ID FJ940224; SV 1; linear; genomic RNA; STD; VRL; 6414 BP. XX AC FJ940224; XX DT 26-MAY-2009 (Rel. 100, Created) DT 26-MAY-2009 (Rel. 100, Last updated, Version 1) XX DE Pepino mosaic virus strain DB1, complete genome. XX KW . XX OS Pepino mosaic virus OC Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus. XX RN [1] RP 1-6414 RA Van der Vlugt R.A.A., Van Raaij H.M.G., Dullemans A.M.; RT ; RL Submitted (16-APR-2009) to the INSDC. RL Biointeractions & Plant Health, Plant Research International, RL Droevendaalsesteeg 1, Wageningen, Gelderland 6708 PB, The Netherlands XX DR MD5; 91fb399708630656ada782a206767cce. DR EuropePMC; PMC3132167; 21702943. DR EuropePMC; PMC3356388; 22623984. XX FH Key Location/Qualifiers FH FT source 1..6414 FT /organism="Pepino mosaic virus" FT /host="tomato" FT /strain="DB1" FT /mol_type="genomic RNA" FT /country="Netherlands" FT /collection_date="2002" FT /note="necrotic isolate of EU-tomato strain acronym: PepMV" FT /db_xref="taxon:112229" FT 5'UTR 1..86 FT CDS 87..4406 FT /codon_start=1 FT /product="polymerase protein" FT /db_xref="GOA:C4PFK7" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:C4PFK7" FT /protein_id="ACR24268.1" FT /translation="MSRVRNTLEKIRDPQVQSSICEAAYQHVRPVLKESLINCPYALND FT YEADTLENLGVTINPHAIQTHTHAAAKVVENRMLEIVGHHLPKDEKVTFIFLKRSKLRY FT MRRAAVHKDVFVNHNIEPKDFFRYDEESTSTSFSVDTRIAYISDSLHFMEPADVTHLFD FT RCQNLKTLMATVVLPVEAIHRQTSLFPAIYSINYNEEGFEYIPGSHGGGAYFHKYETLE FT WLKYSRFIGHDPLTGLKYTITIQMVESLGANHLFLFQRGNFETPLYRTFQKNSFVTFPN FT IFHPRHVNATKPMPRSRAIQLYLYVKSVNKVTQRDIFAKVRQLISTAELELYDPDELTH FT VVNYFTYVSQLSSINDYDNMLKSSFFKKLVAPMQHDWRCMIEFFRGKSDFNQLLTALQW FT KDFSYTIKTEELVITTHTAIGQAISNAATTYKERKQLTQLVKKGTISLADFEQREPEIT FT YTEFEPETRPQVDCVTNYNNAVKNLGLSELDEQPQCSSSNSHIPCNEISLAMTDDDNAA FT AIHEIESLLSEPIIAPQLPGLPHKTWASYASDTSSMKNREIENIIAELEISRKENNVQQ FT TTHDYHAVSDTAQSSGDLPWKAWIPLLNAHGFKGDQLQYSPDGKVIQPIQDINNKTPRS FT EYPSSIPADLVNTLRNIKRAVYAIPISHRRASAYSSDIKNNRTGKLLCSQSKEWKESFA FT FKMQHEDIVKSGVVIHGCGGSGKSQALQNFLRTLGDSNDCCTVVVPTVELRNDWVNKLC FT KLPMEHIKTFEKAMIQPGFPVVIFDDYTKLPPGYIEAYLFHHANTELFILTGDSRQSVY FT HESNNEAYIASLDEAVAYYANYCGFYLNATHRNVRSLANKLGVYSEKEGHLKITFASNA FT LQKCKVPILVPSQMKKSAMQDIGHKAMTYAGCQGLTAPRVQILLDNHTQHCSDRVLYTC FT LSRAVDSIHFINTGPNNSEFWDKLEATPYLKAFIDTYRDEKTEMLNSKPADDSPAEPEA FT PLTHFPVSNGNNLEKLASALPEKFARELYDKHHGYSNTIQTENPVVQLFQHQQAKDETL FT FWATIEARLSITTPEANLREFVLKKDVGDILFFNYHNVMCLPADPVDFEPRTWEICAAE FT VKNTYLAKPMANLINAASRQSPDFDANKISLFLKSQWVKKVEKLGAVKSKPGQTIAAFM FT QQTVMLYGTMARYLRKMRQRFQPKHIFINCETTTDNLNQFVKQGWNFNRTAQTNDFTAF FT DQSQDGAMLQFEVMKAKFFNIPADIIEGYINIKLNAKIFLGTLSIMRLSGEGPTFDANT FT ECSIAYTATRYHLDSTVKQVYAGDDMALDGVVQEKPSFKKLQNKLKLTSKTLFPKQVKG FT DYAEFCGWTFTPGGIIKNPLKMHASIMLQEAIGNLHTAARSYAIDMKHSYQMGDELHNY FT LTPDEAEQHFLAVRKLHKLHQGEAMRLGEKSPPKATH" FT CDS 4432..5136 FT /codon_start=1 FT /product="TGB1 protein" FT /db_xref="GOA:C4PFK8" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:C4PFK8" FT /protein_id="ACR24269.1" FT /translation="MERSTLINLLQLHHFESKLSVEGIIVVHGIAGTGKTTLLRTLFSA FT YPSLVIGSPRPCYLDKQNKISQVCLSCFPNTHCDIVDEYHLLESFPEPKLAIFGDPCQC FT TYIERLRVPHYTSFRTHRFGKSTAEILNKLFDFNIVSVKKEDDIVEFFNPFEVDPTEHI FT SASEEEVLDFVSDQVVTTSSEELAGLEFSETTFYCTTLAAAVAENPAKTFISLTRHTHK FT LTIGELNARSNS" FT CDS 5117..5488 FT /codon_start=1 FT /product="TBG2 protein" FT /db_xref="GOA:Q3BLC2" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:Q3BLC2" FT /protein_id="ACR24270.1" FT /translation="MPGLTPRADLTDTYKIIAIAFLLSACIYFQNSHYQPVAGDNLHRL FT PFGGQYQDGTKKISYFPQQQSYFHSGNKLNVLILIFILTLGIVLTNKFSFSFSRTTHQH FT SCYNTHSSTNNTQPLSGHH" FT CDS 5340..5594 FT /codon_start=1 FT /product="TGB3 protein" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/TrEMBL:C4PFL0" FT /protein_id="ACR24271.1" FT /translation="MSSYLSSFSHWVLSSPINLVLALVVLLTSILAITHIHQPTIHNHC FT QVIIDGAAIVITNCENTPEVLEAINFSPWNGLSFPKFEN" FT CDS 5632..6345 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:Q2UVJ6" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/TrEMBL:Q2UVJ6" FT /protein_id="ACR24272.1" FT /translation="MTDTTPVAATSSAPPTAKDAGAKAPSDFSNPNTAPSLSDLKKVKY FT VSTVTSVATPAEIEALGKIFTAMGLAANETGPAMWDLARAYADVQSSKSAQLIGATPSN FT PALSRRALAAQFDRINITPRQFCMYFAKVVWNILLDSNIPPANWAKLGYQEDTKFAAFD FT FFDGVTNPASLQPADGLIRQPNEKELAAHSVAKYGALARQKISTGNYITTLGEVTRGHM FT GGANTMYAIDAPPEL" FT 3'UTR 6346..6409 FT polyA_site 6410 XX SQ Sequence 6414 BP; 2061 A; 1463 C; 1174 G; 1716 T; 0 other; gaaaacaaaa caaataaaca aatatacaaa gttaaactaa cacaacataa ccacgtggaa 60 aaacagcgaa agcactttac cacattatgt ctcgtgtcag aaatactttg gaaaagatca 120 gagacccaca agtacagtcc agcatttgtg aagctgccta tcaacatgtt cgacctgtac 180 ttaaagaatc tctaatcaat tgtccttacg cgcttaatga ttatgaagca gacacccttg 240 agaatcttgg tgtcacaatt aacccccatg caatccaaac acacacacat gccgcagcca 300 aagtagtcga aaatcgtatg cttgaaattg ttggacatca cttgcctaaa gatgaaaaag 360 taactttcat cttcctcaaa cgtagcaagt tgcgttacat gagaagggct gctgtgcata 420 aagatgtctt tgtcaatcat aacattgaac caaaagactt cttcaggtat gatgaagagt 480 ctacatcaac cagcttttcc gttgatacga gaatcgcata catttcagat tctctacact 540 ttatggaacc tgctgatgtg actcacttgt ttgaccgttg ccaaaacctt aaaacattga 600 tggcaactgt tgtactacct gtggaagcta tacacagaca gacatctcta ttccctgcga 660 tttactccat taactacaat gaagaaggct ttgagtatat cccaggatca cacggtggtg 720 gggcatattt ccacaaatat gaaaccctag aatggctcaa atactctaga ttcattggac 780 atgatccatt gactggttta aaatacacca ttacgattca aatggtggag agtcttggtg 840 ccaaccacct tttcctcttc caaagaggaa actttgagac gccgctatac aggacgtttc 900 aaaagaatag ttttgtgaca ttcccaaata tattccatcc ccgacacgtc aatgccacaa 960 aacctatgcc tagatcaagg gccatacagc tgtacttata tgtgaaatca gtaaataaag 1020 ttacgcaaag agatatattt gccaaggtta gacaactgat ttccactgct gagctagaat 1080 tgtatgaccc tgatgaactc acgcatgttg taaattattt cacatatgtg tcacaactgt 1140 catctatcaa tgattatgac aacatgctca aatccagttt cttcaaaaaa ctggttgcac 1200 ccatgcaaca cgactggagg tgcatgattg aattcttccg gggaaagagt gacttcaatc 1260 aactgctcac agctcttcaa tggaaagatt tttcctatac tattaagact gaagagcttg 1320 taattactac acacactgct ataggacaag caataagcaa tgcagctacc acatataaag 1380 aaagaaagca gctgactcaa ttggtcaaaa aaggtacaat atccttagca gattttgaac 1440 agagagaacc tgaaataact tacactgagt ttgagcctga aactaggccc caagtggact 1500 gcgttactaa ttataataat gcagttaaaa atttaggtct ttccgaactt gatgaacagc 1560 cccaatgttc atcttctaac agtcatatac cctgcaatga aatatcctta gcaatgactg 1620 atgacgacaa tgctgcggcc attcatgaaa ttgaatctct attgtctgaa ccgataatag 1680 ctcctcaact cccaggattg ccacacaaga catgggccag ttatgcttca gacacttcat 1740 ccatgaagaa ccgtgagatt gagaacataa ttgctgagct tgaaatctca cggaaggaaa 1800 ataatgtgca acaaactact catgattacc atgcagtttc tgacacagct cagagctccg 1860 gagatctccc atggaaagca tggattccac ttctgaatgc acacggcttc aagggtgacc 1920 aacttcaata cagtccggat ggcaaagtga ttcaaccaat ccaggacatc aacaacaaaa 1980 caccaagatc tgagtaccca tccagcattc ctgcagatct tgtgaataca ctgcgaaaca 2040 ttaaaagagc agtgtatgcc attcctatta gccatcgaag ggcaagtgct tacagctctg 2100 atatcaaaaa caataggacc ggtaaattac tctgttccca atcaaaagaa tggaaggaaa 2160 gttttgcttt caaaatgcaa catgaagaca tcgttaaatc tggagtagtc attcatggct 2220 gtggcggctc tggaaaatca caagcattac aaaactttct cagaactctt ggcgactcta 2280 atgactgctg cacagtggtt gtgccaactg ttgaactcag aaatgattgg gtgaacaaat 2340 tgtgtaagct acccatggaa cacattaaaa catttgaaaa agcaatgatt caaccaggat 2400 tcccagttgt tatctttgat gattacacta aattgccacc tggttacatt gaggcctatt 2460 tgttccacca tgccaacact gaacttttca ttcttactgg agactcgcgg caaagtgtat 2520 atcatgagtc caacaatgaa gcatacattg cctcattaga tgaagccgtc gcttattatg 2580 ctaactactg tggattttac ctaaatgcta cacacagaaa tgttcgcagt ttggccaata 2640 agctaggtgt ttacagtgag aaagaaggtc acctcaaaat tacctttgcc tcaaatgctc 2700 tacaaaagtg caaagtgcca attttggtgc cctctcaaat gaagaagagt gctatgcaag 2760 acatagggca caaagccatg acctacgctg ggtgtcaagg gcttactgca ccgagagtcc 2820 aaattttgct tgacaaccac acacaacact gctcagacag ggtgctgtac acttgtctct 2880 ccagagctgt ggattccatc cactttatca atacaggccc aaacaattct gaattttggg 2940 acaagcttga ggcaacacca tacctcaaag catttattga tacttacaga gatgagaaaa 3000 cagaaatgct caattctaag cctgctgatg acagtcccgc cgagcctgaa gctccattga 3060 ctcactttcc agtgtcaaac ggcaataact tggaaaagtt agcttcggcg cttcctgaaa 3120 aatttgcgag agagttatat gataaacacc atggatattc taatacaatc caaactgaaa 3180 atccagtggt gcaacttttc cagcatcaac aagccaaaga tgaaacactt ttctgggcaa 3240 caatagaagc tagactttct attacaactc cggaagccaa cttacgagaa tttgtgctaa 3300 agaaagatgt tggagatatc ttgtttttca attaccacaa tgtcatgtgc ttacctgctg 3360 acccagtgga tttcgagcca agaacatggg aaatatgtgc tgctgaagtt aaaaatacat 3420 atttagccaa accaatggct aacttgatca atgctgctag cagacaatct cctgatttcg 3480 acgctaacaa aatttccctg ttcctaaaat ctcaatgggt caagaaagta gaaaaattag 3540 gtgctgtcaa gtcaaagcct ggccagacca ttgcagcttt catgcaacaa acagtgatgt 3600 tgtatgggac tatggccaga tacctcagaa agatgagaca aagatttcaa ccaaaacata 3660 ttttcatcaa ttgtgaaaca acaactgata atctgaacca atttgttaaa caaggttgga 3720 actttaacag aacagctcag acaaatgatt tcacagcttt tgaccaatca caagatggtg 3780 caatgcttca atttgaagtc atgaaagcaa aattcttcaa tatccctgca gacatcattg 3840 aaggatacat caacatcaaa ttgaacgcca aaattttcct tggcacattg tccattatga 3900 ggttgtctgg tgaaggtcca acttttgatg ccaacacaga atgttcaata gcatacactg 3960 ctacaagata ccatcttgat tctacagtca agcaggttta tgctggcgat gatatggcat 4020 tagatggagt tgtccaagaa aaaccctctt tcaaaaaact acagaacaag cttaaactca 4080 cctcaaagac actatttcca aaacaggtta aaggtgatta tgctgaattc tgtggttgga 4140 ctttcactcc tggtggtatc attaaaaacc ctttgaaaat gcatgcttcc attatgttgc 4200 aagaggcaat cggcaattta cacactgctg ccagatcata tgctattgac atgaagcatt 4260 cataccaaat gggtgatgag ctgcacaatt acttaacacc agatgaagct gaacaacact 4320 tccttgctgt tcggaagttg cacaagttac accaaggaga agcaatgaga cttggtgaaa 4380 agagccctcc aaaagcaaca cattgagggg ttaagttttc cccagtttga aatggaaaga 4440 tcaactctga ttaatttact tcaactgcac cacttcgagt caaaactcag tgttgaagga 4500 atcatagttg tgcacggaat tgcaggcact gggaaaacca ctttacttag gactttattt 4560 tctgcttacc ctagcttagt tataggttca cctaggcctt gctatttaga taaacaaaac 4620 aaaatttcac aagtttgctt atcttgcttt cccaataccc attgtgatat tgtcgatgag 4680 tatcatttgc tagaaagttt tccagaacca aaattggcta tctttggtga cccttgtcaa 4740 tgcacataca ttgagagact tagagtccca cattacactt ccttcagaac tcatagattt 4800 ggaaagtcaa ctgctgagat tttgaacaaa ctgtttgact ttaatatagt ctcagttaag 4860 aaagaagacg acatcgttga attctttaac ccttttgaag tggaccccac tgagcatatc 4920 tctgcctctg aagaagaagt cttggacttt gtctctgacc aagtggtgac cactagctca 4980 gaggaactag caggacttga gttttcagaa acaactttct actgcacaac attggccgca 5040 gctgttgctg aaaatcctgc taagactttc atctctctga ctagacacac ccacaaactc 5100 accattgggg aactaaatgc caggtctaac tcctagagct gacctcactg acacatacaa 5160 aatcattgcc attgctttct tgttgtcagc ttgcatttac ttccaaaata gccactacca 5220 acctgttgct ggagacaact tgcatcgttt gccttttggt ggccaatatc aagacggcac 5280 caaaaagata tcttattttc cacaacagca gtcatacttt cattctggaa acaaattaaa 5340 tgtcctcata cttatcttca ttctcacatt gggtattgtc ctcaccaata aatttagttt 5400 tagctttagt cgtactactc accagcattc ttgctataac acacattcat caaccaacaa 5460 tacacaacca ttgtcaggtc atcattgacg gtgctgcaat agtcataaca aattgtgaga 5520 acacaccaga agtgcttgaa gcaatcaact tctccccttg gaacgggtta agttttccta 5580 aatttgaaaa ttaatattga gtgttcacaa aatcaacttc aataaacaat catgactgac 5640 acaacacctg ttgctgccac ttcaagtgcc ccacccacag ccaaagatgc tggtgccaaa 5700 gctccttctg acttctcaaa tcccaataca gctcctagtc tcagtgattt gaagaaagtc 5760 aagtacgtct ccaccgtgac ctccgtggcc acaccagctg aaattgaagc cctaggcaaa 5820 atcttcaccg ctatgggcct tgccgccaat gagactggtc cggccatgtg ggatctagct 5880 cgtgcatatg ctgatgtgca gagttctaaa tcggcacagc tgattggagc taccccctcc 5940 aaccctgcac tatcacgccg agcccttgct gctcagtttg atcgaatcaa cataaccccc 6000 aggcaatttt gcatgtactt tgccaaagtt gtttggaaca tacttctcga cagcaacatt 6060 ccaccagcaa attgggccaa acttggttac caagaagata caaaatttgc tgcatttgac 6120 ttcttcgatg gagtcaccaa ccctgccagc ctgcagcctg ctgatggtct tatcaggcag 6180 ccaaatgaga aagaactagc tgctcactcc gtagctaagt acggcgcctt ggctaggcaa 6240 aagatctcca caggtaatta tattaccaca cttggagaag tcacacgtgg acacatggga 6300 ggagctaaca ccatgtacgc gatagacgca ccccctgaac tttaaacact cgaaacttaa 6360 tcagagtggg gttttctaca gtttattttc ctaattattt ctttgaaata aaaa 6414 //