ID   HE861732; SV 1; circular; genomic DNA; STD; VRL; 1159 BP.
XX
AC   HE861732;
XX
DT   19-JUN-2012 (Rel. 113, Created)
DT   19-JUN-2012 (Rel. 113, Last updated, Version 1)
XX
DE   Cotton leaf curl Shadadpur virus defective genome, clone NCD2
XX
KW   complete genome.
XX
OS   Cotton leaf curl Shahdadpur virus
OC   Viruses; Geminiviridae; Begomovirus; unclassified Begomovirus.
XX
RN   [1]
RP   1-1159
RA   Tahir M.N.;
RT   ;
RL   Submitted (11-JUN-2012) to the INSDC.
RL   Tahir M.N., National Institute for Biotechnology &, Genetic Engineering,
RL   Agricultural Biotec, NIBGE, Jhang Road, Faisalabad, Punjab, 38000,
RL   PAKISTAN.
XX
RN   [2]
RA   Tahir M.N., Briddon R.W., Mansoor S.;
RT   "Diversity among natural deletion mutants of cotton begomoviruses";
RL   Unpublished.
XX
DR   MD5; a7b2055f27abf4a6a2c647e2e7645a5e.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1159
FT                   /organism="Cotton leaf curl Shahdadpur virus"
FT                   /host="Gossypium hirsutum"
FT                   /mol_type="genomic DNA"
FT                   /country="Pakistan:Tando Adam, Sindh"
FT                   /isolation_source="host leaf"
FT                   /collection_date="2007"
FT                   /clone="NCD2"
FT                   /db_xref="taxon:674996"
FT   CDS             complement(575..850)
FT                   /gene="C4"
FT                   /product="truncated C4 protein"
FT                   /db_xref="InterPro:IPR002488"
FT                   /db_xref="UniProtKB/TrEMBL:I7KXR4"
FT                   /protein_id="CCI69934.1"
FT                   /translation="MGLLTCMFSSSSKGNSSARICDSSTWSPQAGQHISIRTYRELNPA
FT                   PTSNPTSTRTGTLSSGESFRSTEGQQEEGNRQPMTLTPLRSHFFHK"
XX
SQ   Sequence 1159 BP; 317 A; 208 C; 265 G; 369 T; 0 other;
     accggatggc cgcgcgattt ttttgtgggc cctaccatta actcttgtcg gccaatcata        60
     tgacgcgctc aaagcttaaa taattctccc gcctattata agtacttcgt tgctaagtat       120
     gcgtttgaaa aatgtgggat ccactgttaa atgagttccc cgacaccgtt cacggtttta       180
     gcgatggtga ctttgtggat agtatcctca tgtgaatgag gatcttcata ttctccatga       240
     tgcgaacgtc gactatgaac ctgactccct tcttgtttgt tccgctcgtt gtcatttctg       300
     cttatttgat ggaattgttt agtgtgcatg catttataga cttaatgaat agatattttg       360
     tgtagttgtg tggttgtgag tgatttatta ttatgtgatt gtccattaaa gggataaagt       420
     gatgattgag acgtattaca cgtgttgtca tgttggcttg aaatctttat acatgggttt       480
     gtaccgtata tacatatata tacggataga aaacggatga gaaaaggaaa aacggaactg       540
     aagaggaaaa acaaagaaaa gaaacaagga tatattattt atgaaagaaa tgggagcgca       600
     gcggcgtaag cgtcattggc tgtctgttgc cctcctcttg ctgaccttcc gtcgatctga       660
     aactctcccc actcgagagt gtccccgtcc ttgtcgatgt aggatttgac gtcggagctg       720
     gatttagctc cctgtatgtt cggatggaaa tgtgttgacc tgcttgggga gaccaagtcg       780
     aagaatcgca tattctggca cttgaatttc ccttcgaact ggatgagaac atgcaagtga       840
     ggagtcccat cttcgtgaag ctctctgcag attctaatat atttttttga agttggggtt       900
     tgtatattta ataactggga aagtgcttcc tctttggtga gagaacattt gggataagtg       960
     atgaaatagt ttttggaata aataccgttc cgctttggag gcatgttgac taaaattgat      1020
     caccgattga ccgcacttgc aactctcccc ggtatatcgg tgatcaatat atagtgatca      1080
     ccaaatggca taatggtaat aaaaaaactt taatttgaaa ttcaaaccaa aaggctaaag      1140
     cggccatccg tttaatatt                                                   1159
//