ID FM955602; SV 1; circular; genomic DNA; STD; VRL; 2756 BP. XX AC FM955602; XX DT 07-JAN-2010 (Rel. 103, Created) DT 20-JUN-2013 (Rel. 117, Last updated, Version 2) XX DE Papaya leaf curl virus av2 gene, av1 gene, ac5 gene, ac3- truncated gene, DE ac2 gene, ac1 gene and ac4- truncated gene, clone MI68 XX KW complete genome. XX OS Papaya leaf curl virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2756 RA Ilyas M.; RT ; RL Submitted (26-DEC-2008) to the INSDC. RL Ilyas M., Plant Biotechnology, NIBGE, P.O Box. 577, Jhang Road Faisalabad, RL 38000, PAKISTAN. XX RN [2] RX DOI; 10.1099/vir.0.020404-0. RX PUBMED; 20375225. RA Ilyas M., Qazi J., Mansoor S., Briddon R.W.; RT "Genetic diversity and phylogeography of begomoviruses infecting legumes in RT Pakistan"; RL J. Gen. Virol. 91(Pt 8):2091-2101(2010). XX DR MD5; f94e69018ca406e948a0780f6a7230e1. XX FH Key Location/Qualifiers FH FT source 1..2756 FT /organism="Papaya leaf curl virus" FT /host="Rhynchosia capitata" FT /mol_type="genomic DNA" FT /country="Pakistan:Kundian, Mianwali" FT /isolation_source="leaf of Rhynchosia capitata" FT /collected_by="Muhammad Ilyas" FT /clone="MI68" FT /db_xref="taxon:53260" FT CDS 148..504 FT /transl_table=1 FT /gene="av2" FT /product="pre-coat protein" FT /db_xref="GOA:D2T128" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:D2T128" FT /protein_id="CAW31017.1" FT /translation="MWDPLLNEFPETVHGFRCMLAVKYLQLVENTYSPDTLGYDLIRDL FT ISVIRARNYVEATSRYNHFHARFEGTPPSQLRQSIREPCCCPHCPRHQSKSMGEQAHEQ FT KAQDVQDVQKSRCS" FT CDS 308..1078 FT /transl_table=1 FT /gene="av1" FT /product="coat protein" FT /db_xref="GOA:D2T129" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:D2T129" FT /protein_id="CAW31018.1" FT /translation="MSKRPADIIISTPVSKVRRRLNFDSPYVSRAAAPIVRVTKAKAWA FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDIQHIGKVMCVSDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNVHRDRYQVLRKWYATVTGGQYASKEQALVKKFIRVNNYVVYNQQEAGKYENH FT SENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT CDS complement(722..973) FT /transl_table=1 FT /gene="ac5" FT /product="AC5 protein" FT /db_xref="InterPro:IPR006892" FT /db_xref="UniProtKB/TrEMBL:D2T123" FT /protein_id="CAW31019.1" FT /translation="MILILASFLLVIHNIIINSNKLLHESLFLRRILSTGDSCIPFAQN FT LVPITMHILHSRRTGLIIKHVKNLSKILRLVNWSTVSN" FT CDS complement(1075..1263) FT /transl_table=1 FT /gene="ac3- truncated" FT /product="replication enhancer protein-truncated" FT /db_xref="GOA:D2T131" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:D2T131" FT /protein_id="CAW31020.1" FT /translation="MTSQPPTGRFLRVFKTQVLKYLDNLGVISINNVVRAVDHVLWNVL FT EHVVYVNQSSSIKFNIY" FT CDS complement(1260..1625) FT /transl_table=1 FT /gene="ac2" FT /product="transcription activator protein" FT /db_xref="GOA:D2T132" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:D2T132" FT /protein_id="CAW31021.1" FT /translation="MRPSSPSKAHSTQVPIKVQHRLAKKGTRRRRVDLPCGCSYFIALA FT CHNHGFTHRGTHHCSSSTEWRIYLGDSKSPLFQDNRAPQQTIPHEPRHHHCPDTVQSQP FT EESVGDTQMFPSLPESG" FT CDS complement(1528..2586) FT /transl_table=1 FT /gene="ac1" FT /product="replication associated protein" FT /db_xref="GOA:D2T133" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:D2T133" FT /protein_id="CAW31022.1" FT /translation="MPKISSLLIQNAQYRKSKCSNYLKTLPVLLINCLSEYHKKNTKMG FT LCISMPSSSSKVNPSSETPRHFDVTHPNTSTQFHPNFQGAKSSSDVKSYIEKDGDYIDW FT GQFQIDGRSARGGQQTANDAAAEALNAGSADAALAIIREKLPKDFIFQYHNLKCNLDRI FT FTPPVEVYVSPFSSSSFDQVPEELEVWAAENVVDAAARPLRPKSIVLEGDSRTGKTMWA FT RSLGPHNYLCGHLDLSPKVYSNEAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKP FT VQIKGGIPAIFLCNPGPNSSYKEFLDEEKNSALKNWALKNATFITLEGPLYSGSNQSAA FT QASQEGDQASSC" FT CDS complement(2199..2384) FT /transl_table=1 FT /gene="ac4- truncated" FT /product="AC4-truncated protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:D2T134" FT /protein_id="CAW31023.1" FT /translation="MSLTLIPPPNSTQTSRELSPAQMSSPTSRRTVITSTGVSFRSMED FT LLEEVNRQLMMQQQRP" XX SQ Sequence 2756 BP; 749 A; 549 C; 647 G; 811 T; 0 other; accggatggc cgcgattttt tttttgtggc ccccacaaag cactaactgt caatgacatg 60 ttgaccaatg agaatcgttc ctcgtagcct aattgtttcg tggtcccccc tataaactta 120 gtgcgcaagt tgtgttttcc attcactatg tgggatccgt tattgaacga gtttcccgaa 180 accgttcacg gttttaggtg tatgttagca gttaaatatc tgcagttagt agaaaatacg 240 tattccccag atactctggg atacgattta attagggatt tgatttcagt aataagggct 300 aggaattatg tcgaagcgac cagcagatat aatcatttcc acgcccgttt cgaaggtacg 360 ccgccgtctc aacttcgaca gtccatacgt gagccgtgct gctgccccca ttgtccgcgt 420 caccaaagca aaagcatggg cgaacaggcc catgaacaga aagcccagga tgtacaggat 480 gtacagaagt ccagatgttc ctagaggatg tgaaggccca tgtaaggtcc agtcctttga 540 gtccagacat gatatccagc atataggtaa agtcatgtgt gtcagtgatg ttactcgtgg 600 aactgggctg acccatagag tgggtaagag attttgtgtc aagtctgtgt atgtgttggg 660 caagatttgg atggatgaga acatcaagac caagaatcat acgaatagtg ttatgttttt 720 tttagttaga gaccgtagac cagttgacaa gcctcaggat tttggagagg tttttaacat 780 gtttgataat gagcccagta cggcgactgt gaagaatgtg catcgtgata ggtaccaggt 840 tctgcgcaaa tggtatgcaa ctgtcaccgg tggacaatat gcgtcgaagg aacaagctct 900 cgtgaagaag tttattagag ttaataatta tgttgtgtat aaccagcaag aagctggcaa 960 gtatgagaat cattctgaga atgcgttaat gttgtatatg gcgtgtactc acgcctctaa 1020 tccagtgtat gctactttga agatacggat ctacttctat gattccgtga caaattaata 1080 aatattgaat tttattgaag atgattggtt tacatataca acatgctcta atacattcca 1140 taatacatga tcaactgctc taactacatt attaatactg ataactccta gattatctaa 1200 atacttaagc acttgggtct taaagaccct taagaaacga ccagtcggag gctgtgaggt 1260 catccagatt cgggaaggct aggaaacatt tgtgtatccc caacgctttc ctcaggttgt 1320 gattgaactg tatctggaca gtgatgatgt cttggttcat gaggaatggt ctgttgtggt 1380 gctctgttat cttgaaatag aggggatttt gaatctccca gataaatacg ccattctgtg 1440 cttgagctgc agtgatgagt tcccctgtgc gtgaatccat ggttgtggca ggctaatgct 1500 atgaagtatg aacacccaca cgggagatca acacgacgac gcctggtccc cttcttggct 1560 agcctgtgct gcactttgat tggaacctga gtagagtggg ccttcgaggg tgatgaaggt 1620 cgcattcttt aatgcccaat ttttaagtgc agaattcttc tcctcatcca aaaactcttt 1680 atagcttgag ttgggtcctg gattgcagag gaagatagcg ggaattccgc ctttaatttg 1740 aactggcttt ccgtactttg tatttgattg ccagtccctt tgggccccca tgaattcttt 1800 aaagtgcttt aggtagtggg gatcgacgtc atcaatgacg ttgtaccagg cctcgttgct 1860 gtagaccttt ggactaaggt ctaaatgacc acacagataa ttgtgtggac ccagtgacct 1920 ggcccacatc gtcttccccg ttctactatc accctctaag acaatacttt taggtctcaa 1980 tggccgcgca gcggcatcca ccacgttctc agcagcccag acttcaagtt cttccggaac 2040 ttgatcaaaa gaagaagaag aaaaaggaga aacataaacc tccacaggag gtgtaaaaat 2100 cctatctaaa ttacatttta aattatgata ttgaaaaata aaatctttag ggagtttttc 2160 cctaattatt gctaaagcag cgtcagccga acctgcattt agggcctctg ctgctgcatc 2220 attagctgtc tgttgacctc ctctagcaga tcttccatcg atctgaaact gaccccagtc 2280 gatgtaatca ccgtccttct cgatgtagga cttgacatct gagctggact tagctccctg 2340 gaagtttggg tggaattggg tggaggtatt agggtgagtg acatcgaaat gtctaggggt 2400 ttctgaactt ggatttacct ttgaactgga tgagggcatg gatatgcaga gacccatctt 2460 ggtgtttttc ttgtgatact ctgataaaca atttatcaga aggacaggta atgtttttaa 2520 gtagttcgag catttgctct ttcggtattg ggcattttgg ataagtaagg aagatatttt 2580 tggcatttat acagaaagag ttattacgag gcatattgaa ttggggacat tcaaaactct 2640 gaggaatggg ggactcgggg gacgcattta tatggtgtcc ccaaatggca atttggtaat 2700 tcagaaagaa atttcaaaat ctccacgctc caaaaagcgg ccatccgtat aatatt 2756 //