ID FJ666328; SV 1; linear; genomic RNA; STD; VRL; 3761 BP. XX AC FJ666328; XX DT 14-JUL-2009 (Rel. 101, Created) DT 14-JUL-2009 (Rel. 101, Last updated, Version 1) XX DE Tobacco necrosis virus D isolate TNV-DP, complete genome. XX KW . XX OS Tobacco necrosis virus D OC Viruses; Riboviria; Tombusviridae; Procedovirinae; Betanecrovirus. XX RN [1] RP 1-3761 RX DOI; 10.1007/s00705-009-0414-9. RX PUBMED; 19506797. RA Cardoso J.M., Felix M.R., Clara M.I., Oliveira S.; RT "Complete genome sequence of a Tobacco necrosis virus D isolate from olive RT trees"; RL Arch. Virol. 154(7):1169-1172(2009). XX RN [2] RP 1-3761 RA Cardoso J.M.S., Felix M.R., Clara M.I., Oliveira S.; RT ; RL Submitted (28-JAN-2009) to the INSDC. RL Biology, University of Evora, Evora 7002-554, Potugal XX DR MD5; 12372b98e9944f42ee58ff80e17b9250. XX FH Key Location/Qualifiers FH FT source 1..3761 FT /organism="Tobacco necrosis virus D" FT /host="Olea europaea L." FT /isolate="TNV-DP" FT /mol_type="genomic RNA" FT /country="Portugal" FT /collection_date="1998" FT /db_xref="taxon:12056" FT CDS 39..2216 FT /codon_start=1 FT /transl_except=(pos:645..647,aa:OTHER) FT /product="p82" FT /note="RNA-dependent RNA polymerase; RdRp; read-through FT stop codon" FT /db_xref="GOA:C7AXL5" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013707" FT /db_xref="UniProtKB/TrEMBL:C7AXL5" FT /protein_id="ACT31460.1" FT /translation="MESLPIVLLSLISKTVELICSLLTLIIQNSTAVTWGLVCVWLAYV FT SLRFLFQVKITVHPAARETFESMVRKFQAESMFSEEAIPCVVSVGDKDADLTLDPQRED FT IKIVKSSRRVSYAVRVAHVAKAQVGLLTNSRANELVYSRLCREEMVKHGVRPSHIAHMV FT PLAVAACFIPLDSDFLAASIRQGEGMRERRALLGPSWEKXGGLLVTSGFTTPTWRGDPR FT GMLVTKGPPLAKPRKLYRFTGMGTHIRYGVHDHSLGNVRRGLVERLYMVEVKGELQPTP FT KPIPGAFNQMSRFSDRLSIHLPKTTRLTPKEFLGFYTGRKLERYQKAVESLEMHPVREK FT DAWLSTFVKAEKLNITAKPDPAPRVIQPRDPRYNVEVGRFLRHSEEMLFKAINKTFGGR FT TIFKGLSSDQAGEEFKALWDSFKDPVGIGMDASRFDQHISKDALEFEHKMWLSMFPKSE FT RAELARLLSWQINNRGLARCPDGEIRYRVEGCRMSGDMNTSSGNCYIMCATVHNWCDNI FT KHIKHFRLANNGDDCMLVVERSDEEKVRNGLIEYYATLGFTMKVEPTVDVLERLEFCQT FT RPVLVDGKYRMVRNLHQSMSKDLHSLHDLDSIAARNAWVTAVGTGGRCMNDGVPVLKEF FT FKQFPDYNLEAKKGSDMAQKLRDDWKYKFNRTAAFQDLKPTQESRYSFWLAFGLLPDEQ FT IALEDGFSPLKMEIVNEQIQEEVSLLQFSGA" FT CDS 39..647 FT /codon_start=1 FT /product="p22" FT /db_xref="GOA:C7AXL6" FT /db_xref="InterPro:IPR013707" FT /db_xref="UniProtKB/TrEMBL:C7AXL6" FT /protein_id="ACT31459.1" FT /translation="MESLPIVLLSLISKTVELICSLLTLIIQNSTAVTWGLVCVWLAYV FT SLRFLFQVKITVHPAARETFESMVRKFQAESMFSEEAIPCVVSVGDKDADLTLDPQRED FT IKIVKSSRRVSYAVRVAHVAKAQVGLLTNSRANELVYSRLCREEMVKHGVRPSHIAHMV FT PLAVAACFIPLDSDFLAASIRQGEGMRERRALLGPSWEK" FT CDS 2213..2401 FT /codon_start=1 FT /product="p71" FT /db_xref="UniProtKB/TrEMBL:C7AXL7" FT /protein_id="ACT31461.1" FT /translation="MKTHQFHLKIESRWKTQKMSVVGGTNESIVRKGSRRVAIRKLAKL FT PCAGKVMLSRTWVLQFQ" FT CDS 2251..2448 FT /codon_start=1 FT /product="p7a" FT /db_xref="InterPro:IPR035284" FT /db_xref="UniProtKB/TrEMBL:C7AXL8" FT /protein_id="ACT31462.1" FT /translation="MENTENVRSGRNQREYSKERQQEGGYKEVSKAAVRREGDVKQDMG FT PSVSMTVVGEKVEFTQHFHF" FT CDS 2448..2648 FT /codon_start=1 FT /product="p7b" FT /db_xref="GOA:C7AXL9" FT /db_xref="UniProtKB/TrEMBL:C7AXL9" FT /protein_id="ACT31463.1" FT /translation="MAYIIVHQRDPFPLLGAWIIVIIIVAVIGLLNQSSPERPYQTFKE FT DNSKIQYITIGGSTTTKVSTS" FT CDS 2650..3456 FT /codon_start=1 FT /product="p29" FT /note="coat protein; CP" FT /db_xref="GOA:C7AXM0" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:C7AXM0" FT /protein_id="ACT31464.1" FT /translation="MPKRGRVGLAESFQSKTKKQKENEYNAFQREKMERALANNARAAS FT KGSGMTFRPLTVPVAGSVIYSRPRVPQVRTNQMSTLVVNTELVANITLAAAGAFSFTTQ FT PLIPSFGSWLANIASLYSKWRWISCSVVYIPKCPTSTQGSVVMAIVYDAQDTVPTTRTQ FT VSQCYQSITFPPYAGYGGASALNHKGSGGESLVSTLDTNRVDKRWYSTIGNAAFTALTS FT LDKNQFCPATAIIAGDGGPAAATAVGDIFMRYEIEFIEPVNPTIKI" XX SQ Sequence 3761 BP; 1029 A; 791 C; 955 G; 986 T; 0 other; gatacctaac cagtatctca gtgattaagt aatcagctat ggagtcctta ccaattgtcc 60 ttttatccct tatttccaag acagttgagc tcatctgtag tttgttaacc ctaataatcc 120 aaaattccac agcagtgaca tggggcctag tgtgcgtatg gctggcatac gtttcgctca 180 ggttcttatt ccaagttaaa atcacagtcc accccgcagc ccgcgagaca tttgaaagca 240 tggtgcgtaa gttccaagct gagtctatgt ttagtgagga agccatacct tgcgtagtta 300 gcgtaggtga caaggacgca gatctcaccc tcgatccaca aagagaggat ataaaaattg 360 tgaagtcttc gagaagagtg agttatgcag tccgtgttgc ccatgttgcc aaagctcagg 420 tagggttact caccaacagc agagccaatg aattggtcta cagccggttg tgcagggaag 480 agatggttaa acatggagtg agacccagcc atatagcaca catggtgcca cttgctgtag 540 ctgcatgctt catccctctg gatagtgact ttttagccgc ttctattaga cagggtgaag 600 gcatgaggga gcggagggcc cttttagggc cctcatggga gaaataggga ggcctattgg 660 tcacaagcgg attcactaca cctacatggc gtggtgatcc gaggggtatg cttgtgacca 720 aaggacctcc cctcgcgaaa ccccgtaaat tgtaccgatt tactgggatg ggaacacata 780 ttcggtacgg agtgcacgac cactcattgg gcaatgttcg gcggggacta gtggaaagat 840 tatatatggt tgaagttaaa ggagaacttc aacctactcc aaagcccatc cccggagcgt 900 tcaaccagat gtcccggttc agtgaccgac tgagtatcca tctacctaag accacccgct 960 tgacacccaa ggaatttctt gggttttata cgggtcgcaa gttggaaaga taccagaagg 1020 cagttgagtc gttagagatg catcccgtga gggagaagga tgcctggctt agtacgttcg 1080 tgaaggctga aaaattgaat atcacagcca aacccgaccc cgctccacgg gtgatacaac 1140 ctagagatcc taggtataat gtggaggtgg ggcgcttttt gcgacacagt gaggaaatgt 1200 tgttcaaggc cattaataag acatttggcg gaaggactat tttcaagggc ctcagttctg 1260 atcaagctgg ggaggagttt aaagcactct gggattcttt caaggatcca gtcggcattg 1320 gtatggatgc ttctagattt gaccagcaca tatctaaaga tgctcttgag tttgagcaca 1380 agatgtggct cagcatgttc cctaaaagtg agcgtgctga gttggctcga ttgttgagtt 1440 ggcagatcaa taatagaggc ctagcccggt gtccggatgg ggagattaga tacagagtgg 1500 aagggtgtag aatgtctggg gacatgaata cctctagcgg gaattgttac attatgtgtg 1560 caacagtgca taactggtgt gacaatatta aacatatcaa gcatttcaga cttgccaata 1620 atggtgatga ttgtatgctg gttgttgaac gcagtgatga ggagaaagtc cgcaatgggc 1680 taattgagta ctatgcaaca cttggattca caatgaaggt tgagcctaca gtggatgtat 1740 tggaaaggtt agaattttgc cagacaagac ctgttttagt ggatggcaag taccggatgg 1800 tgcgaaacct tcatcagagc atgtctaaag atctacactc attgcatgac cttgatagta 1860 ttgcagcgcg taacgcatgg gttacagccg ttggaactgg aggaaggtgt atgaatgatg 1920 gggtgcctgt tcttaaagaa tttttcaaac agtttccaga ttataatttg gaggccaaga 1980 aaggttctga tatggcacaa aaattgagag atgattggaa gtacaagttc aataggactg 2040 ctgcttttca ggatctcaaa cctactcagg aatcacgtta ctccttttgg ttggcgttcg 2100 ggttgctacc tgatgaacaa atcgccctgg aagatggctt ctccccttta aagatggaga 2160 tagttaatga gcagatccag gaggaggtgt ccctcctcca gttttctggg gcatgaaaac 2220 tcaccaattt caccttaaga tcgagtctag atggaaaaca cagaaaatgt ccgtagtggg 2280 aggaaccaac gagagtatag taaggaaagg cagcaggagg gtggctataa ggaagttagc 2340 aaagctgccg tgcgcaggga aggtgatgtt aagcaggaca tgggtccttc agtttcaatg 2400 acggtggtgg gtgaaaaagt tgaattcacc caacattttc atttttaatg gcctacatca 2460 ttgttcatca acgtgaccca ttcccccttt taggggcttg gatcatcgtt atcatcattg 2520 tcgcagttat tggtttatta aaccaaagct ctcctgaaag accttaccaa actttcaaag 2580 aagataattc taagattcaa tacattacaa tcggaggatc aaccactaca aaagtgtcta 2640 ctagttaata tgcctaagcg aggaagagtt ggattggctg aatcttttca gtccaagaca 2700 aagaagcaga aggagaatga atacaacgcg tttcaaagag agaagatgga acgagctctg 2760 gcgaacaatg cccgcgcagc atcaaagggt tctgggatga cttttcgtcc cttgactgtt 2820 ccggttgctg ggtctgttat ttatagcagg ccacgcgtgc cgcaggttcg caccaaccag 2880 atgtccaccc ttgtggtcaa tactgagttg gttgccaaca ttactttggc agctgcagga 2940 gcgtttagtt tcacaacaca accgttgatt cctagttttg ggtcctggtt agcaaacatc 3000 gcgagtctct attccaaatg gagatggata tcgtgttctg tcgtgtacat accaaaatgc 3060 cccacttcta ctcaagggag tgtggttatg gcgatagtat acgatgcaca agatactgtt 3120 ccaactacgc ggacacaagt ttcacaatgc taccaatcca ttacattccc tccatatgct 3180 ggatatggag gagcctctgc actgaaccat aagggttctg gtggtgaatc attggtgtcc 3240 actttggaca ccaatagagt ggataaacga tggtacagca ccatcggtaa cgctgctttt 3300 actgctctta catcacttga caagaaccag ttctgtcctg ccacagctat aattgctgga 3360 gatggaggac ctgctgctgc cactgctgtc ggagacatct ttatgcgcta cgagatcgag 3420 ttcattgaac cggtcaatcc caccatcaaa atttaattgc tttcatagac ccgtcttccg 3480 ggagacgtta agaagatgcc cgtggaaaat agtaggtaga gttgtggcgt gacaacccac 3540 aactgcatct ctttgcttat ctagttacaa tatatgttga cgtacaagaa ggatcctggg 3600 aaacaggttc aacgggctca ctgtggtggt gagccgtcgc atcacttgta tgtgctccaa 3660 tattggttgt cgataagcgt cctgacatgg ctccatgcaa cagcatgggg gggtccagag 3720 tcagtcccct ctttatttac ctagagattc ctctaggaat t 3761 //