ID HM140369; SV 1; circular; genomic DNA; STD; VRL; 2736 BP. XX AC HM140369; XX DT 19-NOV-2010 (Rel. 106, Created) DT 04-JUL-2012 (Rel. 113, Last updated, Version 3) XX DE Papaya leaf crumple virus-Najafgarh 1 [India:New Delhi:Papaya:2008], DE complete genome. XX KW . XX OS Papaya leaf crumple virus-Najafgarh 1 [India:New Delhi:Papaya:2008] OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2736 RX PUBMED; 22437254. RA Singh-Pant P., Pant P., Mukherjee S.K., Mazumdar-Leighton S.; RT "Spatial and temporal diversity of begomoviral complexes in papayas with RT leaf curl disease"; RL Arch. Virol. 157(7):1217-1232(2012). XX RN [2] RP 1-2736 RA Singh P., Mukherjee S.K., Mazumdar-Leighton S.; RT ; RL Submitted (21-APR-2010) to the INSDC. RL Botany, Delhi University, Chattra Marg, New Delhi, Delhi 110007, India XX DR MD5; a9f9b9025b9c09132727322bd1d12ea3. DR EuropePMC; PMC5377872; 28466050. XX FH Key Location/Qualifiers FH FT source 1..2736 FT /organism="Papaya leaf crumple virus-Najafgarh 1 [India:New FT Delhi:Papaya:2008]" FT /segment="DNA-A" FT /host="Carica papaya" FT /isolate="Naj1 [IN:ND:Pap:08]" FT /mol_type="genomic DNA" FT /country="India:New Delhi" FT /isolation_source="leaf" FT /collection_date="Nov-2007" FT /db_xref="taxon:913602" FT gene 120..458 FT /gene="AV2" FT CDS 120..458 FT /codon_start=1 FT /gene="AV2" FT /product="AV2 protein" FT /note="pre-coat protein" FT /db_xref="GOA:E5F1M2" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:E5F1M2" FT /protein_id="ADQ13219.1" FT /translation="MWDPLLNEFPETVHGFRCMLAVKYLQLVENTYSPDTLGYDLIRDL FT ISVIRARNYVEATSRYHHFNARLEGTPPSQLRQPICEPCCCPHCPRHKSKGLDQQAHEP FT KAQDVQDV" FT gene complement(258..548) FT /gene="AC5" FT CDS complement(258..548) FT /codon_start=1 FT /gene="AC5" FT /product="AC5 protein" FT /db_xref="GOA:E5F1M3" FT /db_xref="UniProtKB/TrEMBL:E5F1M3" FT /protein_id="ADQ13225.1" FT /translation="MTFPMCWISCLDSNDWTLHGPSQPLGTSGLLYILYILGFRFMGLL FT VQALAFVTRTMGAAARLAYGLSKLRRRRTFEAGVEMMISAGRFDIIPSPNN" FT gene 280..1050 FT /gene="AV1" FT CDS 280..1050 FT /codon_start=1 FT /gene="AV1" FT /product="AV1 protein" FT /note="coat protein; encapsidation/insect transmission" FT /db_xref="GOA:E5F1M4" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:E5F1M4" FT /protein_id="ADQ13220.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYASRAAAPIVRVTKARAWT FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDIQHIGKVMCVSDVTRGIGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVVFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNVHRDRYQVLRKWHATVTGGLYASKEQALVKKFIRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPAYATLKIRIYFYDSVSN" FT gene complement(1047..1451) FT /gene="AC3" FT CDS complement(1047..1451) FT /codon_start=1 FT /gene="AC3" FT /product="AC3 protein" FT /note="replication enhancer protein" FT /db_xref="GOA:E5F1M5" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:E5F1M5" FT /protein_id="ADQ13221.1" FT /translation="MDSRTGESITAAQAMNGVYIWETPNPLYFKILNHDQRPLNMNHDI FT IDIRVQFNHNLRKRLGIMNCFLGLRIHTRLHLQTWHFLRVFKTQVLRYLDSLGVISINN FT CIKAFRHVLYDVLEGTINVIEDHDIKFNIY" FT gene complement(1192..1599) FT /gene="AC2" FT CDS complement(1192..1599) FT /codon_start=1 FT /gene="AC2" FT /product="AC2 protein" FT /note="transcription activator protein" FT /db_xref="GOA:E5F1M6" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:E5F1M6" FT /protein_id="ADQ13222.1" FT /translation="MQHSSPSQSHCTQVPIKVQHRLAKRRAIRRKRVDLECGCSYYVHI FT NCHNHGFTHRGIHHCSSSNEWRVYLGNPKSPLFQDPQPRPKATQHEPRHHRHQGPVQSQ FT PQEETGDNELFLGLEDPHSFTSSDLAFLKSL" FT gene complement(1523..2587) FT /gene="AC1" FT CDS complement(1523..2587) FT /codon_start=1 FT /gene="AC1" FT /product="AC1 protein" FT /note="replication associated protein" FT /db_xref="GOA:E5F1M7" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:E5F1M7" FT /protein_id="ADQ13223.1" FT /translation="MAPPKRFQIYAKNFFLTYPKCSLTKEEALTQLQNLQTPVNKKYIK FT ICRELHENGEPHLHVLIQFEGKYKCQNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYM FT EKDGDTLDWGEFQIDGRSARGGQQSANDAYAKAINTGSKSGALRVIRELAPKDYVLQFH FT NLNANLDRIFALPMEVYVSPFLSSSFDQVPEAIEEWASENVMGPAARPLRPKSIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKIYSNDAWYNIIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEYLDEEKNSALRSWAIHNATFITLTEPL FT YSGTHQGPTQASQA" FT gene complement(2128..2436) FT /gene="AC4" FT CDS complement(2128..2436) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:E5F1M8" FT /protein_id="ADQ13224.1" FT /translation="MKMGNLIFTCSSSSKENTSAKITGSSTWYPQPGQHISIRTFRELS FT QAQMSSPIWRRMETPSTGESFRSMDDLQEGDNSQPMMLTPKQLIQAVSQGLLESLGN" XX SQ Sequence 2736 BP; 721 A; 562 C; 652 G; 801 T; 0 other; accggatggc cgcgcaaatt tttaggtggg ccctcaacca atgaaattca cgctacatgg 60 cctatttagt gcggggggac caataaatag acttgctcac caagtttgta tctacaaaca 120 tgtgggaccc actattgaat gagtttccag aaactgttca tgggtttagg tgcatgttgg 180 cagtgaaata cctccagcta gtagaaaata cgtattcccc agacactctg ggatacgatt 240 taattaggga tttaatttca gttattaggg ctcggaatta tgtcgaagcg accagcagat 300 atcatcattt caacgcccgc ctcgaaggta cgccgccgtc tcaacttcga cagcccatat 360 gcgagccgtg ctgctgcccc cattgtccgc gtcacaaaag caagggcctg gaccaacagg 420 cccatgaacc gaaagcccag gatgtacagg atgtatagga gcccagatgt tccaaggggc 480 tgtgaaggcc cgtgtaaggt ccagtcattt gagtccagac atgatatcca gcacattggg 540 aaagtcatgt gtgttagtga tgttactcgt ggtattgggc tgacccacag ggttggcaag 600 aggttctgtg tgaagtccgt ctatgtattg ggcaagattt ggatggatga gaacatcaag 660 actaagaatc atacgaatag tgttgtgttt ttccttgtta gggatcgtag gcctgttgac 720 aagcctcaag attttggtga ggtttttaac atgtttgata atgagcccag cacggcgact 780 gtgaagaatg ttcatcgtga cagatatcag gtgttaagga agtggcatgc cactgtgaca 840 ggcggtttat acgcatcgaa ggagcaggct ctcgtgaaga agtttattag ggtcaataat 900 tatgttgtgt acaaccagca agaggctggc aagtatgaga atcatactga gaatgcattg 960 atgttgtata tggcgtgtac gcacgcctct aaccccgcgt atgccacttt gaagatacgg 1020 atctacttct atgattcagt atcgaattaa taaatattga attttatatc atgatcctca 1080 attacattaa ttgtgccctc aagtacatca tataatacat gtctgaaagc cttaatacaa 1140 ttatttatac taattacgcc taaactatct aaatatctta aaacttgagt cttaaagact 1200 cttaagaaat gccaagtctg aagatgtaaa cgagtgtgga tcctcaagcc caagaaacaa 1260 ttcattatcc ccagtctctt cctgaggttg tgattgaact ggaccctgat gtcgatgatg 1320 tcgtggttca tgttgagtgg cctttggtcg tggttgagga tcttgaaata gaggggattt 1380 ggggtttccc agatatacac gccattcatt gcttgagctg cagtgatgga ttcccctgtg 1440 cgtgaatcca tggttgtggc agttgatgtg tacgtagtat gagcagccac actcgaggtc 1500 aaccctctta cgccggatgg ctctacgctt ggctagcctg tgttggacct tgatgggtac 1560 ctgagtacag tggctctgtg agggtgatga atgttgcatt atgtatagcc cacgacctca 1620 gtgctgagtt cttttcctca tcgaggtatt ctttatagct ggaattgggc ccaggattgc 1680 agaggaagat agtgggaata cctcctttaa tttgaactgg tttcccgtac ttggtgttac 1740 tttgccagtc cctctgggcc cccatgaact ctttaaaatg ctttaggtag tgggggtcta 1800 cgtcatcaat gatgttatac catgcatcat ttgaatatat cttgggactc agatctaaat 1860 ggccacacag gtaattgtgt ggtcccaaag acctggccca cattgtcttg cccgtacgac 1920 tatcaccctc aatgacgata cttttaggtc tcaatggccg cgcagcggga cccatcacat 1980 tttcagaggc ccattcctct atggcctctg gaacttgatc gaaggaagat gaaagaaaag 2040 gggaaacata aacctccatt ggaagtgcaa aaatcctatc taaattagca ttaagattat 2100 gaaattgtaa gacataatcc tttggggcta attccctaat gactctaaga gcccctgact 2160 tactgcctgt attaattgct ttggcgtaag catcattggc tgactgttgt ccccctcttg 2220 cagatcgtcc atcgatctga aactctcccc agtcgagggt gtctccatcc ttctccatat 2280 aggacttgac atctgagctt gacttagctc cctgaatgtt cggatggaaa tgtgctgacc 2340 tggttgggga taccaggtcg aagaacctgt tattttggca cttgtatttt ccttcgaact 2400 ggatgagcac gtgaagatga ggttccccat tttcatggag ctctctgcag atttttatgt 2460 attttttatt tactggggtt tgtaggttct gaagttgggt gagtgcctct tctttagtaa 2520 gagagcattt tggataagtg agaaagaaat ttttggcata tatttgaaaa cgcttgggag 2580 gagccattga cttggtcaat cggtactcag cactagtcct atggcaattg gtgatcagta 2640 ctcaatatat agtgagtacc aaatggcaga attgtaattt ggaaaagaaa attactttaa 2700 ttcaaattcc cataaagcgg ccatccgtat aatatt 2736 //