ID EU332318; SV 1; linear; genomic RNA; STD; VRL; 5657 BP. XX AC EU332318; XX DT 22-JAN-2008 (Rel. 94, Created) DT 07-JUL-2011 (Rel. 109, Last updated, Version 2) XX DE Barley yellow dwarf virus-PAV isolate 05YL8 RNA-dependent RNA polymerase, DE P1, aphid transmission protein, coat protein, movement protein, and P6 DE genes, complete cds. XX KW . XX OS Barley yellow dwarf virus PAV OC Viruses; Riboviria; Luteoviridae; Luteovirus. XX RN [1] RC Publication Status: Online-Only RP 1-5657 RX DOI; 10.1371/journal.pone.0016896. RX PUBMED; 21326861. RA Wu B., Blanchard-Letort A., Liu Y., Zhou G., Wang X., Elena S.F.; RT "Dynamics of molecular evolution and phylogeography of Barley yellow dwarf RT virus-PAV"; RL PLoS One 6(2):E16896-E16896(2011). XX RN [2] RP 1-5657 RA Liu S., Wang X., Liu Y., Zhou G.; RT "Population genetic diversity of BYDV-PAV from China"; RL Unpublished. XX RN [3] RP 1-5657 RA Liu S., Wang X., Liu Y., Zhou G.; RT ; RL Submitted (07-DEC-2007) to the INSDC. RL Plant Pathology, Institute of Plant Protection, Chinese Acadamy of RL Agricultural Sciences, West Yuanmingyuan Road No.2, Beijing 100094, China XX DR MD5; 52fc21a788bacddc9eb6b7a9560d3928. DR EuropePMC; PMC4422679; 25946037. DR RFAM; RF00434; BTE. DR RFAM; RF01508; BYDV_5_UTR. XX FH Key Location/Qualifiers FH FT source 1..5657 FT /organism="Barley yellow dwarf virus PAV" FT /host="wheat" FT /isolate="05YL8" FT /serotype="PAV" FT /mol_type="genomic RNA" FT /country="China:Yangling" FT /db_xref="taxon:2169986" FT CDS join(140..1156,1156..2742) FT /codon_start=1 FT /ribosomal_slippage FT /product="RNA-dependent RNA polymerase" FT /note="RdRp; P1-P2 fusion created by -1 ribosomal FT frameshift" FT /db_xref="GOA:B0FKR6" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013674" FT /db_xref="UniProtKB/TrEMBL:B0FKR6" FT /protein_id="ABY73607.1" FT /translation="MFFEILIGASAKAVKDFISHCYSRLKSIYYSFKRWLMEISGQFKA FT HDAFVNMCFGHMADIEDYEAELAEEFAEREDEVEEARSLLKLLVAQKSKSGVTEAWNDF FT FLKSRGGVYAPLSCEPTKQELEVKSEKLERLLDEQHQFEVRAAKKYIKEKGRGFINCWN FT DSRSRLRLVKDVKDEAKDNAKAAAKIGAEMFAPVDVQDLYSFTEVKKVETGLTKEVVKE FT VNGEETKRLEPILEEVRSIKDTAEARDAASTWITETVKLKNSTLNADELSLATIARYVE FT NVGDKFKLDIASKTYLKQCATMSVPIPTTKDIKMKMVLQSPEARARRERMDVLDSVGFL FT EGLCTASGFESPFPILGLPEIAVTDGARLRKVSSNIRYLSQAHLGLVYKAPNASLHNAL FT VAVERRVFTVGKGDSAIYPPHPKYDIFSETMGYFAESIVNKVGYCKTYTPQQLALSYSA FT GKRAQYFKAIESLKKEPYQMKDSNVQAFLKKEKHWMTKAIAPRLICPRSKRYNIILGTR FT LKFNEKKIMHAIDGMFGSPTVLSGYDSFTQGRIIASKWQKFASPVAIGVDASRFDQHVS FT EQALKWEHGIYNGIFGDNELALALEHQLVNNIKMFVEDKMLTFKVRGHRMSGDINTSMG FT NKLIMCGMMHAYFKKLGVEAELCNNGDDCVIITERADEHLFGGMYDHFLKYGFNMVTET FT PVYELGELEFCQSKPVRIGGNYRMVRRPDCIGKDSNTLLSMRNQSDVKSYMSAVAQCGL FT VLNAGVPILESFYRCLYRSSGYKKVSEEYIKNVISYGTDERLQGRRTFEETPITTDNRM FT SYWESFGVDPKIQQLVERYYDNLTVSAQLQSVKVTSPHLQSILLSIPENNSHNEY" FT CDS 140..1159 FT /codon_start=1 FT /product="P1" FT /note="ORF1" FT /db_xref="GOA:B0FKR7" FT /db_xref="InterPro:IPR013674" FT /db_xref="UniProtKB/TrEMBL:B0FKR7" FT /protein_id="ABY73608.1" FT /translation="MFFEILIGASAKAVKDFISHCYSRLKSIYYSFKRWLMEISGQFKA FT HDAFVNMCFGHMADIEDYEAELAEEFAEREDEVEEARSLLKLLVAQKSKSGVTEAWNDF FT FLKSRGGVYAPLSCEPTKQELEVKSEKLERLLDEQHQFEVRAAKKYIKEKGRGFINCWN FT DSRSRLRLVKDVKDEAKDNAKAAAKIGAEMFAPVDVQDLYSFTEVKKVETGLTKEVVKE FT VNGEETKRLEPILEEVRSIKDTAEARDAASTWITETVKLKNSTLNADELSLATIARYVE FT NVGDKFKLDIASKTYLKQCATMSVPIPTTKDIKMKMVLQSPEARARRERMDVLDSVGF" FT CDS 2856..4790 FT /codon_start=1 FT /transl_except=(pos:3453..3455,aa:OTHER) FT /product="aphid transmission protein" FT /note="P3-P5 fusion created by ribosomal read-through of FT the ORF3 stop codon" FT /db_xref="GOA:B0FKR8" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:B0FKR8" FT /protein_id="ABY73612.1" FT /translation="MNSVGRRGPRRANNGTRRRRRRAIRPVVVVQPNRTGPRRRNARRA FT RGRRPNSVFGPKRGAEVFVFSVDNLKANSSGILKFGPDLSQCPAVSDGVLKSYHNYKIS FT SINVEFRTHASATTSGAMFIELDTSCKQSALSSYINSFTISKSASKSFRAAEIGGTQFQ FT ATSVNQFFLLYKANGTTTDIAGQFIIKIELHLMTAKXVDSSTPEPKPTPAPTPPPQPEP FT KPEPTPAPPPKRFFEYVGTPIGVISTRENTDSISVSKLGGQSMQYIENEKCETKTIDSF FT WSTNNNVSAQAAFVFPVPEGSYSVNISCEGLQSVDHIGGNEDGYWTGLIAYSNSSGDNW FT GVGNYKGCVFTNFLATNTWRPGHKDLKLNDCQFTDGQIVERDAVMSFHVQASGKDACFY FT IMAPKTMKTDKYNYVVSYGGYTNKRMEFGTISVTCDESDVEALRMSRHSESPTRVNNIL FT IDEGYHQTLPPIQNLGLCDVQTPGQDEVEEDDKQTVSTEPDIALQEYEAATAEIPDAEE FT DVLPSKEQLSSKPVDTSGEVTPKPPPKDNEILGVYQGQPIYADDVPPIARQKLRDAAKA FT PSTLLYDKAPKSKSFLSRFVEGNRSKTETTAPSTATTSNLTREQLREYTRIRNSLGITA FT AREYKAQFS" FT CDS 2856..3455 FT /codon_start=1 FT /product="coat protein" FT /note="ORF3; P3" FT /db_xref="GOA:B0FKM1" FT /db_xref="InterPro:IPR001517" FT /db_xref="UniProtKB/TrEMBL:B0FKM1" FT /protein_id="ABY73609.1" FT /translation="MNSVGRRGPRRANNGTRRRRRRAIRPVVVVQPNRTGPRRRNARRA FT RGRRPNSVFGPKRGAEVFVFSVDNLKANSSGILKFGPDLSQCPAVSDGVLKSYHNYKIS FT SINVEFRTHASATTSGAMFIELDTSCKQSALSSYINSFTISKSASKSFRAAEIGGTQFQ FT ATSVNQFFLLYKANGTTTDIAGQFIIKIELHLMTAK" FT CDS 2896..3357 FT /codon_start=1 FT /product="movement protein" FT /note="P4; ORF4 translated via a leaky scanning mechanism" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:B0FKS0" FT /protein_id="ABY73610.1" FT /translation="MAQEGGAVEQFGQWLWSNPIEQDPDDEMLDAQEEEGQILYLDQNA FT GLRYSYSQSTTLRPTPPGSSNSVPIYRNAQRFQTEYLSPTTITRSQVSTLSLGHTRPPL FT RRALCLLNSTPRASNQPYLATLTHSPSANQPQSPSAQRRLEGPSSRRHR" FT CDS 4924..5046 FT /codon_start=1 FT /product="P6" FT /note="ORF6; highly variable sequence" FT /db_xref="GOA:B0FKS1" FT /db_xref="InterPro:IPR009426" FT /db_xref="UniProtKB/TrEMBL:B0FKS1" FT /protein_id="ABY73611.1" FT /translation="MDDLHVIALCVLSSTILAGTALVIGCCVGCCRFIDAAYSV" XX SQ Sequence 5657 BP; 1627 A; 1364 C; 1361 G; 1305 T; 0 other; tgaagattga ccatctcaca aaagctgtta cgtgcttgta acacactaca cactcgtttt 60 gtaatcgaga agtagttgca agaacggtcc tctcattgcc tgactagctg agagccatcc 120 ttctatcccc accgccacca tgttctttga aatacttata ggagctagtg ccaaggcggt 180 caaggatttc atcagccact gctactctag actgaaatct atatattatt ctttcaaacg 240 atggctgatg gaaatatctg ggcaatttaa ggcccatgac gcctttgtca acatgtgctt 300 tgggcacatg gctgacattg aagactacga ggctgaactc gctgaagagt tcgccgagag 360 ggaggatgag gtggaagagg ccaggagcct cttgaaactg ctggtcgccc aaaaatctaa 420 atccggggtg accgaggctt ggaacgactt ctttttgaag tcgaggggtg gagtttacgc 480 accgctctct tgtgagccca ccaagcagga actggaagtc aagagcgaga agctcgagag 540 gcttctagac gaacagcacc aattcgaggt gcgagcggcc aagaaataca tcaaagaaaa 600 gggccgcggc ttcatcaact gctggaacga ctcgcgtagc cgtctcagat tggtgaagga 660 tgtcaaggat gaggcgaagg acaacgccaa agccgctgca aagattggag cggaaatgtt 720 cgcccccgtt gacgtgcagg acctctacag ctttacagag gtcaagaagg tggagaccgg 780 cctcacaaag gaggtcgtaa aagaagtgaa cggtgaagaa acaaaacgcc tcgaacccat 840 cttggaagag gtgcgatcca tcaaggacac cgccgaagct agggacgccg cctccacttg 900 gataacagag acagtcaaat tgaaaaattc aacccttaac gctgatgaac tgtctctcgc 960 caccatcgcc cgctacgttg aaaacgtagg ggacaaattc aaactcgaca ttgccagcaa 1020 gacatatcta aagcaatgcg caacgatgtc tgtaccaatt ccaaccacca aggacatcaa 1080 aatgaagatg gtgttgcaga gtcctgaagc acgtgccagg cgggaacgca tggacgtgct 1140 tgactctgtg ggtttttaga ggggctctgt accgcctctg gttttgagag cccatttcca 1200 attctcgggc tgccagagat tgcggtcaca gacggagccc ggctccgtaa ggttagtagc 1260 aatattaggt accttagcca agcccactta ggtttagtat ataaggcacc aaatgcctcc 1320 ctgcacaacg cgcttgtggc agtggagaga agagttttta cagtaggaaa gggggattct 1380 gctatctacc ccccccaccc aaaatatgac attttctcag aaacaatggg ctactttgct 1440 gagtccattg tcaacaaggt gggatactgt aaaacataca cccctcagca attggctctt 1500 agttacagtg cagggaagag ggcccagtat ttcaaagcca ttgagtcctt gaagaaggaa 1560 ccataccaaa tgaaggactc aaacgtgcag gcattcctca agaaggagaa acactggatg 1620 accaaagcca tcgcccctcg cctgatttgc ccccgctcta agcggtacaa tatcatccta 1680 ggaactcgtt tgaaattcaa cgagaagaag atcatgcatg ccattgacgg tatgtttgga 1740 tcccccactg tgctttcagg ctatgatagc ttcacccaag gcagaatcat agccagtaag 1800 tggcaaaagt ttgcatcacc cgttgctatc ggtgttgacg ctagccgctt tgaccaacat 1860 gtgtctgagc aggcgcttaa gtgggaacac gggatataca atggcatttt tggcgacaat 1920 gaattggccc ttgctctcga acatcagctt gtaaataata ttaagatgtt cgttgaggat 1980 aagatgctaa cctttaaagt taggggccat agaatgtcag gggacattaa caccagcatg 2040 ggaaacaagc tcatcatgtg tggcatgatg catgcttact ttaagaagct gggtgttgaa 2100 gcggaactct gtaacaatgg agatgattgt gtcatcataa ctgaaagggc tgatgaacac 2160 cttttcggtg gaatgtatga ccatttcctt aaatacggct tcaatatggt gacggaaacc 2220 ccggtttatg aactcgggga acttgaattt tgccaatcta aacccgtcag aattggtggc 2280 aattatagaa tggtccgtag gcccgattgc ataggaaaag atagtaacac acttttgagc 2340 atgcgcaatc aatccgacgt caaaagctac atgtcggctg tggctcagtg tggtcttgtt 2400 ttgaatgcgg gtgtacccat actcgaaagc ttctaccgct gtctatacag aagctcgggg 2460 tacaagaaag taagtgagga atacatcaaa aacgttatat catatggaac agatgaacgc 2520 cttcaaggta gacgtacctt tgaggagaca cctatcacca ctgacaatcg tatgtcatat 2580 tgggaatcat ttggagttga ccctaagatt caacaacttg tcgagaggta ctacgacaat 2640 cttacggtaa gtgcccaact ccaaagtgtg aaggtgacat ctccacatct gcaatcaatc 2700 ctcctctcca ttccggagaa caactcgcat aacgaatatt aattaccaaa tcttagccgg 2760 gtttgggata gggtttatta ctagtattcc ctgtacatta gctctcacgt actttattta 2820 caataaagtt tcagacacca ctagagaggt ggtgaatgaa ttcagtaggc cgtagaggac 2880 ctagaagagc aaacaatggc acaagaaggc ggcgccgtag agcaattcgg ccagtggttg 2940 tggtccaacc caatcgaaca ggacccagac gacgaaatgc tagacgcgca agaggaagaa 3000 ggccaaattc tgtatttgga ccaaaacgcg gggctgaggt attcgtattc tcagtcgaca 3060 accttaaggc caactcctcc gggatcctca aattcggtcc cgatctatcg caatgcccag 3120 cggtttcaga cggagtactt aagtcctacc acaattacaa gatctcaagt atcaacgttg 3180 agtttaggac acacgcgtcc gccactacgt cgggcgctat gtttattgaa ctcgacacct 3240 cgtgcaagca atcagcctta tctagctaca ttaactcatt caccatcagc aaatcagcct 3300 caaagtcctt ccgcgcagcg gagattggag ggacccagtt ccaggcgaca tcggtgaatc 3360 agttctttct tttgtacaag gcaaatggca cgacgaccga tattgcgggg cagtttatca 3420 taaaaattga gcttcactta atgactgcca aataggtaga ctcctcaaca ccggaaccta 3480 aacccacacc agctccaaca cccccccctc aacctgagcc caaaccagag cccacacctg 3540 cacctccccc taaacgcttc tttgagtatg ttggcacccc gatcggagtt atatcaactc 3600 gggaaaacac tgatagcata tctgtatcta agcttggggg tcagtcaatg cagtacatag 3660 agaacgagaa gtgtgagaca aaaaccatcg actctttctg gagcacaaac aacaacgttt 3720 cggcgcaagc cgccttcgtt tttccagtgc cagaaggatc gtacagtgtg aatatctcgt 3780 gtgaaggcct gcaatccgtt gaccacattg gtggcaacga agatggctat tggaccgggc 3840 tcatagccta ctctaattca tcaggtgaca attggggcgt gggtaactac aaagggtgtg 3900 tgtttacaaa tttcttggca acgaatacct ggcgaccagg tcacaaggat ttaaaactta 3960 acgattgcca attcacagac ggacaaatag ttgaaaggga tgcagttatg tctttccacg 4020 tgcaagcatc aggcaaggac gcctgtttct acataatggc tcccaaaaca atgaaaactg 4080 acaaatacaa ctatgttgtc tcgtatggag ggtacacgaa caaaaggatg gagttcggta 4140 ctatctccgt tacgtgtgat gaatccgatg ttgaggcact ccgtatgtcc aggcactccg 4200 agagtcccac ccgcgtaaat aacattttaa tagatgaagg ataccatcag actttgcctc 4260 ccatacaaaa tttaggactg tgtgatgtgc aaactcccgg tcaagatgag gtagaggagg 4320 atgataaaca aactgtttct actgaacctg atatagcgct gcaggaatac gaggctgcaa 4380 cagctgagat tccagacgct gaagaggatg ttttgccctc taaggaacag ctttcatcta 4440 aacctgtgga cacatccggc gaggtaactc caaaacctcc cccgaaggac aatgaaatcc 4500 ttggagtcta ccaaggtcaa cctatatacg ctgatgatgt gccacccatt gccaggcaga 4560 aacttcgaga cgctgccaaa gcaccctcca ccctgctata cgacaaggca ccaaaatcca 4620 agtcgttctt atcccgtttt gtggaaggga acaggtccaa aacagaaacc actgctccat 4680 caaccgcaac gacatctaat ttgaccaggg agcagcttcg tgaatatact agaattagaa 4740 actccttagg cattaccgcc gcaagggagt acaaggcaca attttcgtga agacaaacac 4800 cactcgcgca aatcggatcc tgggaaacag gctgaactta ggttcgtaag ctcgggtgat 4860 tgggagggtg ggctgtcaac cccacccacc caactcaccg ccgtatcgta ttgcgtgtgg 4920 ccgatggatg atcttcacgt tattgccctt tgtgtcctct cctcaaccat cctggctggt 4980 acagcgctag tgattggttg ttgcgtcggt tgttgcaggt ttatagacgc ggcttattct 5040 gtgtaagttg cgaccaaaaa tatcgaggaa gcttcggctt agtgagagga ttaacgaccc 5100 tcagcaacgg ctggtcttgg caagcctgaa taacttgcta taagacaact ggaaacccac 5160 cagtgatcaa ataaggtagc ttgcttctga gctatacact gcccccgcgc aatcggggtt 5220 aacaactata actgcccaac tcgatgaaac gagagtggag gtggcggagt gggtgactcc 5280 gtgatgtgca cccgaacgtc aggtttgaag acgttataaa acacagcgag atgagaacct 5340 cgttaaaagt ttctcggctg atacacccag tcgaccggac ctgttggcat acccttgata 5400 cgaaacaagg gcttctgaga gccactacct gtgatgcaag gtggggtaag agtcttagca 5460 acctctgtac tcggaagtgg aaataaacca tagcaatcca acagcatccc ggaagagagt 5520 tttcctcaac aggtgaaagc gtgccacggg cctgtttcaa gcaatctagc tctgcttgaa 5580 acagtatctc atagaagcaa ttctatgggg ggactggatt ctgactgccg acactcgcaa 5640 gagaagttcg gcatccc 5657 //