ID EF508151; SV 1; linear; genomic RNA; STD; VRL; 6416 BP. XX AC EF508151; XX DT 21-APR-2007 (Rel. 91, Created) DT 21-APR-2007 (Rel. 91, Last updated, Version 1) XX DE Grapevine leafroll-associated virus 3 RNA-dependent RNA polymerase 2 gene, DE partial cds; 5 kDa protein, 59.3 kDa protein, and 55.1 kDa protein genes, DE complete cds; and coat protein gene, partial cds. XX KW . XX OS Grapevine leafroll-associated virus 3 OC Viruses; Riboviria; Closteroviridae; Ampelovirus. XX RN [1] RP 1-6416 RA Bonfiglioli R., Belton M.P., Edwards F.; RT "Grapevine leafroll-associated virus 3"; RL Unpublished. XX RN [2] RP 1-6416 RA Bonfiglioli R., Belton M.P., Edwards F.; RT ; RL Submitted (19-MAR-2007) to the INSDC. RL Linnaeus Laboratory, Riversun Nursery, 4 Banks Street, Gisborne, New RL Zealand XX DR MD5; fbe1a6f2a2a0cce3516871b0803a32a9. DR EuropePMC; PMC3519601; 23016734. DR EuropePMC; PMC3568029; 23062082. DR EuropePMC; PMC3627144; 23596440. XX FH Key Location/Qualifiers FH FT source 1..6416 FT /organism="Grapevine leafroll-associated virus 3" FT /isolate="NZ-1" FT /mol_type="genomic RNA" FT /country="New Zealand" FT /db_xref="taxon:55951" FT CDS <1..1029 FT /codon_start=1 FT /product="RNA-dependent RNA polymerase 2" FT /db_xref="GOA:A4ZZ83" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:A4ZZ83" FT /protein_id="ABP49568.1" FT /translation="TPLSNYVTGQNIVYHDRCVTALFSCVFTACVERLKYVVSDRWLFY FT HGMDTKDLARKLKNDLGDIRQYYTYELDISKYDKSQSALMKQVEELILLTLGVDREILS FT TFFCGEYDSVVRTMTRELVLSVGSQRRSGGANTWLGNSLVLCTLLSVVLRGLDYDYVVV FT SGDDSLIFSKRPLDIDTVVLSDNFGFDVKVFNQAAPYFCSKFLVQVEDDLYFVPDPLKL FT FVKFGASKTSDIDLLHEIFQSFVDLSRGFNREDVIQALVHLVTRKYKHSGWTYAALCVL FT HVLSANFSQFCRLYYHNSVSLDVRPVQRSESLSLLALKLRIMRWKAARYTFALGKAKAS FT RR" FT CDS 2626..2763 FT /codon_start=1 FT /product="5 kDa protein" FT /note="similar to other small hydrophobic proteins of FT closteroviruses" FT /db_xref="GOA:A4ZZ84" FT /db_xref="UniProtKB/TrEMBL:A4ZZ84" FT /protein_id="ABP49569.1" FT /translation="MDDFRQAILILVVDFVFVIILLFVISFIVPRLQQGVAFNTGVRTV FT " FT CDS 2782..4431 FT /codon_start=1 FT /product="59.3 kDa protein" FT /note="similar to HSP70; molecular chaperone" FT /db_xref="GOA:A4ZZ85" FT /db_xref="InterPro:IPR013126" FT /db_xref="InterPro:IPR029047" FT /db_xref="UniProtKB/TrEMBL:A4ZZ85" FT /protein_id="ABP49570.1" FT /translation="MEVGIDFGTTFSTICFSPTGIAGCTPVSGSVFVETQIFIPHGSSS FT YFIGKAAGKAFREGTPGRLYVNPKRWVGVTRDNIERFIEKLKPTYTVKIDSGGALLMGG FT LGSGPDVLLRVVDVICLFLKALILECERQTSSTVTAAVVTVPADYNSFKRNFVVEALKG FT LGIPVRGVVNEPTAAALFSLAKSKVEDLLLAVFDFGGGTFDVSFVKKKGNVLCVIFSVG FT DNFLGGRDIDRAIVEVIKQKIKGKTSDAKLGIFVSSIKEDLSDNSAITQHLVPVEGGIE FT VADLTSEELDAIVAPFSERAVEVFKTGLSNFYPDPVIAVMTGGSSALSKVRKDVAALPQ FT ISKVVFDSSDFRCSVACGAKVYCDILAGSSDLRLVDTLTNTLTDEVSDFTPVVIFPKGS FT PIPCSYTHTYDVHGGDVVYGIFEGEYNRAFLNEPTFRGLSTHRGDPKEKDVAQFNLSTD FT GTVSLIVNGVDIKNEYLVPGTTDILNSLTYKSGRDELEAKAIPEYLTTLNVLHTKNFTK FT RNLDVKDKEFSSLRIEDNFNKSKINPQSLLDG" FT CDS 4424..5875 FT /codon_start=1 FT /product="55.1 kDa protein" FT /note="similar to other 55kDa proteins from FT closteroviruses" FT /db_xref="GOA:A4ZZ86" FT /db_xref="UniProtKB/TrEMBL:A4ZZ86" FT /protein_id="ABP49571.1" FT /translation="MDKYCYITGILDPSAARSEVFKVVNKEYIGPSGRSFSKGTSKYTV FT LWDGSAARVSGFASAAQATVDAFAYFLLKGGLTTTLSYPGNCERYVRTSADLTSLFRRL FT ERGRIYASRSIDSGLPYEDRKKIEEASRRLSPSDAAFCKAVSVQVGRFVDPTKQLEIAE FT IPLRVMKLNKRVGSNQTSLPKVVSAFVDFFTDLQELLSDEVLKARTDTVSVYATESMEF FT MIRMLPLTSKEQWLRDLLGYLLVRRRPVNFSYDSRVSWVYDVVATIKVALKLFFNKDML FT GGIKELKPYVPIESFDPFHELSSYFSRLSYQLSAGKGAKICPELAEKLVRRLMEDNYRL FT RLTPVVSLIIILVYYSIYGTNATRIMRRPCCLRVTIRGKLDEVSLLGVEDRAHKLSEKR FT GINAQRIVCRYYSDLTCLVRRRYNIHRNNWKTLNYVDGRLAYDTADCITSRVKNMVDLA FT DHTRIIQYIKTNDNQVTGTTMPHQQ" FT CDS 5970..>6416 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:A4ZZ87" FT /db_xref="UniProtKB/TrEMBL:A4ZZ87" FT /protein_id="ABP49572.1" FT /translation="MAFDLKLGQIYEVIPENNLRVRVGDAAQGKFSKPELLKHVKDGTQ FT TELTTIPVVPDKYVFATAALAAAAAVPARPAPAPVVETPETEVGVVPESETLTPNKLVF FT EKDPDKFLKTMGKGIALDLTGVTHKPKVINEPGKVSVEVAMKINA" XX SQ Sequence 6416 BP; 1623 A; 1186 C; 1674 G; 1933 T; 0 other; acacctttgt cgaactacgt cacagggcaa aatattgttt atcatgatag gtgtgttact 60 gcgctctttt cttgtgtttt tacagcttgt gtagaacgtt taaagtatgt agttagcgat 120 aggtggctgt tctaccatgg gatggacacg aaagatttgg caagaaaatt gaaaaacgat 180 ctgggcgaca ttcgtcagta ctacacctat gaactggata tcagtaagta tgacaaatct 240 cagagtgctt taatgaagca ggtggaggag ttgatactct tgacgcttgg tgtcgatagg 300 gagattttgt ctaccttctt ttgtggtgag tacgatagcg tggtaaggac aatgaccaga 360 gagttggtgt tgtccgtcgg ctctcagaga cgtagtggtg gggccaatac ttggttgggg 420 aacagcttag ttttatgtac tcttttaagc gtagtactta ggggtttaga ttacgattac 480 gtcgtcgtta gtggcgacga tagccttatt tttagtaagc gaccgttgga tatagatacc 540 gtggttctaa gtgacaattt tggtttcgac gtgaaggtat ttaaccaagc ggcgccgtat 600 ttttgttcta agtttttagt tcaagtagaa gatgacctgt atttcgttcc agaccctctg 660 aagctatttg ttaagtttgg agcttcaaaa acatctgaca tcgatttgct gcacgaaatt 720 tttcagtctt ttgtggattt atcgaggggt tttaataggg aagacgtcat acaggcttta 780 gttcacttag tgactagaaa gtataagcat tcagggtgga cttacgctgc actctgcgta 840 ttacatgttt tgagtgcaaa tttttcacag ttttgtagat tgtactatca taacagtgtt 900 agtttggacg tacgcccagt tcaaaggtct gagtcgcttt cccttttggc tttgaagttg 960 cgcattatga gatggaaagc agctcggtat acctttgctc ttggtaaagc taaggctagt 1020 cgtcgttaat actgttttac tgtgccttgg ttgtccgtga gggtaatacc ggacgatcaa 1080 cgtaccttcc agttatgttt tctttcatac gcgtgccatc cgtgaagtta ataccggtgg 1140 cccttctagt tcttggtcta gtttgtctta gtttgtcttt catactaagt aatttgcgcg 1200 ttaccgtagt gttttggtag cgcgcactca aacgtttttc ttttctttta cttacgcgtg 1260 ccgtccgtga ggttaatacc ggcggctttt gtatatattc taactgtttg acagcgtttt 1320 tatttttagg acggttttcc catttacgct tccactggtt ctacgggatg aagatacttt 1380 cttcattttc tttcgagtgg atggaactca tgttgatagc acgtcaaggg tcgtgtcttt 1440 tcagtgaggg ccgaggtgtg aatggggcca acaggtgact aacagcctgc cctttaaggg 1500 cgctggaagt gttaggttcg gcaagtgtat atgttagggc gccgagcatc cgttaggaat 1560 gtatagtcta acgtagctta gggtgtcttt ggtggacgac gggagtgcgt agtgttaggt 1620 ccataggcct ttctacggtt cgtggagagg tgttgtggac aagggtgttc gacagccagc 1680 tcgaaaacgg agcgctagaa gtgtcgagtc ctggaggtat atatgggtta agacaggaca 1740 tggtcagaag cgttgccagt tgggacctgc gagtgcaacg cgtgccgtcg caacgctgag 1800 cattgggaac ctcagcggtc tttttgcatt ggcggcagtt ttaggcgccg taaagtaggg 1860 tcgtaaatgt gggggtcgga caaagcaacc tactgcttag cggcaccagc ctaagagagg 1920 cagggcaggc cgagtcccca tgaagggtgg gtaaatatgt cgctaagcgg cgcggcgtcg 1980 ctagagacgc cagtccttag ttaggtggct cgctttttca tagagccttt tagttttgta 2040 caggttttaa tttgtgtata tttaatttat ttatttttta ttatttgtag ttatagggaa 2100 gatttagtat tttcttttca ttcttttgtt agttggtttt tgtagttcta gtatagcctt 2160 agtagttttt cctcgttggg tatgctagta actcaacgcg ttttcttttt gtttttcttt 2220 attttctttt tgtacctcat gcacgttttt ctcgacgtgt gtgttgtttt ccttagcgta 2280 tattaaatat tgtaacgcgt gtacgcgggg tttttcctcc tcggttttct acgtttgttt 2340 tcggagcgct tatttgtttt ccttattggc gggagtggga attgcccgtt tttcttacgt 2400 gttttacttt tactcggttt caatgagctg gttggtcatc acattattgt agtatgtact 2460 aaacgacatt acgctgatag tctttccatt tgaaaggggt tagacgtgag agtgtcttgt 2520 tgcgatggtt gtcgttatta ggagttagta cgtatggtta acgtgctttt ccgtactgtg 2580 cggtgctaag ctaatattta aacttttgag tagggagagt ggtgtatgga cgatttcaga 2640 caagctatac taatactagt ggtcgacttt gttttcgtta tcatccttct gtttgttatt 2700 tcttttatag tcccaaggtt acaacagggc gtagccttta ataccggcgt taggaccgta 2760 taatcaagtg aaaaggtcgt gatggaggtg ggcatagact ttggtacgac tttcagtact 2820 atttgctttt cacctacggg gatagccgga tgtacaccgg tgtcgggaag cgttttcgtc 2880 gaaacccaga tttttatacc acacggaagt tcgagttact tcataggtaa agcagccgga 2940 aaggcgtttc gtgaaggtac gcccggcagg ttgtacgtta acccaaaaag gtgggtagga 3000 gtgacaaggg acaatatcga gcgtttcatc gagaaactaa aacccactta tacagtgaaa 3060 atagacagtg gaggtgcttt attaatgggg ggtttaggtt ccggaccaga tgttttgcta 3120 cgggtagtag atgttatatg tttattctta aaggcgttaa tactagagtg tgaacgacag 3180 acgtcgtcaa ccgtgaccgc tgccgttgta acggtgccag cagattacaa ctccttcaag 3240 cgaaatttcg ttgtggaggc ccttaagggg ctgggaatac cggtaagagg cgtcgttaac 3300 gagccgacag cagcagcctt gttttcctta gctaagtcga aggtagaaga cctgctattg 3360 gcagttttcg acttcggggg tggaactttc gacgtctcct tcgtgaagaa aaagggtaac 3420 gtgttgtgcg ttattttttc cgttggtgat aattttttag gcggtaggga catagataga 3480 gctatagttg aagtcattaa acaaaagatc aaaggaaaaa cgtcggacgc gaaattgggg 3540 atatttgtat cttcaataaa ggaggacttg tccgataaca gcgccataac acaacacctt 3600 gtgccagtgg aaggtggtat tgaggtcgcg gatttgacct cagaagaatt ggacgctata 3660 gtcgctccgt ttagcgaaag ggcggtggaa gtattcaaga cgggtttaag caatttttac 3720 cctgatccag ttatcgccgt tatgactggt ggttcgagtg ctctctcgaa agtgcgtaaa 3780 gacgtggcgg cgttacctca gatatctaag gtggtgtttg acagctctga ttttagatgt 3840 tctgtagcgt gcggtgcgaa agtttactgt gatattttag ccggtagtag cgatctacga 3900 cttgtagaca ctttgacaaa cacacttacg gatgaggtgt cagactttac gccagtcgtg 3960 attttcccga agggtagtcc aataccctgt tcttatacgc acacgtacga cgtgcatggt 4020 ggcgacgtcg tttatggtat atttgaggga gagtacaata gggccttttt gaatgaacca 4080 actttccgcg gtttgtcgac gcacagagga gatcctaaag aaaaggacgt agctcagttt 4140 aatttgtcaa ctgacggtac tgtgtcttta atagtgaacg gggtggatat taaaaatgaa 4200 tatctggtgc caggcaccac cgacatcctg aactcgctaa cgtacaagtc aggaagggac 4260 gaattggaag ctaaagcaat acctgagtat ttgaccacgc tgaatgtttt acacacaaag 4320 aatttcacaa agaggaattt ggacgtaaag gataaagaat tttctagttt gcgcatagaa 4380 gataatttta ataaatcgaa gattaatccg cagtcgcttc tagatggata agtattgtta 4440 tatcactggt atcctagatc ctagtgctgc taggtcggag gtgttcaaag tcgtaaacaa 4500 ggaatacata ggaccgagtg gtcgatcgtt ttcaaagggt acgagtaagt acaccgtatt 4560 gtgggacggt agcgccgcaa gggtgagcgg cttcgcttct gccgcgcaag ctacggtgga 4620 tgctttcgcg tacttcttgt taaaaggcgg cttaactaca acactctcgt atccaggcaa 4680 ttgcgagagg tacgttagga cgtcagcgga tttaaccagc ctattcagga ggttggaacg 4740 gggaagaatt tacgcatcgc gatccataga tagcggtctt ccgtatgagg ataggaagaa 4800 aattgaggag gcgtcgcgtc gtttatcgcc gtcggacgct gctttctgca aggccgtctc 4860 cgttcaagtt ggaaggtttg tagatccaac gaaacagtta gaaattgccg aaataccgtt 4920 acgtgtgatg aagctaaata aaagagtcgg gtcaaaccag acatccttac ctaaggtggt 4980 ctctgcgttc gttgactttt ttaccgattt acaggagctt ctgtctgatg aggtgctaaa 5040 ggccagaact gacacagtgt ccgtttatgc gacggaatct atggagttca tgatcaggat 5100 gttgccacta acctctaaag aacaatggtt gagagaccta ctcggatacc tcttggttag 5160 gaggcgcccc gtaaactttt cctacgattc cagagtttct tgggtctacg atgtcgtggc 5220 cacaattaag gttgctctaa aacttttctt taataaggac atgttaggtg gtatcaagga 5280 actaaaaccc tatgtaccaa tcgagtcgtt cgatcccttt catgaactgt cgtcttattt 5340 ttcaaggcta agttaccaac taagcgctgg gaaaggcgct aagatatgcc ctgagctcgc 5400 agagaaatta gttcgccgtc tcatggaaga taattacagg ttgagattaa ctccggtggt 5460 ctcgttgatt ataatattgg tttattattc catctacggg accaacgcta ctaggataat 5520 gagacgccca tgctgcttga gggtcactat taggggtaaa cttgacgaag tttcgctgtt 5580 aggagtcgaa gatcgagctc acaaattgtc ggagaagcgc ggaataaacg ctcagcgtat 5640 cgtatgtagg tactatagcg acttgacgtg cttagtccga cggcgttata acattcacag 5700 aaacaattgg aagacgttaa actacgttga cggtaggtta gcatatgata ccgctgactg 5760 tataacgtcc agagtgaaga acatggtgga tctagctgac cacactagga ttatacagta 5820 tataaagacg aacgacaatc aagtcactgg gactacgatg ccacatcagc aataatgctg 5880 tattagcgat ggtacgatgg ttctcgtatt tattttataa agaagtttta attattttgt 5940 cagtaaacgc attgctttga gtaacactga tggcttttga tttaaaattg gggcagatat 6000 atgaagtaat tcccgagaat aacttaagag taagggtagg cgatgccgca caagggaagt 6060 tcagcaaacc agaactctta aagcatgtta aggacggtac tcaaactgaa ttgacgacta 6120 taccggtggt gccggataag tacgtgtttg ctacggccgc tctagcggca gcggcggcgg 6180 taccggctag accggcacca gcaccagtgg tggagacgcc cgaaacggaa gtaggtgtag 6240 taccggagtc ggagactcta acaccaaata agctcgtttt cgagaaagat ccggacaaat 6300 ttttgaagac gatgggtaag ggtatagcat tggatctaac cggggtcact cataaaccaa 6360 aagttattaa tgaaccagga aaagtgtccg tggaggtggc catgaaaata aacgcc 6416 //