ID FR751146; SV 1; circular; genomic DNA; STD; VRL; 2744 BP. XX AC FR751146; XX DT 22-JUN-2011 (Rel. 109, Created) DT 22-JUN-2011 (Rel. 109, Last updated, Version 1) XX DE Cotton leaf curl Gezira virus DNA-A, complete sequence, clone NT28 XX KW complete genome. XX OS Cotton leaf curl Gezira virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2744 RA Tahir M.N.; RT ; RL Submitted (25-DEC-2010) to the INSDC. RL Tahir M.N., Agricultural Biotechnology Division, National Institute for RL Biotechnology & Genetic Engineering, NIBGE, Jhang Road, Faisalabad, Punjab, RL 38000, PAKISTAN. XX RN [2] RX DOI; 10.1371/journal.pone.0020366. RX PUBMED; 21637815. RA Tahir M.N., Amin I., Briddon R.W., Mansoor S.; RT "The merging of two dynasties--identification of an African cotton leaf RT curl disease-associated begomovirus with cotton in Pakistan"; RL PLoS One 6(5):e20366-e20366(2011). XX DR MD5; 20cc9b27198bc8cbf8288ae957c3d79e. DR EuropePMC; PMC3102712; 21637815. XX FH Key Location/Qualifiers FH FT source 1..2744 FT /organism="Cotton leaf curl Gezira virus" FT /segment="DNA-A" FT /host="Gossypium hirsutum" FT /mol_type="genomic DNA" FT /country="Pakistan:Sindh, Tando Adam" FT /collection_date="2005" FT /clone="NT28" FT /tissue_type="Leaf" FT /db_xref="taxon:222459" FT CDS 143..511 FT /gene="V2" FT /product="precoat protein" FT /db_xref="GOA:F8K9W5" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:F8K9W5" FT /protein_id="CBY85335.1" FT /translation="MWDPLLNDFPESVHGFRCMLAVKYLQAVRESYDPSTLGYDLLSDL FT IGVVRRTNYVEATSRYHHFQSRLESASPSELRQSRVILCTCPHCPRHKQTSGVVQQTQL FT QEAQNLQNLSEPRCPKGV" FT CDS 303..1079 FT /gene="V1" FT /product="coat protein" FT /db_xref="GOA:F8K9W6" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:F8K9W6" FT /protein_id="CBY85336.1" FT /translation="MSKRPADIIISSPASKVRRRLNFDSPGLSSARAPTVLVTNKRRAW FT SNRPNYRKPRIYRIYRSPDVPKGCEGPCKVQSYEQRDDVKHTGIVRCVSDVTKGTGLTH FT RTGKRFTIKSIYILGKVWMDENIKKQNHTNNVMFFLVRDRRPYGNSPMDFGQVFNMFDN FT EPSTATVKNDYRDRFQVMRKFSATVTGGPSGMKEQALVRRFFKINSQIVYNHQEAAKYE FT NHTENALLLYMACTHASNPVYATLKIRIYFYDSVSN" FT CDS complement(531..1013) FT /gene="C5" FT /product="hypothetical protein" FT /db_xref="GOA:F8K9W7" FT /db_xref="InterPro:IPR006892" FT /db_xref="UniProtKB/TrEMBL:F8K9W7" FT /protein_id="CBY85337.1" FT /translation="MSTCHIQQQSILSMVLILRSFLMVINNLTVNLKKPTNKSLFLHPR FT RTTSYSSTKLTHHLETISIIILYSSSTWLIIKHVKNLTKIHRGIPIRSSITNKEKHDIV FT GVILLLNVLIHPYLTKNINGFDCETLSSTMSKPSSLGHIRNTTNNTSMLHIITLFI" FT CDS complement(1076..1477) FT /gene="C3" FT /product="replication enhancer protein" FT /db_xref="GOA:F8K9W0" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:F8K9W0" FT /protein_id="CBY85338.1" FT /translation="MDSRTGELITAHQTENGVLIWTINNPLYFKTIKEIPLTHGNQTMV FT EMQIRFNYNLRKELGIHKCFMNFRVWTISRPPTGLFLNVFRKQIMKYLYRIGVISINNV FT IRAVNHVLYDVLQTTVESEFTHNIQIKLY" FT CDS complement(1221..1625) FT /gene="C2" FT /product="transcriptional activator protein" FT /db_xref="GOA:Q77PZ9" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q77PZ9" FT /protein_id="CBY85339.1" FT /translation="MRPSSPSQIRCTQVPIKVQHREAKKRAIRRRRIDIPCGCTVYVAF FT TCRDNGFTHRGTHHCASDREWRTYLDNQQSPVFQNHKGDSSNARESNNGRDADKIQLQP FT QEGIGDSQMFHELQGLDDLTPSDWSFLKRI" FT CDS complement(1525..2613) FT /gene="C1" FT /product="Rep protein" FT /db_xref="GOA:F8K9X0" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:F8K9X0" FT /protein_id="CBY85340.1" FT /translation="MAPPHRFQIYAKNYFLTFPKCSLTKEEALEQIQQISTASNKKYIK FT ICRELHEDGQPHLHVLLQFEGKFKCQNQRLFDLVSPNRSTHFHPNIQGAKSSSDVKSYI FT DKDGDTLEWGEFQIDGRSARGGQQTANDAYAAALNAGSKAEALRVIRELAPKDFVLQFH FT NLNSNLERIFQEPPAPYVSPFLSSSFDQVPEELEEWAAENVVEAAARPSRPISIVIEGE FT SRTGKTVWARSLGPHNYLCGHLDLSPKVFSNDAWYNVIDDVDPHYLKHFKEFMGAQKDW FT QSNTKYGKPVQLKGGIPTIFLCNPGPNSSYKEYLDEDKNAHLKSWALKNATFITLSNPL FT YSGTNQSSASGGQEESNQETQD" FT CDS complement(2163..2456) FT /gene="C4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:Q9IN47" FT /protein_id="CBY85341.1" FT /translation="MANLIYMCFSSSKGSSSAKIRDSSTWSPQIGQHISIQTFRELNPA FT PTSSPTSTRMETHWNGENSRSTEDLQEEDNRPPMTLTPQRLTQEVRQRLLGL" XX SQ Sequence 2744 BP; 686 A; 592 C; 614 G; 852 T; 0 other; accggtgggc gcgaaaaaaa aaagtggtcc ccgccccacg tgaacatgtc gcgcgatgct 60 gtccaatcag aactcgcgct ctacgcatta taatttgaaa tttgaaatat aaacttgctc 120 cctaagtttg ttaggcataa ctatgtggga tccgttattg aacgacttcc ctgaatccgt 180 tcacggtttc cgttgtatgc tagccgtgaa atatttgcag gctgttcgag agtcgtacga 240 tccttccact cttgggtacg atcttcttag cgatctaatc ggagttgttc gccgtaccaa 300 ctatgtcgaa gcgaccagca gatatcatca tttccagtcc cgcctcgaaa gtgcgtcgcc 360 gtctgaactt cgacagtccc gggttatcct ctgcacgtgc ccccactgtc ctcgtcacaa 420 acaaacgtcg ggcgtggtcc aacagaccca attacaggaa gcccagaatt tacagaattt 480 atcggagccc agatgtccca aaggggtgtg aaggtccatg taaggtccag tcatatgaac 540 agcgtgatga tgtgaagcat actggtattg ttcgttgtgt ttctgatgtg accaagggaa 600 ctgggcttac tcatcgtact ggaaagcgtt tcacaatcaa atccatttat attcttggta 660 aggtatggat ggatgagaac attaagaagc agaatcacac caacaatgtc atgtttttcc 720 ttgttcgtga tagaagaccg tatgggaatt ccccgatgga ttttggtcaa gtttttaaca 780 tgtttgataa tgagccaagt actgctactg taaagaatga ttatcgagat cgtttccagg 840 tgatgcgtaa gtttagtgct actgtaactg gtggtccttc tgggatgaag gaacaggctc 900 ttgttcgtag gttttttaag attaacagtc agattgttta taaccatcag gaagctgcga 960 agtatgagaa ccatactgag aatgctttgt tgttgtatat ggcatgtact catgcttcta 1020 atcctgtgta tgctacgtta aagatacgga tctacttcta cgattcggta tctaattaat 1080 ataattttat ttgaatattg tgggtgaatt cactttcgac ggttgtttgc aatacatcgt 1140 acaaaacatg attgactgcc ctaattacat tattaattga aattacgcct attctataca 1200 aatatttcat aatctgcttc ctaaatacgt ttaagaaaag accagtcgga gggcgtgaga 1260 tcgtccagac cctgaagttc atgaaacatt tgtgaatccc caattccttc ctgaggttgt 1320 agttgaatct tatctgcatc tctaccattg tttgattccc gtgcgttaga ggaatctcct 1380 ttatggtttt gaaatacagg ggattgttga ttgtccagat aagtacgcca ttctctgtct 1440 gatgcgcagt gatgagttcc cctgtgcgtg aatccattgt ctctgcacgt gaaggctacg 1500 tatactgtgc aaccacaagg gatgtcaatc ctgcgtctcc tgattgctct cttcttggcc 1560 tcccgatgct gaactttgat tggtacctga gtacagcgga tttgagaggg tgatgaaggt 1620 cgcattcttt aatgcccagg atttgagatg cgcgttcttg tcctcgtcta aatactcttt 1680 atacgaggaa ttgggacctg gattgcagag gaagattgtt gggatgcccc ctttaagttg 1740 aactggtttc ccgtattttg tgttgctttg ccagtccttt tgtgcaccca tgaactcctt 1800 aaagtgtttc agataatgcg ggtcaacatc atctatgacg ttataccatg cgtcattact 1860 gaacactttt gggcttagat caagatggcc gcacagataa ttgtgaggcc caagacttct 1920 ggcccatacg gtctttcctg ttctgctttc cccttcaatc actatactaa tcggtctact 1980 tggccgcgca gcggcctcaa cgacgttctc cgccgcccat tcttcaagtt cttctggaac 2040 ttggtcgaac gaagaagaca aaaaaggaga aacataagga gctggaggct cctgaaaaat 2100 cctttctaaa ttactattta aattatgaaa ttgtaaaaca aaatctttgg gagctaactc 2160 ccttataacc ctaagagcct ctgccttact tcctgcgtta agcgctgcgg cgtaagcgtc 2220 attggcggtc tgttgtcctc ctcttgcaga tcttccgtcg atctggaatt ctccccattc 2280 cagtgtgtct ccatccttgt cgatgtagga cttgacgtcg gagctggatt tagctccctg 2340 aatgtttgga tggaaatgtg ttgacctatt tggggagacc aggtcgaaga gtctctgatt 2400 ttggcacttg aacttccctt cgaactggag aagcacatgt agatgaggtt ggccatcctc 2460 gtgaagctct ctgcagatct tgatatattt cttgtttgaa gctgtgctta tttgctgaat 2520 ttgctctagg gcttcttctt tggttagaga acattttggg aaagttagga aataattctt 2580 ggcatatatt tggaatctgt ggggaggagc cattgacttg gtcaatcggt actcagatgc 2640 ttctctccaa tatatcggta ctcaatatat agtgagtacc aaatggcatt ttggtaaaaa 2700 tcccaataat tttgaacccc catagcgccc accgttctaa tatt 2744 //