ID   EF408155; SV 1; linear; genomic RNA; STD; VRL; 789 BP.
XX
AC   EF408155;
XX
DT   31-OCT-2008 (Rel. 97, Created)
DT   29-DEC-2008 (Rel. 98, Last updated, Version 2)
XX
DE   Barley yellow dwarf virus-PAS isolate PAS WPc1 RNA-dependent RNA polymerase
DE   P2 fusion protein and coat protein P3 genes, partial cds; and movement
DE   protein P4 gene, complete cds.
XX
KW   .
XX
OS   Barley yellow dwarf virus PAS
OC   Viruses; Riboviria; Luteoviridae; Luteovirus.
XX
RN   [1]
RP   1-789
RA   Delmiglio C., Pearson M.N.;
RT   "Sequence variation of barley yellow dwarf viruses from New Zealand
RT   grasses";
RL   Unpublished.
XX
RN   [2]
RP   1-789
RA   Delmiglio C., Pearson M.N.;
RT   ;
RL   Submitted (29-JAN-2007) to the INSDC.
RL   School of Biological Sciences, The University of Auckland, 3A Symonds St.,
RL   Private Bag 92019, Auckland 1142, New Zealand
XX
DR   MD5; d10119263e46b3427c2ca7380e01f522.
DR   GrainGenes; EF408155; EF408155.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..789
FT                   /organism="Barley yellow dwarf virus PAS"
FT                   /host="Triticum aestivum"
FT                   /lab_host="Poa cita"
FT                   /isolate="PAS WPc1"
FT                   /mol_type="genomic RNA"
FT                   /country="New Zealand:Otago"
FT                   /note="serogroup: PAS"
FT                   /db_xref="taxon:2169985"
FT   CDS             <1..80
FT                   /codon_start=3
FT                   /product="RNA-dependent RNA polymerase P2 fusion protein"
FT                   /db_xref="GOA:B6RCA4"
FT                   /db_xref="UniProtKB/TrEMBL:B6RCA4"
FT                   /protein_id="ABR26457.1"
FT                   /translation="SVKVTSPHLQSILLSIPENNSHNEY"
FT   CDS             194..>789
FT                   /codon_start=1
FT                   /product="coat protein P3"
FT                   /note="ORF3; translated from subgenomic RNA1"
FT                   /db_xref="GOA:B6RCA5"
FT                   /db_xref="InterPro:IPR001517"
FT                   /db_xref="InterPro:IPR029053"
FT                   /db_xref="UniProtKB/TrEMBL:B6RCA5"
FT                   /protein_id="ABR26458.1"
FT                   /translation="MNSVGRRGPRRANQNGPRRRSRRTIRPVVVVQPNRAGPRRRNGRR
FT                   TGRRGPNSIPGSTGRTEVFIFSVDNLKANSSGTIKFGPSLSQCPALSDGILKSYHRYKI
FT                   TSIRVEFKSHASATTSGAIFVELDTACKQSALGSYINSFTISKTASKSFRAEAINGKEF
FT                   QESTIDQFWLLYKANGTTTDTAGQFIIKINVSMLTP"
FT   CDS             237..698
FT                   /codon_start=1
FT                   /product="movement protein P4"
FT                   /note="ORF4; translated via leaky scanning of subgenomic
FT                   RNA1"
FT                   /db_xref="InterPro:IPR001964"
FT                   /db_xref="UniProtKB/TrEMBL:B6RCA6"
FT                   /protein_id="ABR26459.1"
FT                   /translation="MAQEGGAVEQFGQWLWSNPIEQDPDDEMVDAQEEEGQILYLDQQA
FT                   GLRYSYSQSTTLKPTLPGQSNSVPVYRNAQRFQTEYLSPTTVTRSQVSVLSLSHTRPPL
FT                   RRALSLLNSTPRASNQPWVATLIPSPSAKLPPSPSEPRRLMGRNSKNRR"
XX
SQ   Sequence 789 BP; 239 A; 196 C; 171 G; 183 T; 0 other;
     aaagtgtgaa ggtgacatct ccacatctgc aatcaatcct cctctccatt ccggagaaca        60
     actcgcacaa cgaatattga ttaccaaatc ttggcagggt ttggaatagg gtttatagta       120
     ggtatcccct gtacattagc tctcacgtac tttatttaca ataaagtttc agacactact       180
     agagaggtag tgaatgaatt cagtaggccg tagaggacct agacgagcaa atcaaaatgg       240
     cccaagaagg cggagccgta gaacaattcg gccagtggtt gtggtccaac ccaatcgagc       300
     aggacccaga cgacgaaatg gtcgacgcac aggaagaaga gggccaaatt ctatacctgg       360
     atcaacaggc aggactgagg tattcatatt ctcagtcgac aaccttaaag ccaactcttc       420
     cgggacaatc aaattcggtc ccagtctatc gcaatgccca gcgctttcag acggaatact       480
     taagtcctac caccgttaca agatcacaag tatccgtgtt gagtttaagt cacacgcgtc       540
     cgccactacg tcgggcgcta tctttgttga actcgacacc gcgtgcaagc aatcagccct       600
     gggtagctac attaattcct tcaccatcag caaaactgcc tccaagtcct tcagagccga       660
     ggcgattaat gggaaggaat tccaagaatc gacgatagac caattttggc tactatacaa       720
     ggcaaatggg actactactg acaccgctgg acaattcatt atcaagatta atgtcagtat       780
     gttaactcc                                                               789
//