ID EU487030; SV 2; circular; genomic DNA; STD; VRL; 2753 BP. XX AC EU487030; XX DT 11-MAR-2008 (Rel. 95, Created) DT 01-MAY-2011 (Rel. 108, Last updated, Version 3) XX DE Tomato leaf curl Philippines virus isolate P41, complete genome. XX KW . XX OS Tomato leaf curl Philippines virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2753 RA Tsai W.S., Shih S.L., Venkatesan S.G., Aquino M.U., Green S.K., Kenyon L., RA Jan F.J.; RT "Distribution and genetic diversity of begomoviruses infecting tomato and RT pepper plants in the Philippines"; RL Ann. Appl. Biol. 158(3):275-287(2011). XX RN [2] RP 1-2753 RA Tsai W.S., Shih S.L., Venkatesan S.G., Aquino M., Huang Y.C., Green S.K., RA Jan F.-J.; RT "Molecular identification of Solanaceae- and Cucurbitaceae-infecting RT Begomoviruses in the Philippines"; RL Unpublished. XX RN [3] RP 1-2753 RA Tsai W.S., Shih S.L., Venkatesan S.G., Aquino M., Huang Y.C., Green S.K., RA Jan F.-J.; RT ; RL Submitted (13-FEB-2008) to the INSDC. RL Virology Unit, AVRDC-the World Vegetable Center, P.O. Box 42, Shanhua, RL Taina, Taiwan 74199, Republic of China XX RN [4] RC Sequence update by submitter RP 1-2753 RA Tsai W.S., Shih S.L., Venkatesan S.G., Aquino M., Huang Y.C., Green S.K., RA Jan F.-J.; RT ; RL Submitted (16-AUG-2010) to the INSDC. RL Virology Unit, AVRDC-the World Vegetable Center, P.O. Box 42, Shanhua, RL Taina, Taiwan 74199, Republic of China XX DR MD5; 588c8a6c60547cbe86c08ab25be91370. XX CC On Aug 16, 2010 this sequence version replaced gi:169639957. XX FH Key Location/Qualifiers FH FT source 1..2753 FT /organism="Tomato leaf curl Philippines virus" FT /segment="DNA-A" FT /host="tomato" FT /isolate="P41" FT /mol_type="genomic DNA" FT /country="Philippines:Benguet" FT /isolation_source="plant with yellow leaf curling symptom" FT /db_xref="taxon:96054" FT misc_feature join(2613..2753,1..141) FT /note="intergenic region" FT gene 142..486 FT /gene="V2" FT CDS 142..486 FT /codon_start=1 FT /gene="V2" FT /product="pre-coat protein" FT /db_xref="GOA:B1PR78" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:B1PR78" FT /protein_id="ACA61016.1" FT /translation="MWDPLVHPFPESLHGFRCMLAIKYLQSLQNKYSPDTVGHEFLKDF FT ICILRSKNYAEAFNRYSNVVANVYNTSEAQLRESVQSPCLCPHCPRHVVQAKVMDLQAH FT VSQAQDVQNV" FT gene 302..1078 FT /gene="V1" FT CDS 302..1078 FT /codon_start=1 FT /gene="V1" FT /product="coat protein" FT /db_xref="GOA:B0I511" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:B0I511" FT /protein_id="ACA61017.1" FT /translation="MPKRSIDTVTSLPMSITRRRLNYGSQYSLPASVPTVPDMSYKRRS FT WTYRPMFRKPKMYRMYRSRDVPRGCEGPCKVQSYEQRHDIAHVGKVICVSDVTRGNGLT FT HRVGKRFCVKSVYVLGKVWMDENIKTKNHTNTVMFFLVRDRRPYGTPQDFGQVFNMYDN FT EPSTATVKNDNRDRYQVLRKFQATVTGGQYASKEQAIVKRFMKINNHVTYNHQEAAKYD FT NHTENALLLYMACTHASNPVYATLKIRIYFYDSVQN" FT gene complement(1075..1476) FT /gene="C3" FT CDS complement(1075..1476) FT /codon_start=1 FT /gene="C3" FT /product="C3 protein" FT /db_xref="GOA:B1PR86" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:B1PR86" FT /protein_id="ACA61020.1" FT /translation="MDSRTGEPITAAQAENGVYTWTITNPLYFKISQHDKMPFLKNHDI FT ITVQIQFNHNLRKALGIHQCFLICKIWTHLHPQTWHFLRVFKYQCMKYLYSLGVISINN FT VIRAIRHVLYDVIQIIDVQISHIIKFNIY" FT gene complement(1217..1624) FT /gene="C2" FT CDS complement(1217..1624) FT /codon_start=1 FT /gene="C2" FT /product="C2 protein" FT /db_xref="GOA:B1PR81" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:B1PR81" FT /protein_id="ACA61019.1" FT /translation="MQNSSPSRGHSTQVPIKVQHKIAKRRPIRRRRIDLPCGCSYYLGI FT NCASYGFSHRGTHHCSSGREWRIYLDDNKSPLFQDIPTRQDAVLEKPRYHNSTDTVQPQ FT PEESVGNTSMFSDLQNLDSFTSSDLAFLKSI" FT gene complement(1524..2612) FT /gene="C1" FT CDS complement(1524..2612) FT /codon_start=1 FT /gene="C1" FT /product="replication-associated protein" FT /db_xref="GOA:B1PR88" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:B1PR88" FT /protein_id="ACA61018.1" FT /translation="MAPPRKFQINAKNYFLTYPKCSLTKEETLAQIKRLDTVTNKKFIK FT ICRELHEDGSPHLHVLIQFEGKYRCTNKRFFDLVSPTRSAHYHPNIQGAKSSSDVKSYI FT DKDGDTLEWGEFQIDGRSARGGQQSANDAYAKAINTGSKSEALNVIRELAPKDFVLQFH FT NLNANLDRIFAPPLEIFRCPFLSSSFDQVPKELEDWVSENVRDAAARPWRPISIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDEDKNSPLKDWALKNAEFITLTRPL FT YSGTHQSPAQNSQEETNTQAEN" FT gene complement(2165..2455) FT /gene="C4" FT CDS complement(2165..2455) FT /codon_start=1 FT /gene="C4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:B1PR89" FT /protein_id="ACA61021.1" FT /translation="MGALISMCSSSSKGNTDARIRDSSIWYPQPGQHITIQTYRELNQA FT PTSNHILIRMETPSNGVNFRSMEDLLEGVNNQPMMLTPKQLTQEVSRRLLM" XX SQ Sequence 2753 BP; 736 A; 543 C; 596 G; 878 T; 0 other; accgtgggcc gcgcaaattt tttttatatt gggcctaatg ggcctattgg atgtcggtct 60 cgaccaatgg aaaccctccc tcatcgctta acaatcatgt tgtcctctat ttatttctgc 120 tgcatcagtt ttgaactaag aatgtgggat cctctggtac atccatttcc tgaaagctta 180 cacggcttca gatgtatgct tgccatcaaa tatcttcaga gcttacagaa taaatattct 240 ccggacactg ttgggcatga gtttttgaaa gattttatat gcatattgcg aagtaagaat 300 tatgccgaag cgttcaatag atacagtaac gtcgttgcca atgtctataa cacgtcggag 360 gctcaattac gggagtcagt acagtctccc tgcctctgtc cccactgtcc cagacatgtc 420 gtacaagcga aggtcatgga cttacaggcc catgtttcgc aagcccaaga tgtacagaat 480 gtatagaagc cgtgatgttc ctcgtgggtg tgaaggccca tgtaaggtcc agtcttatga 540 acagcgtcat gatatagccc atgtgggtaa ggtcatatgt gtgtctgatg tcactcgtgg 600 taatggtctc acacaccgtg tgggaaagag gttttgtgta aagtctgtgt atgtgttggg 660 taaggtctgg atggatgaga acatcaagac taagaatcac actaacactg tcatgttttt 720 tttagttcgt gataggagac cctatgggac tccccaggat tttggtcagg tttttaacat 780 gtatgataat gagcctagta ctgcaactgt taaaaatgat aatagagatc gatatcaagt 840 tcttcgtaaa tttcaagcta ccgtgactgg aggtcagtat gcaagcaaag agcaagcaat 900 agtcaagagg ttcatgaaga ttaacaacca tgtcacttac aatcatcaag aggctgcgaa 960 gtatgataac catacagaga acgctttact gttgtatatg gcatgtaccc atgctagtaa 1020 tccagtgtat gctactttga aaatcagaat ctatttttat gattctgttc agaattaata 1080 aatattaaat tttattatat gagaaatttg tacatcgata atttgaatta catcgtatag 1140 tacatgcctt atagccctaa ttacattgtt tatgctaata actcctaagc tatacaaata 1200 cttcatacac tgatatttaa atactcttaa gaaatgccaa gtctgaggat gtaaatgagt 1260 ccagattttg cagatcagaa aacattgatg tattcccaac gctttcctca ggttgtggtt 1320 gaactgtatc tgtactgtta tgatatcgtg gtttttcaag aacggcatct tgtcgtgttg 1380 ggatatcttg aaataaaggg gatttgttat cgtccaggta tatacgccat tctctgcctg 1440 agctgcagtg atgggttccc ctgtgcgaga atccatacga agcgcaatta attcccagat 1500 agtaagagca gccgcaagga agatcaattc tccgcctgcg tattggtctc ctcttggcta 1560 ttttgtgctg gactttgatg ggtacctgag tagagtggcc tcgtgagggt gatgaattct 1620 gcatttttta gtgcccagtc tttgagtgga gaatttttat cctcatccaa gtactcttta 1680 tacgacgacg taggtcctgg attgcatagg aagattgttg ggattccacc tttaatttga 1740 attggtttcc cgtacttcgt gttgctttgc cagtctcttt gggcccccat aaactcttta 1800 aaatgcttta ggtagtgggg gtctacgtca tcaatgacgt tataccaagc atcattactg 1860 tagacctttg gactcaggtc cagatgtcca cataaatagt tatgtggtcc cagagatcta 1920 gcccacatcg tcttccccgt tcgactatcg ccctctatga caatacttat gggtctccat 1980 ggccgcgcag cggcatcccg aacattctcg gaaacccagt cttcaagttc ttttggaact 2040 tggtcgaaag aagaagaaag aaaaggacaa cgaaaaatct ctaaaggagg tgcaaagatc 2100 ctatctaaat tggcatttaa attatgaaat tgtaaaacaa aatcttttgg agctaactcc 2160 ctaattacat taagagcctc cgacttactt cctgtgttaa ttgctttggc gtaagcatca 2220 ttggctgatt gttgaccccc tctagcagat cttccatcga tctgaaattc accccattcg 2280 agggtgtctc catccttatc aatatatgat ttgacgtcgg agcttgattt agctccctgt 2340 atgtttggat ggtaatgtgc tgacctggtt ggggatacca gatcgaagaa tctcttattc 2400 gtgcatctgt atttcccttc gaactggatg agcacatgga gatgagggct cccatcttcg 2460 tgcagttctc tgcagatttt gatgaatttc ttgtttgtta cagtatctag tctttttatt 2520 tgggcaaggg tttcctcttt agtaagagag catttgggat atgtaagaaa ataatttttg 2580 gcatttattt ggaattttct gggtggtgcc atttgactca gtcaatgggt accaattgag 2640 aggatttcat tctactcagg gtatcggtac attggtaccc atatatactt ggttacctaa 2700 tggcataatt gtaatttttt atgggcttct aagcggccca cgactataat att 2753 //