ID   GU127653; SV 1; linear; genomic RNA; STD; VRL; 1725 BP.
XX
AC   GU127653;
XX
DT   24-OCT-2011 (Rel. 110, Created)
DT   15-MAY-2014 (Rel. 120, Last updated, Version 5)
XX
DE   Sweet potato chlorotic stunt virus isolate HOM76 RNA-dependent RNA
DE   polymerase (RdRp) gene, partial cds; and ribonuclease III (RNaseIII), p7
DE   protein (p7), and p22 protein (p22) genes, complete cds.
XX
KW   .
XX
OS   Sweet potato chlorotic stunt virus
OC   Viruses; Riboviria; Closteroviridae; Crinivirus.
XX
RN   [1]
RC   Publication Status: Online-Only
RP   1-1725
RX   PUBMED; 24278443.
RA   Tugume A.K., Amayo R., Weinheimer I., Mukasa S.B., Rubaihayo P.R.,
RA   Valkonen J.P.;
RT   "Genetic Variability and Evolutionary Implications of RNA Silencing
RT   Suppressor Genes in RNA1 of Sweet Potato Chlorotic Stunt Virus Isolates
RT   Infecting Sweetpotato and Related Wild Species";
RL   PLoS One 8(11):E81479-E81479(2013).
XX
RN   [2]
RP   1-1725
RA   Tugume A.K., Amayo R., Mukasa S.B.;
RT   ;
RL   Submitted (23-OCT-2009) to the INSDC.
RL   Applied Biology, University of Helsinki, Latokartanonkaari 7, Helsinki
RL   FIN-00014, Finland
XX
DR   MD5; d35b6ee717391e1afbc68e1f6dd9c77a.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1725
FT                   /organism="Sweet potato chlorotic stunt virus"
FT                   /host="Ipomoea hederifolia"
FT                   /isolate="HOM76"
FT                   /mol_type="genomic RNA"
FT                   /country="Uganda:Hoima"
FT                   /collection_date="18-Jun-2007"
FT                   /db_xref="taxon:81931"
FT   gene            <1..54
FT                   /gene="RdRp"
FT   CDS             <1..54
FT                   /codon_start=1
FT                   /gene="RdRp"
FT                   /product="RNA-dependent RNA polymerase"
FT                   /note="RNA replication"
FT                   /db_xref="GOA:M0QTP2"
FT                   /db_xref="UniProtKB/TrEMBL:M0QTP2"
FT                   /protein_id="ADQ42620.1"
FT                   /translation="NFSSFRKIFDEFFVVDI"
FT   gene            71..757
FT                   /gene="RNaseIII"
FT   CDS             71..757
FT                   /codon_start=1
FT                   /gene="RNaseIII"
FT                   /product="ribonuclease III"
FT                   /note="endonuclease; suppressor of RNA silencing"
FT                   /db_xref="GOA:M0QTP3"
FT                   /db_xref="InterPro:IPR036389"
FT                   /db_xref="UniProtKB/TrEMBL:M0QTP3"
FT                   /protein_id="ADQ42621.1"
FT                   /translation="MVPIYSDVSEESKLTVFGSRHRLDSIIHSICTSDDRDRYEILGDW
FT                   AVASYVTRMLTDLFKHNADAESLSLLRAHNISNVMFAKVMVESKLFEDFCLWLTPDQMQ
FT                   LCRKTFAGGRSLYEVNVKFLANYFERIVGWLVVHDCSESVEKFLDLFLKPHMSFHIKKP
FT                   ARSILEEWALKNNKRLDIHTGEYNVNKVVYVLVDGQEVSRASDLISKKRAISKAVSFAV
FT                   EALNLS"
FT   gene            762..935
FT                   /gene="p7"
FT   CDS             762..935
FT                   /codon_start=1
FT                   /gene="p7"
FT                   /product="p7 protein"
FT                   /db_xref="GOA:M0QTP4"
FT                   /db_xref="UniProtKB/TrEMBL:M0QTP4"
FT                   /protein_id="ADQ42623.1"
FT                   /translation="MEYSAIFNECCKECAMFNPKKCRFDVALLWSVIGFFTFNIILLFV
FT                   FCLLSIRIRRSY"
FT   gene            1091..1666
FT                   /gene="p22"
FT   CDS             1091..1666
FT                   /codon_start=1
FT                   /gene="p22"
FT                   /product="p22 protein"
FT                   /db_xref="UniProtKB/TrEMBL:Q8JJW6"
FT                   /protein_id="ADQ42622.1"
FT                   /translation="MSSGAIYSELNRFLKYLRELDFSNFCFSDFLFRFSSLKSLIDEYS
FT                   SHWLVNTNELVWYRTICEQRLHPHLFDANRLLTRINVSDLKHDLIMIRDHFSSIDDFLN
FT                   KYPAIPILVSFTKNISAFLEDNEWESVIHHTDSLNRLVFRESWSDGYGYVNHHRLSASS
FT                   HDFQHMKLCDIFRLSKDKLNSGVFTFLL"
XX
SQ   Sequence 1725 BP; 460 A; 262 C; 359 G; 644 T; 0 other;
     aatttttcgt cgtttcgtaa gattttcgac gagttctttg ttgttgatat ttgatttttc        60
     accgattatg atggttccga tttattccga cgtttccgag gaaagcaaac ttactgtctt       120
     cggaagtcgt catagattgg attctattat acacagcatt tgtacttcag atgatagaga       180
     cagatatgag attttaggtg attgggctgt cgcatcgtat gtcacgcgta tgctgacaga       240
     tctcttcaaa cataatgctg atgctgaatc tctgtcgttg cttcgcgctc ataatatttc       300
     taatgttatg ttcgcaaaag tcatggtaga atcaaaactc ttcgaagatt tttgtctttg       360
     gttgactccc gaccaaatgc agttgtgtag gaagactttc gccggtggga gaagtctgta       420
     tgaggtcaat gttaaattct tagccaacta ttttgagaga atcgttggtt ggttggttgt       480
     gcatgattgt tcagaaagtg ttgagaagtt tcttgatctt ttcttgaagc ctcatatgtc       540
     tttccacatt aagaaacctg cccgttctat tcttgaagaa tgggccttga agaataacaa       600
     gagacttgac attcatactg gtgagtataa tgtcaacaag gtagtttatg tcctagtcga       660
     cggacaagag gtcagtcggg ctagtgattt gattagtaag aagagagcaa tttcaaaagc       720
     ggtttctttc gctgttgaag ctctaaatct gagttgaatc catggagtac tctgctattt       780
     ttaatgaatg ttgtaaagaa tgtgcgatgt ttaaccccaa gaaatgtcgc tttgatgtgg       840
     cactactttg gtctgttatt ggattcttta cttttaatat tattttattg tttgtatttt       900
     gccttttgag tattagaatt agaaggtctt attaattagt tatcgtagat aagtggaata       960
     gagtgaaaaa ctactgtaat tgattattgt gatgtgtcac aactcacaat ttaattgatt      1020
     cagtccaacc tgcactagtt tgtggcgagg gtggttgttc gttcggtttt attatctatt      1080
     tctttgaacg atgagttctg gagcaattta ctctgaactt aatcgttttc ttaagtatct      1140
     tagggagtta gattttagta atttttgttt tagtgatttt ttatttcgtt tttcttccct      1200
     aaaatcacta atcgatgagt atagtagtca ttggttagta aatacgaatg aattagtctg      1260
     gtatagaaca atctgtgagc aacgactgca tcctcatctt ttcgatgcaa acaggttgtt      1320
     aacacggata aatgtttcag atttgaagca tgacttgata atgattcgtg atcatttttc      1380
     gagtattgat gattttctaa acaagtatcc ggctatacca attcttgtct cattcaccaa      1440
     aaatattagt gcgtttttag aagataatga gtgggaatcc gttattcatc atacggactc      1500
     actcaatcgt cttgttttcc gagagtcgtg gtcagacggt tatggttacg ttaaccacca      1560
     tcgtctttca gcgtcgtcgc atgattttca acatatgaag ttatgtgaca tttttcgttt      1620
     gtcgaaggat aagttgaaca gtggtgtgtt cactttcctt ctttaatgtt ttcttttagt      1680
     atattaataa aaatcgataa agatattagg gtagatttga ttaat                      1725
//