcagatg gttctcaatt tgacagctct ctgtcgccct atcttattaa tgctgtcctc 2400 aatatacgga gggaatttat ggaagaatgg gacatagggg accaaatgct ccgaaatttg 2460 tacacagaga ttgtatacac gccgattcta acaccagatg gaaccatagt gaagaagttc 2520 aaaggaaata acagtgggca accatcaacc gtcgtggaca atacactgat ggttgtgttg 2580 gccgtctact acactttgtt gaaattgggt gtttcagagt tcgagatcag tgaacggtgt 2640 gtattctttg caaatgggga tgatctactg atagccatga gaccagatac agcccatctt 2700 ttggatagct tcggtgagtg cttcgctgag cttgggctca actatgactt ttcatcaaga 2760 acaaccaaga aagaggaatt atggttcatg tctcactgtg gaatcaaacg agatggaatg 2820 tacattccca aactcgagcc tgaacgaata gtatctattc ttgaatggga tagatcacat 2880 gagcctgtac acagacttga agcaatttgt gctgcaatgg tggaagcgtg gggctacgat 2940 gaacttctcc accaaattag aaaattctat gcatgggttt taggacaagc accatatagt 3000 gaactagcac gaactggaaa ggctccatat attgctgaaa ctgcacttaa atcattgtat 3060 actggagtac aacctagcgc tgacgatctc agcgagtaca cgcgtgttct taacgagatg 3120 tatgatgata gccttctaca agacaatgat ttatcggtgt atcatcaatc tggtaatccc 3180 cctgaattta aagatgcagg tgcgaaccca ccagcaccaa agccaaaagg gccatttaca 3240 gcaccagaaa tcacagaagt taccgagccg gaggatccca aacaagcagc gctccgcgaa 3300 gctagacaga aacaacctgc cgttacaccc gaatcatacg gtagagacac aggtgagaaa 3360 tctatgcgtt ctgtttcacc acaaagggtg aaagacaaag atgtcaacgt tggcacgaca 3420 ggcacatttt tggtgccacg agttaagctc catactagca aaatgcgcca acctagagtc 3480 aatggcatct ctgtagtaaa tctacaacac ctcgcaactt atgaacctga gcaacataac 3540 attgggaata cacgctcaac tcaggaacag tttcaagcat ggtatgaagg tgttaagggt 3600 gattatggtg ttgatgacgc tggaatgtca atcttgttga atggattgat ggtatggtgc 3660 atagagaatg gaacatctcc aaatataaat ggcgtttgga cgatgatgga tggggatgaa 3720 caagtgacgt accccataaa gccattactg gatcatgcag tgcctacttt taggcaaatc 3780 atgacacact tcagtgacgt tgctgaagcg tatatagaaa tgaggaatcg caccaaggca 3840 tatatgccta ggtatggatt acaacgtaac ttgactgata tgagtcttgc gcgatatgca 3900 ttcgatttct atgagctgca ctcaacaaca cctacacgtg ctaaagaagc acacatgcag 3960 atgaaagcag ctgcacttaa gaatgcgcac aatcggttgt ttggtttgga tggaaacgtc 4020 tccacgcaag aagaggatac ggagaggcac actgcgactg atgtgactag aaatatacat 4080 aacctcttag gaatgagggg tgtgcattag gtgaaacttt gcactgtatt catttactta 4140 tgtggttttt agtatgcctt tattttaaat ccgtgttctt cagtcccgac agagatggtt 4200 gggtgtatcg acagagtggg cttttagcct ggtccttaca cttgagaagt ttctggtcta 4260 ttacgtatca taagggactc ttaaaagtga ggagtacctc gtaagaaaag cctttttggt 4320 tcgtgatcga gcc 4333 //