ID   FN436005; SV 1; circular; genomic DNA; STD; VRL; 2691 BP.
XX
AC   FN436005;
XX
DT   09-JUN-2010 (Rel. 105, Created)
DT   09-JUN-2010 (Rel. 105, Last updated, Version 1)
XX
DE   Sida micrantha mosaic virus segment DNA A, complete sequence, isolate Mato
DE   grosso do sul:2:2007
XX
KW   complete genome.
XX
OS   Sida micrantha mosaic virus
OC   Viruses; Geminiviridae; Begomovirus.
XX
RN   [1]
RP   1-2691
RA   Paprotka T.;
RT   ;
RL   Submitted (12-AUG-2009) to the INSDC.
RL   Paprotka T., Molecular Biology and Virology of Plants, University of
RL   Stuttgart, Pfaffenwaldring 57, 70550 Stuttgart, GERMANY.
XX
RN   [2]
RA   Paprotka T., Metzler V., Jeske H.;
RT   "The first DNA 1-like .. satellites in association with New World
RT   begomoviruses in natural infections";
RL   Virology 0:0(2010).
XX
DR   MD5; 2271863cc56127cdf7abe50fec917d8b.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2691
FT                   /organism="Sida micrantha mosaic virus"
FT                   /segment="DNA A"
FT                   /host="Sida micrantha"
FT                   /isolate="Brazil:Mato grosso do sul:2:2007"
FT                   /mol_type="genomic DNA"
FT                   /country="Brazil:Mato Grosso do Sul"
FT                   /lat_lon="20.24 S 56.38 W"
FT                   /collection_date="30-Nov-2007"
FT                   /db_xref="taxon:228897"
FT   CDS             256..1038
FT                   /gene="AV1"
FT                   /product="coat protein"
FT                   /db_xref="GOA:D7FB04"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="InterPro:IPR000650"
FT                   /db_xref="UniProtKB/TrEMBL:D7FB04"
FT                   /protein_id="CBA18100.1"
FT                   /translation="MYDVSNYFEMPKRDPSWRQMAGTSKVSRTSNFSPRGGGGPKYNKA
FT                   SEWVHRPMYRKPRIYRMIRTPDVPRGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNG
FT                   ITHRVGKRFCVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMF
FT                   DNEPSTATVKNDLRDRYQVMHKFYAKVTGGQYASNEQALVKRFWKVNNHVVYNHQEAGK
FT                   YENHTENALLLYMACTHASNPVYATLKIRIYFYDSITN"
FT   CDS             complement(1035..1433)
FT                   /gene="AC3"
FT                   /product="replication enhancer"
FT                   /db_xref="GOA:D7FB12"
FT                   /db_xref="InterPro:IPR000657"
FT                   /db_xref="UniProtKB/TrEMBL:D7FB12"
FT                   /protein_id="CBA18101.1"
FT                   /translation="MDSRTGESITAPQAENGVYIWEITNPLYFKMYHVEDPPYTRTRVY
FT                   HVQIRFNHNLRKALGLHKAYLNFQVWTTSLTASGTTYLIRLRRLVMMYLDQLGVISLNN
FT                   VIRAVRFATDKAYVNYVLEDHDIKFKFY"
FT   CDS             complement(1180..1599)
FT                   /gene="AC2"
FT                   /product="transcriptional regulator"
FT                   /db_xref="GOA:D7FB13"
FT                   /db_xref="InterPro:IPR000942"
FT                   /db_xref="UniProtKB/TrEMBL:D7FB13"
FT                   /protein_id="CBA18102.1"
FT                   /translation="MQHSVLGHSTMQNSSSSTPPSIKPRHRIAKKRAIRRRRVDLECGC
FT                   SIFTHLNCTGHGFTHRGIHHCTSGREWRLYLGDNKSPLFQDVPRRGSTVHEDQSVPRTD
FT                   KVQPQPQESIGSPQGLPELPSLDDFSDSFWNDLFD"
FT   CDS             complement(1490..2566)
FT                   /gene="AC1"
FT                   /product="replication associated protein"
FT                   /db_xref="GOA:D7FB14"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:D7FB14"
FT                   /protein_id="CBA18103.1"
FT                   /translation="MPPPKRFKISAKNYFLTYPQCSLTKEETLSQLQSLTTPVNKKFIK
FT                   ICRELHEDGQPHLHVLIQFEGKYQCTNQRFFDLVSPSRSVHFHPNIQGAKSASDVKSYI
FT                   SKDGDTIDWGNFQVDGRSARGGCQTANDAAAEAMNAPSKEAALQIVREKLPEKFLFQFH
FT                   NLNNNLDKIFAKAPEPWAPPYQLSSFTNVPDEMQEWADDYFGRGSAARPLRPISLIVEG
FT                   SSRTGKTMWARALGPHNYLSGHLDFNSKVFSDEVEYNVIDDVAPHYLKLKHWKELIGAQ
FT                   QKWQTNCKYGKPRLIEGGVPSIVLCNPGEGASYKDFLDKEENAALRAWTLHNAKFIFLD
FT                   APLYQTETQDCQEESHQA"
FT   CDS             complement(2152..2409)
FT                   /gene="AC4"
FT                   /product="AC4 protein"
FT                   /db_xref="InterPro:IPR002488"
FT                   /db_xref="UniProtKB/TrEMBL:D7FB15"
FT                   /protein_id="CBA18104.1"
FT                   /translation="MGSHISTCLYSSKGNTSARIRDSSIWCPRPGQYISIRTFRELNQR
FT                   PTSSPTSARTGTQSTGEISRSTEEVLEEVARQLTTLPQKP"
XX
SQ   Sequence 2691 BP; 657 A; 626 C; 658 G; 750 T; 0 other;
     accggatggc cgcgcgattt ttccccccct tgccccccat cgcctacgtg gcgcgctggt        60
     ggtcgtgcga tctctctccc cctctctcgc gctacgtgga gctctgatgt ccgcgcgttc       120
     ccccccgcgc gctatgcctt taatttaaat taaaggaaat aactttcatc aggaccaatg       180
     aaattgcgtc tttaaagcct agatatttgg gaaagacttg ggcccgaagt tgttggacga       240
     ctatataatt aagtcatgta tgacgtcagt aattatttcg aaatgcccaa gcgggatccc       300
     tcatggcgcc agatggcggg aacctcaaag gttagccgca ctagcaactt ttcccctcgt       360
     ggaggtggag gcccaaagta caacaaggcc tcggaatggg ttcacaggcc catgtatagg       420
     aagcccagga tatacaggat gataaggact cctgatgttc caagaggctg tgaagggccc       480
     tgtaaggtgc agtcctacga gcagcgtcac gatatttcac atgtcgggaa ggtcatgtgc       540
     atatctgatg tcacacgtgg caacggtata actcaccgcg tcggtaagcg tttctgcgtt       600
     aagtctgtgt acattttagg gaagatatgg atggacgaga acatcaagct caagaaccac       660
     acgaacagtg tcatgttctg gttggtcaga gaccgtagac cgtatggcac tcctatggac       720
     tttggccagg tgtttaacat gtttgacaac gagcccagca ctgctacggt gaagaacgat       780
     ctgcgtgatc gttatcaagt tatgcacaag ttctacgcca aggtcactgg tggacaatat       840
     gccagcaacg agcaggctct ggtcaagagg ttctggaagg tcaacaatca tgtggtgtac       900
     aaccaccagg aagctggcaa gtatgagaat cacacggaga atgctctgtt actgtatatg       960
     gcatgtaccc atgcctctaa ccctgtgtat gcaacgctta agattcgtat ttacttctac      1020
     gattcgataa ccaattaata aaatttgaat tttatatcat gatcttcaag tacatagttt      1080
     acatatgctt tgtcagtggc aaagcgaacg gctctaatta cattattaag ggaaattaca      1140
     cctaattgat ctaagtacat catcacaagg cgtctaagcc taatcaaata agtcgttcca      1200
     gaagctgtca gagaagtcgt ccagacttgg aagttcaggt aggccttgtg gagacccaat      1260
     gctttcctga ggttgtggtt gaaccttatc tgtacgtggt acactctggt cctcgtgtac      1320
     ggtggatcct ctacgtggta catcttgaaa tagaggggat ttgttatctc ccagatataa      1380
     acgccattct ctgcctgagg tgcagtgatg gattccccgg tgcgtgaatc catgcccggt      1440
     gcagttgagg tgtgtgaata tggagcagcc gcactctagg tccactcgtc tacgcctgat      1500
     ggctctcttc ttggcaatcc tgtgtctcgg tttgatagag gggggcgtcg aggaagatga      1560
     attttgcatt gtggagtgtc caagcacgga gtgctgcatt ttcctctttg tctaggaagt      1620
     ctttatagct agccccctca ccaggattgc acaacacgat tgaagggacc ccaccttcaa      1680
     tcaaacgagg ctttccgtac ttgcaatttg tctgccattt ttgttgggcc cctattagct      1740
     ctttccaatg tttcaacttt aagtaatgcg gagcgacgtc atcaatgacg ttatactcca      1800
     cttcgtctga gaacaccttt gagttgaaat ctagatggcc actcaagtaa ttatgtgggc      1860
     ctaatgctct agcccacatc gtcttacccg ttctgctact gccttcaaca attaaactta      1920
     taggcctcaa tggccgcgca gcggaacccc tcccaaaata atcatcggcc cactcttgca      1980
     tctcgtctgg cacgttagtg aaggaggaga gttgatacgg aggggcccat ggctccggag      2040
     cctttgcgaa gatcttatct aaattattat ttagattgtg gaactgaaat aagaactttt      2100
     ccggtaactt ctccctaacg atctgcaagg ctgcttcttt agatggggcg ttcatggctt      2160
     ctgcggcagc gtcgttagct gtctggcaac ctcctctagc acttcttccg tcgacctgga      2220
     aatttcccca gtcgattgtg tccccgtcct tgctgatgta ggacttgacg tcggacgctg      2280
     atttagctcc ctgaatgttc ggatggaaat gtactgaccg ggacggggac accagatcga      2340
     agaatctctg attcgtgcac tggtatttcc cttcgaactg tataagcacg tggagatgtg      2400
     gctgcccatc ttcgtgaagt tctctgcaaa tcttgatgaa cttcttgtta actggtgttg      2460
     ttaagctctg taattgggaa agtgtctcct ctttggttaa ggagcactgg ggatatgtca      2520
     agaaataatt cttggcactt attttaaaac gctttggcgg tggcattttt gtaaataaag      2580
     gggtgtaccc cggatgagag ctcgctctat aagtcttatg tattggggta atggggacaa      2640
     tatatagtag aacttcctaa gggactagta gcggccatcc ttactaatat t               2691
//