ID GU130097; SV 1; linear; genomic RNA; STD; VRL; 2417 BP. XX AC GU130097; XX DT 02-NOV-2010 (Rel. 106, Created) DT 02-NOV-2010 (Rel. 106, Last updated, Version 1) XX DE Pepino mosaic virus isolate CI-3-08 RNA-dependent RNA polymerase (RdRp) DE gene, partial cds; and triple gene block protein 1 (TGBp1), triple gene DE block protein 2 (TGBp2), triple gene block protein 3 (TGBp3), and coat DE protein (CP) genes, complete cds. XX KW . XX OS Pepino mosaic virus OC Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus. XX RN [1] RP 1-2417 RA Cordoba-Selles M.C.; RT "Characterization of distinct Spanish isolates of Pepino mosaic virus RT causing necrosis in tomato"; RL Unpublished. XX RN [2] RP 1-2417 RA Cordoba-Selles M.C.; RT ; RL Submitted (24-OCT-2009) to the INSDC. RL IAM, UPV, Camino de Vera s/n, Valencia 46022, Spain XX DR MD5; 49aac7ad0102710bb08908fb2df085be. DR EuropePMC; PMC3132167; 21702943. XX FH Key Location/Qualifiers FH FT source 1..2417 FT /organism="Pepino mosaic virus" FT /host="Solanum lycopersicum" FT /isolate="CI-3-08" FT /mol_type="genomic RNA" FT /country="Spain" FT /collection_date="2008" FT /db_xref="taxon:112229" FT gene <1..468 FT /gene="RdRp" FT CDS <1..468 FT /codon_start=1 FT /gene="RdRp" FT /product="RNA-dependent RNA polymerase" FT /note="ORF1" FT /db_xref="GOA:E3SX47" FT /db_xref="UniProtKB/TrEMBL:E3SX47" FT /protein_id="ADP00508.1" FT /translation="ECSIAYTATRFHIDNTIKQVYAGDDMALDGVVSEKKSFRKLQNLL FT KLTSKTLYPKQVKGDYAEFCGWTFTPGGIIKNPLKMHASIMLQEAIGNLHTAARSYAID FT MKHSYQMGDQLHDYLTPDEAEQHFLAVRKLHKLHQGEAMRLGEKSPPRSTH" FT gene 494..1198 FT /gene="TGBp1" FT CDS 494..1198 FT /codon_start=1 FT /gene="TGBp1" FT /product="triple gene block protein 1" FT /note="ORF2" FT /db_xref="GOA:Q334F6" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q334F6" FT /protein_id="ADP00509.1" FT /translation="MERSTLINLLLLHKFEHKINTEGIIVVHGIAGTGKTTLLRTLFSA FT YPSLVIGSPRPCYLDKANKISQVCLSCFPNTLCDIVDEYHLLESFPEPKLAIFGDPCQC FT TYIERLRTPNYTSFRTHRFGKSTAALLNKLFDLNIESVKAQDDTVEYFDPFAVDPSEHI FT SASEKEVLEFVGDQVETTSSEELAGLEFSEVTFYCTTLAGAVQENPAKTFISLTRHTSK FT LTIGELNARSDS" FT gene 1179..1550 FT /gene="TGBp2" FT CDS 1179..1550 FT /codon_start=1 FT /gene="TGBp2" FT /product="triple gene block protein 2" FT /note="ORF3" FT /db_xref="GOA:Q699Z7" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:Q699Z7" FT /protein_id="ADP00510.1" FT /translation="MPGLTPRADLTDTYKIIAIAFLLSACIYFQNSHYQPVAGDNLHRL FT PFGGQYQDGTKKISYFPQQQSYFHSGNKLNVLILIFILTLGIVLTNKFSFSISRNTHQH FT HCYNTHSATQTGQSVPGHH" FT gene 1402..1650 FT /gene="TGBp3" FT CDS 1402..1650 FT /codon_start=1 FT /gene="TGBp3" FT /product="triple gene block protein 3" FT /note="ORF4" FT /db_xref="GOA:Q334E8" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/TrEMBL:Q334E8" FT /protein_id="ADP00511.1" FT /translation="MSSYLSSFLHWVLSSPINLVLALAVILTSIIATTHILQPKQVNQC FT QVIIDGAAIVITNCPNTPEVLKAINFSPWNGLSFPQL" FT gene 1696..2409 FT /gene="CP" FT CDS 1696..2409 FT /codon_start=1 FT /gene="CP" FT /product="coat protein" FT /note="ORF5" FT /db_xref="GOA:E3SX51" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/TrEMBL:E3SX51" FT /protein_id="ADP00512.1" FT /translation="MENQPSASNPSDVPPTAAQAGAQSPVDFSNPNTAPSLSDLKKIKY FT VSTVTSVATPAEIEALGKIFTAMGLAANETGPAMWDLARAYADVQSSKSAQLIGATPSN FT PALSRRALAAQFDRINITPRQFCMYFAKIVWNILLDSNVPPANWAKLGYQEDTKFAAFD FT FFDGVTNPASLQPADGLIRQPNEKELAAHSVAKYGALARQKISTGNYITTLGEVTRGHM FT GGANTMYAIDAPPEL" XX SQ Sequence 2417 BP; 730 A; 575 C; 441 G; 671 T; 0 other; gagtgttcga ttgcatacac tgccacaaga ttccatattg acaatactat taagcaagtg 60 tatgccggtg acgacatggc attagatgga gttgtgagtg aaaagaaatc attcaggaag 120 ttacaaaatc tactaaaact cacttcaaaa acgctgtacc caaaacaggt taaaggggat 180 tacgctgaat tttgtggttg gactttcaca ccagggggta taattaaaaa tccacttaaa 240 atgcatgcct caattatgct gcaagaagcc attggcaatc tgcacacagc agccagatct 300 tatgcaattg acatgaagca ttcataccaa atgggtgacc aactgcatga ctacctaacc 360 cctgatgaag ctgaacaaca tttcctagct gtgagaaagc ttcacaaact ccatcaaggc 420 gaggccatgc gtcttggtga gaaaagtcca ccaagatcaa cccattaagg ggttaagttt 480 tccccagttt gaaatggaaa gatcaacttt gatcaattta cttctgttac acaaatttga 540 acacaagatt aacactgaag gaatcattgt tgtgcacgga attgctggaa ctgggaaaac 600 cacattgctt aggactttat tttctgcata ccctagctta gttataggtt cacctaggcc 660 ttgttactta gataaagcta ataaaatttc acaagtttgc ctttcttgtt ttccaaatac 720 cttgtgtgac attgttgacg agtaccatct cttagaaagt tttcctgaac caaaactagc 780 catttttggt gacccctgtc agtgcactta cattgaaagg ttgagaacac ccaactacac 840 atccttcaga acacaccgat ttggcaaatc cactgctgct ctactaaaca agttatttga 900 tcttaacatt gagtcagtca aagcacaaga cgacacagta gaatactttg atcctttcgc 960 agtggacccc tctgaacaca tttctgcttc agaaaaagaa gttttggaat ttgtaggtga 1020 tcaagttgag actacaagct ctgaagaact agctggtctc gagtttagtg aagttacttt 1080 ctactgtacc acacttgctg gtgctgttca agaaaatcct gccaaaacct tcatttcact 1140 cactagacac acttcaaagc tcacaattgg tgaactaaat gccaggtctg actcctagag 1200 ctgatcttac tgacacgtat aaaatcattg ctatagcctt tctactgtca gcttgcattt 1260 acttccaaaa cagtcattat caaccagttg caggtgataa tttgcacaga ctaccctttg 1320 gtggtcagta tcaagacgga actaagaaga tttcttactt tccgcagcaa caatcctact 1380 ttcactcagg aaacaagctt aatgtcctca tacttatctt cattcttaca ctgggtattg 1440 tcctcaccaa taaatttagt tttagcatta gccgtaatac tcaccagcat cattgctaca 1500 acacacattc tgcaacccaa acaggtcaat cagtgccagg tcatcattga tggtgcagcc 1560 atagttataa caaattgtcc aaacacacca gaagttctta aagcaatcaa cttctcccct 1620 tggaacgggt taagttttcc tcaattgtga aatcatattt gttatctagt taaattcaaa 1680 caatttaact caactatgga aaaccaacct tcagcttcta acccatcaga tgtaccacca 1740 actgctgctc aagctggtgc ccagagccca gtcgacttct caaatcctaa tacagctcct 1800 tccctaagtg atttgaagaa gatcaaatac gtgtcaaccg tcacttcagt tgccacgcct 1860 gctgaaattg aggcccttgg caagatcttt actgccatgg gtttagcagc caatgagacc 1920 ggacctgcca tgtgggacct cgctcgtgct tatgctgatg tgcaaagttc aaaatctgca 1980 caacttatag gtgccacacc atccaaccct gctttgtcta gacgtgcact tgctgcacag 2040 tttgatcgta tcaatatcac acccagacaa ttctgcatgt attttgcaaa aattgtttgg 2100 aacatactgt tagacagcaa tgtgccacct gccaactggg caaaattggg ctatcaggaa 2160 gataccaagt ttgctgcttt tgacttcttt gatggagtca caaatccagc tagtctacag 2220 cctgcagatg gcctaatcag gcagcccaat gaaaaagagc ttgctgctca ctcggttgct 2280 aaatatggtg cccttgcccg ccagaaaata tccactggta actacatcac cacccttggt 2340 gaagttacac gtggtcacat gggcggcgcc aacactatgt acgcaattga tgcacctcct 2400 gaactttaaa cactcga 2417 //