ID EF521844; SV 1; linear; genomic RNA; STD; VRL; 5664 BP. XX AC EF521844; XX DT 24-APR-2007 (Rel. 91, Created) DT 24-APR-2007 (Rel. 91, Last updated, Version 1) XX DE Barley yellow dwarf virus - PAV isolate 014, complete genome. XX KW . XX OS Barley yellow dwarf virus PAV OC Viruses; Riboviria; Luteoviridae; Luteovirus. XX RN [1] RP 1-5664 RA Beckett R.J., Miller W.A.; RT "BYDV/CYDV Global Sequencing Project"; RL Unpublished. XX RN [2] RP 1-5664 RA Miller W.A.; RT ; RL Submitted (27-MAR-2007) to the INSDC. RL Plant Pathology, Iowa State University, 470 Bessey Hall, Ames, IA 50011, RL USA XX DR MD5; be88907538ffad4617b61514aa8acfd4. DR EuropePMC; PMC4422679; 25946037. DR RFAM; RF00434; BTE. DR RFAM; RF01508; BYDV_5_UTR. XX FH Key Location/Qualifiers FH FT source 1..5664 FT /organism="Barley yellow dwarf virus PAV" FT /host="barley" FT /isolate="014" FT /serotype="PAV" FT /mol_type="genomic RNA" FT /country="USA:Iowa" FT /collected_by="Allen Miller" FT /db_xref="taxon:2169986" FT primer_bind 1..19 FT /note="derived from viral specific primer used for RT-PCR" FT CDS join(142..1158,1158..2744) FT /codon_start=1 FT /ribosomal_slippage FT /product="RNA-dependent RNA polymerase" FT /note="RdRp; P1-P2 fusion created by -1 ribosomal FT frameshift" FT /db_xref="GOA:A5A2Z6" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013674" FT /db_xref="UniProtKB/TrEMBL:A5A2Z6" FT /protein_id="ABP68774.1" FT /translation="MFFEILIGASAKAVKDFISHCYSRLKSIYYSFKRWLMEISGQFKA FT HDAFVNMCFGHMADIEDFEAELAEEFAEREDEVEEARSLLKLLVAQKSRTGVTEAWTDF FT FTKSRGGVYAPLSCEPTRQELEVKSEKLEKLLEEQHQFEVRAAKKYIKEKGRGFINCWN FT DLRSRLRLVKDVKDEAKDNARAAAKIGAEMFAPVDVQDLYSFTEVKKVETGLMKEVVKE FT KNGEEEKHLEPIMEEVRSIKDTAEARDAASTWITETVKLKNSTLNADELSLATIARYVE FT NVGDKFKLDIASKTYLKQVASMSVPIPTNKDIKLKMVLQSPEARARRERMDVLDSVGFL FT EGLCTASGFESPFPILGLPEIAVTDGARLRKVSSNIRYLSQTHLGLVYKAPNASLHNAL FT VAVERRVFTVGKGDKAIYPPRPEHDIFTDTMDYFQKSIIEEVGYCRTYPAQLLANSYSA FT GKRAMYHKAIASLRTVPYHQKDANVQAFLKKEKHWMTKDIAPRLICPRSKRYNIILGTR FT LKFNEKKIMHAIDSVFGSPTVLSGYDNFKQGRIIAKKWQKFACPVAIGVDASRFDQHVS FT EQALKWEHGIYNGIFGDSELALALEHQITNNIKMFVEDKMLRFKVRGHRMSGDINTSMG FT NKLIMCGMMHAYFKKLGVEAELCNNGDDCVIITDRANEKLFDGMYDHFLQYGFNMVTEK FT PVYELEQLEFCQSKPVSINGKYRMVRRPDSIGKDSTTLLSMLNQSDVKSYMSAVAQCGL FT VLNAGVPILESFYKCLYRSSGYKKVSEEFIKNVISYGTDERLQGRRTYNETPITNHSRM FT SYWESFGVDPKIQQIVERYYDGLTVSAQLQSVKVTTPHLQSILLSIPENHSQNEY" FT CDS 142..1161 FT /codon_start=1 FT /product="P1" FT /note="ORF1" FT /db_xref="GOA:A5A2Z7" FT /db_xref="InterPro:IPR013674" FT /db_xref="UniProtKB/TrEMBL:A5A2Z7" FT /protein_id="ABP68773.1" FT /translation="MFFEILIGASAKAVKDFISHCYSRLKSIYYSFKRWLMEISGQFKA FT HDAFVNMCFGHMADIEDFEAELAEEFAEREDEVEEARSLLKLLVAQKSRTGVTEAWTDF FT FTKSRGGVYAPLSCEPTRQELEVKSEKLEKLLEEQHQFEVRAAKKYIKEKGRGFINCWN FT DLRSRLRLVKDVKDEAKDNARAAAKIGAEMFAPVDVQDLYSFTEVKKVETGLMKEVVKE FT KNGEEEKHLEPIMEEVRSIKDTAEARDAASTWITETVKLKNSTLNADELSLATIARYVE FT NVGDKFKLDIASKTYLKQVASMSVPIPTNKDIKLKMVLQSPEARARRERMDVLDSVGF" FT CDS 2858..4810 FT /codon_start=1 FT /transl_except=(pos:3458..3460,aa:OTHER) FT /product="aphid transmission protein" FT /note="P3-P5 fusion created by ribosomal read-through of FT the ORF3 stop codon" FT /db_xref="GOA:A5A2Z8" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:A5A2Z8" FT /protein_id="ABP68777.1" FT /translation="MNSVGRRGPRRANQNGTRRRRRRTVRPVVVVQPNRAGPRRRNGRR FT KGRGGANPVFRPTGGTEVFVFSVDNLKANSSGAIKFGPSLSQCPALSDGILKSYHRYKI FT TSIRVEFKSHASATTAGAIFIELDTACKQSALGSYINSFTISRTASKVFRAEAINGKEF FT QESTIDQFWMLYKANGTTTDTAGQFIITMSVSLMTAKXVDSSTSEPKPAPEPTPTPQPT FT PAPQPAPEPTPAPVPKRFFEYIGTPTGTISTRENSDSISVSKLGGQSMQYIENEKCETK FT VIDSFWSTNNNVSAQAAFVYPVPEGSYSVNISCEGFQSVDHIGGNEDGYWIGLIAYSNS FT SGDNWGVGNYKGCSFKNFLATNTWRPGHKDLKLNDCQFTDGQIVERDAVMSFHVEATGT FT DACFYLMAPKTMKTDKYNYVVSYGGYTNKRMEFGTISVTCDESDVEAERITRHAETPIR FT SKHILVSEQYEQPLPTIIDQGLCDVQTPEQEQTLVDEEDKQTVSTEPDIALMEYEAATA FT EIPDAEEDVLPSKEQLSSKPVDTSGNKIPKPKEPEVLGTYQGQNIYPEDVPPIARQKLR FT EAANAPSTLLYEKSSKKSNNFLTRFVEANRSPTTPAAPTVSTVSNMTREQLAEYTRIRK FT SLGLTAAKEYKAQFQ" FT CDS 2858..3460 FT /codon_start=1 FT /product="coat protein" FT /note="ORF3; P3" FT /db_xref="GOA:Q2V8U4" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q2V8U4" FT /protein_id="ABP68775.1" FT /translation="MNSVGRRGPRRANQNGTRRRRRRTVRPVVVVQPNRAGPRRRNGRR FT KGRGGANPVFRPTGGTEVFVFSVDNLKANSSGAIKFGPSLSQCPALSDGILKSYHRYKI FT TSIRVEFKSHASATTAGAIFIELDTACKQSALGSYINSFTISRTASKVFRAEAINGKEF FT QESTIDQFWMLYKANGTTTDTAGQFIITMSVSLMTAK" FT CDS 2901..3362 FT /codon_start=1 FT /product="movement protein" FT /note="P4; ORF4 translated via a leaky scanning mechanism" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:A5A2V8" FT /protein_id="ABP68776.1" FT /translation="MAQEGGAVEQFGQWLWSNPIEQDPDDEMVDAREEEGQILYLDQQA FT GLRYSYSQSTTLKPTLPGQSNSAPVYRNAQRFQTEYLSPTTVTRSQVSVLSLSHTRPQL FT RPALSLLNSTPRANNQPWVATLIPSQSAGPPQRSSEPKRLMGRNSRNQR" FT CDS 4917..5042 FT /codon_start=1 FT /product="P6" FT /note="ORF6; highly variable sequence" FT /db_xref="GOA:A5A301" FT /db_xref="InterPro:IPR009426" FT /db_xref="UniProtKB/TrEMBL:A5A301" FT /protein_id="ABP68778.1" FT /translation="MDDLHVIAVCILALTVLTGLGAVVGCCAGCLHPPPPFRSSV" FT primer_bind complement(5649..5664) FT /note="derived from viral specific primer used for RT-PCR" XX SQ Sequence 5664 BP; 1674 A; 1372 C; 1384 G; 1234 T; 0 other; agtgaagatt gaccatctca caaaagctgt tacgtgcttg taacacacta cacactcgtt 60 ttgtgttcga gaagtagttg caacaacggt ccccttattg cctgacaagc tgagggccac 120 ccttctatcc ccaccgccat catgttcttc gaaatactta taggagctag cgctaaggcg 180 gtcaaagact tcatcagtca ttgttactct cgtttaaaat ctatatatta ttcttttaaa 240 cgatggctga tggagatatc cgggcagttt aaggcccatg acgcctttgt caacatgtgc 300 ttcggccaca tggctgacat tgaggacttc gaggcagagc tcgctgagga gtttgccgag 360 agggaggatg aggtggaaga ggcgaggagc ctcttgaaac tgctggtcgc ccaaaaatct 420 agaactgggg tgaccgaggc ttggaccgac ttctttacga agtcgagagg tggcgtctat 480 gcgccacttt cctgcgagcc taccaggcag gagctagaag tcaagagcga gaagctcgaa 540 aaacttctag aagaacagca ccaattcgag gtgcgagcgg ccaagaaata tatcaaggaa 600 aagggccgcg gcttcatcaa ctgctggaac gacttgcgaa gtcgtctcag gctggtgaag 660 gacgtcaagg acgaggcgaa ggacaatgcc agagctgctg ccaagatcgg agcagaaatg 720 ttcgcccccg ttgacgtgca ggacctctac agttttacag aggtcaagaa ggtggagacc 780 ggcctcatga aggaggtcgt gaaagagaaa aacggcgaag aagagaaaca cctcgagccc 840 atcatggaag aggtgagatc tatcaaagac accgccgaag ccagggacgc cgcctccacc 900 tggataacag agacagttaa gctgaagaac tcaacgctta acgcagatga attgtctctg 960 gccaccatcg cccgctacgt tgaaaacgta ggggataaat tcaaactcga cattgctagc 1020 aagacatatc tgaagcaagt cgcatcgatg tctgtaccaa ttccaaccaa caaggacatc 1080 aaattgaaga tggtgctgca gagtcctgaa gcacgtgcca ggcgggaacg catggacgtg 1140 cttgactctg tgggttttta gaggggctct gtaccgcctc tggttttgag agcccattcc 1200 ccattctcgg gctgccagag attgcggtca cagacggagc ccggctccgt aaggttagta 1260 gtaatattag ataccttagc caaacccacc taggtcttgt atataaagca ccaaatgcct 1320 ccctgcacaa tgcgcttgta gcagtggaga gaagagtttt tacagtagga aagggggaca 1380 aagcaatcta ccccccccgc ccagagcatg acattttcac tgatacaatg gattacttcc 1440 aaaaatccat tatagaagag gtgggatact gtagaacata tccagcgcaa ctcctggcta 1500 atagctatag cgcaggaaag agggccatgt atcacaaagc cattgcatca ttgaggactg 1560 tcccttatca tcagaaagat gctaatgtgc aagctttcct gaagaaggaa aaacattgga 1620 tgaccaagga catcgccccc cgattgattt gcccccgcag caagcggtac aacatcatcc 1680 taggaactcg tttgaaattc aacgagaaga agatcatgca cgctatcgat agtgtgttcg 1740 gatcccccac tgtgctttct ggctatgaca acttcaaaca aggaagaatc atagccaaga 1800 agtggcaaaa gtttgcatgc cccgtcgcca tcggcgtgga tgctagccgc tttgaccaac 1860 acgtgtcaga gcaggcgctt aagtgggaac acgggatata caatgggatc ttcggagaca 1920 gcgaactggc tctggcactt gaacaccaaa tcaccaacaa catcaagatg tttgttgaag 1980 acaaaatgct taggttcaag gtaagaggcc acagaatgtc cggtgacatt aataccagca 2040 tgggaaataa gctcataatg tgcggcatga tgcatgcata tttcaagaag ctgggtgttg 2100 aagctgaact ttgcaacaac ggagacgact gtgtcatcat cactgataga gccaatgaga 2160 agctctttga tggcatgtac gaccatttcc tccagtatgg cttcaacatg gtgaccgaaa 2220 aaccagttta cgaactggaa caattggagt tttgccagtc aaaaccggtc tctattaatg 2280 gaaagtatag aatggtcaga aggcccgata gcataggcaa agatagcaca acactactga 2340 gcatgctcaa tcaatccgac gtcaagagct atatgtcggc tgttgctcag tgtggtctgg 2400 tgctcaacgc tggagtaccc atacttgaaa gtttctataa atgcctatat agaagctcgg 2460 ggtacaagaa agtgagtgag gaatttatta aaaacgtcat atcgtatgga acagatgaga 2520 gactacaagg tagacgtacc tataatgaaa cacctatcac aaaccacagt agaatgtcct 2580 actgggaatc attcggagtt gaccctaaga tacagcaaat cgtcgagagg tactacgacg 2640 gtcttacggt aagtgcccaa ctccagagtg tgaaggtgac gactccacat ctgcaatcaa 2700 tactgctttc cataccggaa aaccactcac aaaacgaata ttaattacca gatcttagct 2760 gggtttggga tagggttcat agttagtata ccctgtacat tagctctcgc gtactttatt 2820 tacaataaag tttcagacac cactagagag gtggtgaatg aattcagtag gccgtagagg 2880 acctagacgc gcaaatcaaa atggcacaag aaggaggcgc cgtagaacag ttcggccagt 2940 ggttgtggtc caacccaatc gagcaggacc cagacgacga aatggtcgac gcaagggaag 3000 aggaggggca aatcctgtat ttagaccaac aggcgggact gaggtattcg tattctcagt 3060 cgacaacctt aaagccaact cttccggggc aatcaaattc ggccccagtc tatcgcaatg 3120 cccagcgctt tcagacggaa tacttaagtc ctaccaccgt tacaagatca caagtatccg 3180 tgttgagttt aagtcacacg cgtccgcaac tacggccggc gctatcttta ttgaactcga 3240 caccgcgtgc aaacaatcag ccctgggtag ctacattaat tccttcacaa tcagcaggac 3300 cgcctcaaag gtcttcagag ccgaagcgat taatgggaag gaattccagg aatcaacgat 3360 agaccagttt tggatgctct acaaagccaa tggaaccacc actgacacgg caggacaatt 3420 catcatcacg atgagtgtca gtttgatgac ggccaaatag gtagactcct caacatcgga 3480 accgaaacca gcaccagaac ctacaccaac cccacagcca acgccagctc cacagcccgc 3540 acccgaaccg actcctgcac cagtccccaa aagattcttt gagtatatcg gcactccaac 3600 cggtacaatc tcaacaagag agaactctga cagtatttct gtcagcaagc tcggtggaca 3660 gtcgatgcag tacatagaga atgagaagtg tgaaacaaag gtcattgact ccttctggag 3720 cactaacaac aacgtgtctg cacaggcagc cttcgtttac ccggtgccag aaggatcata 3780 cagtgtgaac atttcgtgcg aaggctttca atccgttgac cacataggag gcaacgaaga 3840 tggttattgg attggtttaa ttgcctactc caattcgtca ggagacaatt ggggggtagg 3900 caactacaaa gggtgcagtt tcaagaactt cttggcaacc aacacttgga gaccaggcca 3960 taaggatctc aagttgaacg attgccagtt cacagatgga caaatagttg agagggatgc 4020 cgtgatgtct ttccatgtgg aagcaacagg tactgatgcc tgtttctatc tcatggctcc 4080 caaaacaatg aaaactgaca aatacaacta tgttgtctca tatggagggt acacaaacaa 4140 acggatggaa tttggtacca tatctgtgac atgtgatgaa tctgatgttg aggcagaacg 4200 cataacaagg catgctgaaa cacccatacg ttccaaacac attcttgtgt ccgaacagta 4260 cgagcaacct ttacccacca taatcgatca aggcttgtgt gatgtgcaaa ctcccgagca 4320 agaacaaaca ctggtggatg aagaagacaa acagactgtt tccacagaac ctgatatagc 4380 actcatggaa tatgaagctg caacagccga aattccggat gctgaagagg atgttttgcc 4440 ctccaaggaa cagctgtctt ctaaaccggt ggacacgtcc ggcaacaaaa tacctaagcc 4500 caaggaacct gaagtacttg gaacatacca gggacagaat atttaccctg aagacgtgcc 4560 accaattgcg cggcaaaaac tacgtgaagc cgcaaatgca ccctccacac tactctacga 4620 gaaatcttct aagaagagca acaatttctt gactcgtttt gtggaggcga ataggtcccc 4680 tacaactcca gctgccccaa cagtgtcaac tgtatcaaac atgacaaggg aacagcttgc 4740 ggagtacact agaattagga aatcccttgg actcacagca gcgaaggaat acaaggcgca 4800 atttcagtga aggcaacacc actagcacaa atcggatcct gggaaacagg cagaactacg 4860 gttcataagc tcgggtaggc cgtcaaccta ccgccgcatc gtattgtgtt tggccgatgg 4920 atgacctcca cgttatcgcc gtttgtattc ttgctctaac tgtgttgaca gggttaggcg 4980 cggtggtcgg ctgttgtgcc ggctgcctcc acccccctcc ccccttccgc tcttctgttt 5040 aagtaaaatc tctcggtctg tgcgagagaa actcaaaaat atcggggagc ttcggctcag 5100 tgaggggatt aacgaccccc agtaaaggct ggtcttggcg gacttgaata acccgctata 5160 agacgaagtg gtaaccgcca ctgatcaaat ggtgaacatg cttctgtgtc gtacactgcc 5220 ccggagccca ccgggttaac aaggctattc cgccagctcg atgaaatgag agtggagtgg 5280 acggagtggg tgacttcgtg atgtacaccc gatcgtcagg attgaagacg ttaaaactcg 5340 acgacctagt gcaagtcgtt aaactgacta gggtggatac accacaccct gcctaacttg 5400 taggcatacc cacgatacga aacgtgggtc tcttggagcc actacctgtg atgcaaggta 5460 gggtatgagt cttagcaagc tctgtgccag gagatggaca taaaccatag caatcctgca 5520 agtcaccctg gcgaatcata ggtgaaccgt gccacgggcc tgcctaccga aaggaaaagc 5580 agtatccaac acagcaatgt gttgggggtt acacccttcg gggtactctt aacgctgaca 5640 ctcgaaagag cagttcggca accc 5664 //