ID   HM346943; SV 1; linear; genomic RNA; STD; VRL; 1677 BP.
XX
AC   HM346943;
XX
DT   03-FEB-2011 (Rel. 107, Created)
DT   23-MAR-2011 (Rel. 108, Last updated, Version 2)
XX
DE   Cassava brown streak virus isolate Shirazi6-2 polyprotein gene, partial
DE   cds.
XX
KW   .
XX
OS   Cassava brown streak virus
OC   Viruses; Riboviria; Potyviridae; Ipomovirus.
XX
RN   [1]
RP   1-1677
RX   DOI; 10.1099/vir.0.026922-0.
RX   PUBMED; 21169213.
RA   Mbanzibwa D.R., Tian Y.P., Tugume A.K., Patil B.L., Yadav J.S.,
RA   Bagewadi B., Abarshi M.M., Alicai T., Changadeya W., Mkumbira J.,
RA   Muli M.B., Mukasa S.B., Tairo F., Baguma Y., Kyamanywa S., Kullaya A.,
RA   Maruthi M.N., Fauquet C.M., Valkonen J.P.;
RT   "Evolution of cassava brown streak disease-associated viruses";
RL   J. Gen. Virol. 92(Pt 4):974-987(2011).
XX
RN   [2]
RP   1-1677
RA   Abarshi M.M., Maruthi M.N.;
RT   ;
RL   Submitted (20-MAY-2010) to the INSDC.
RL   Natural Resources Institute, University of Greenwich, Blake Building,
RL   Central Avenue, Chatham Maritime, Kent 44, England
XX
DR   MD5; a67b97ae8e324de1610a409c078f0946.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1677
FT                   /organism="Cassava brown streak virus"
FT                   /host="Manihot esculenta"
FT                   /isolate="Shirazi6-2"
FT                   /mol_type="genomic RNA"
FT                   /country="Kenya:Shirazi"
FT                   /collection_date="Oct-2008"
FT                   /db_xref="taxon:137758"
FT   CDS             <1..1479
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:E9KZD1"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="InterPro:IPR002637"
FT                   /db_xref="InterPro:IPR029001"
FT                   /db_xref="UniProtKB/TrEMBL:E9KZD1"
FT                   /protein_id="ADW23655.1"
FT                   /translation="GPYIKWFLKELGLDGVVKMLSAFGDKSAYALCTFAYVHNELSDPI
FT                   VFKGVVNGEIVPPRGSNGFGWDPIFKPDGCGCTFAEMPSSIKNDFSHRRRALEKVKLFL
FT                   DNLVVKQEEKKARVALTIDVQALNQEEIEAEITALKKLWKDNGPTRTRSPFEARRLRAP
FT                   QVERVNELLQKLKDEGLQTKKRPCGEPDDGEVVDDDSDDGNNQRSGKEVADESQNNQQV
FT                   DPRKPKFKIRGDGSVTRRDDIDKIPTNALEIKKTFKPPKVSQSAYIWIPRSQRDNLTPD
FT                   VIQNFLAYIPPSHAIDNQLASGIEVENWAIEVAKAYGVNIQEFYRTILPAWIVNCIVNG
FT                   TSDERKNEKSWRAVELNSQGEDVDDFEYPMEPMYKFALPTMRKIMRNFSSQAILMYQNS
FT                   VAAGKAFVIKAARNAGYTSIENKWLGIDFLAEAQLSQSQLDIKHQILAANVGRTKTRLF
FT                   ALAAPGDDGNVDKERHTTYDVSANRHSYSGAAIE"
FT   mat_peptide     376..1476
FT                   /product="coat protein"
XX
SQ   Sequence 1677 BP; 547 A; 251 C; 412 G; 467 T; 0 other;
     gggccataca tcaaatggtt tttaaaagaa ttgggtcttg atggtgttgt caaaatgctg        60
     tcagcatttg gagataaatc agcgtacgca ttatgtacat tcgcatatgt gcacaatgag       120
     ttatctgatc caattgtgtt caaaggagtt gtgaatggtg agattgtgcc accaagaggt       180
     agtaatggtt ttggctggga tcctatcttt aagcctgatg gatgtggttg tacgttcgca       240
     gaaatgccaa gcagcattaa gaatgatttt tctcacagaa gaagagcttt agagaaagtc       300
     aaattgtttc ttgataactt ggtggtgaag caagaggaga agaaagcaag ggtggctcta       360
     acaattgatg ttcaggcctt aaatcaggag gaaatagaag cagaaattac tgctttaaag       420
     aagctgtgga aagataatgg gccgacaaga acgcgtagtc catttgaggc taggagattg       480
     agagccccac aagttgagcg tgtaaatgag ttgcttcaga agctgaaaga tgaaggactg       540
     caaacaaaga agaggccatg tggagaacca gatgatgggg aagtggtaga tgatgatagc       600
     gatgatggta acaatcagag atccggaaag gaagttgctg acgagagcca gaataatcag       660
     caagttgatc caagaaagcc gaaattcaaa attaggggag atggaagtgt tactagacgg       720
     gatgacattg acaaaattcc aactaatgct cttgagatca agaagacgtt caagcctcca       780
     aaggtatcac agtcagctta catttggatt ccacgctctc aaagggataa tctaacccct       840
     gatgttattc agaatttcct ggcatatata cctccatctc atgctataga taaccaactt       900
     gcttcaggaa ttgaagttga aaattgggca attgaggttg ctaaagcata tggagttaat       960
     atacaggaat tttatcgcac aattttgcca gcttggatag taaactgtat agtgaatggc      1020
     actagcgatg aaaggaaaaa tgagaagtca tggcgagcag tcgagttgaa ttctcagggg      1080
     gaggatgttg atgattttga gtatccaatg gagccaatgt acaaatttgc attgccaact      1140
     atgaggaaga ttatgagaaa cttttctagt caagctatcc tcatgtatca gaatagtgtc      1200
     gctgcaggaa aggcgtttgt gataaaagct gctagaaatg ctggatacac aagtattgaa      1260
     aacaaatggc taggtataga ttttctcgcc gaagctcaat tgtctcaaag tcaacttgat      1320
     atcaagcatc agattctggc agcaaatgtt ggtaggacaa agacaaggct gtttgcatta      1380
     gcagctcctg gggatgatgg caatgtagat aaagaaaggc atacgacata cgatgtcagt      1440
     gcaaacaggc acagttatag tggtgccgca attgaataaa taaaatatta gtgtttctaa      1500
     ttaggtttaa gtgagattat agcttagttg gaaagctaag ctatatttca aatttgaatt      1560
     taattactta aatatcgtat tttattttca agtttggtgg agttttggat agccaattat      1620
     attttggttg ggtaagccaa aatgtatttt ggagatcttt ctccatatcc ttctgtt         1677
//