ID HQ009519; SV 1; circular; genomic DNA; STD; VRL; 2608 BP. XX AC HQ009519; XX DT 13-DEC-2010 (Rel. 107, Created) DT 02-AUG-2011 (Rel. 109, Last updated, Version 2) XX DE Sida golden yellow vein virus-[Jamaica:Liguanea2:2008] clone pLigA2 segment DE DNA-A, complete sequence. XX KW . XX OS Sida golden yellow vein virus-[Jamaica:Liguanea2:2008] OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2608 RX DOI; 10.1007/s00705-011-1030-z. RX PUBMED; 21625977. RA Stewart C.S., Kon T., Gilbertson R.L., Roye M.E.; RT "First report of the complete sequence of Sida golden yellow vein virus RT from Jamaica"; RL Arch. Virol. 156(8):1481-1484(2011). XX RN [2] RP 1-2608 RA Stewart C.S., Kon T., Gilbertson B.L., Roye M.E.; RT ; RL Submitted (02-AUG-2010) to the INSDC. RL The Biotechnology Centre, The University of the West Indies, Mona Road, RL Mona, St. Andrew Kgn 7, Jamaica XX DR MD5; 84e7a489f20729be8dfbafd948e2a384. XX FH Key Location/Qualifiers FH FT source 1..2608 FT /organism="Sida golden yellow vein FT virus-[Jamaica:Liguanea2:2008]" FT /segment="DNA-A" FT /host="Sida sp." FT /mol_type="genomic DNA" FT /country="Jamaica" FT /collection_date="2008" FT /clone="pLigA2" FT /db_xref="taxon:929766" FT misc_feature 15..2461 FT /note="IR; contains sequences essential to the initiation FT of replication" FT gene 183..938 FT /gene="CP" FT CDS 183..938 FT /codon_start=1 FT /gene="CP" FT /product="coat protein" FT /function="responsible for viral encapsidation" FT /db_xref="GOA:E5KBZ0" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:E5KBZ0" FT /protein_id="ADR77520.1" FT /translation="MTKRDSSWRSIGGTSKVRRTLNFSPRGGGGPKQTRASEWVNRPMY FT RKPLIYRTIRTPDVPRGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRF FT CVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMYDNEPSTATI FT KNDLRDRHQVMHRFYGKVTGGQYASNEQALVRRFWKVNNHVEYNHQEAGKYENHTENAL FT LLYMACTHASNPVYATLKIRIYFYDSITN" FT gene complement(935..1333) FT /gene="REn" FT CDS complement(935..1333) FT /codon_start=1 FT /gene="REn" FT /product="replication enhancer" FT /function="enhances replication" FT /db_xref="GOA:E5KBZ1" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:E5KBZ1" FT /protein_id="ADR77523.1" FT /translation="MVSRTGELITARQAENGVYIWEIENPLYFKIYWVEDQIYTRTRVY FT HIQIRFNHNLRRALGLHKAYLNFQVWTTSMTASGSTYLARFGQLVNEYLYQLGVIGINN FT VIRAVRFATAKPYVTHVLENHEIKFKFY" FT gene complement(1080..1469) FT /gene="TrAP" FT CDS complement(1080..1469) FT /codon_start=1 FT /gene="TrAP" FT /product="transcriptional activator protein" FT /function="may act as a gene silencing suppressor" FT /db_xref="GOA:E5KBZ2" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:E5KBZ2" FT /protein_id="ADR77522.1" FT /translation="MPNSSPSQPPSIKKAHRQSKRRAIRRRRIDLNCGCSIYFHINCTG FT HGFTHRGTHHCTSGREWRVYLGDRKSPLFQDILGRGPDIHQNQSVPHTDTIQPQPEESV FT GSPQSLPELPSLDDIDDSFWVNLFS" FT gene complement(1381..2466) FT /gene="Rep" FT CDS complement(1381..2466) FT /codon_start=1 FT /gene="Rep" FT /product="replication-associated protein" FT /function="responsible for replicating the genome" FT /db_xref="GOA:E5KBZ3" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:E5KBZ3" FT /protein_id="ADR77521.1" FT /translation="MPSIKRFKINAKNYFITYPGCSLTKEEALSQLLNLSTPVNKKFIK FT ICRELHQNGKPHLHVPMQFEGKYACKNNRFFDLASPTRSAHFHPNIQGAKSSSDVKSYI FT AKDGDTLEWGEFQIDGRSARGGCQSANDSYAKALNADSVESAMAVLKEEQPKDFVLQNH FT NIRANLERIFAKAPEPWSPPFPLSSFNAVPDEMQAWSDGYFGTDAAARPERPVSIIIEG FT DSRTGKTMWARALGPHNYLSGHLDFNSRVFSNEVEYNVIDDVAPQYLKLKHWKELLGAQ FT KDWQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKDFLNKEENTGLRNWTIKNAKFITLT FT APLYQEGTQAIQEAGNQEAQD" FT gene complement(2052..2309) FT /gene="AC4" FT CDS complement(2052..2309) FT /codon_start=1 FT /gene="AC4" FT /product="AC4" FT /function="may act in suppressing gene silencing" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:E5KBZ4" FT /protein_id="ADR77524.1" FT /translation="MGSLISMCPCNSRENMHARITDSSIWPPQPGQHISIQTYRELNPA FT PTSSPTSQRTEIHWNGENSRSTAEVLEEAASLLMIHMPRR" XX SQ Sequence 2608 BP; 634 A; 585 C; 619 G; 770 T; 0 other; accggatggc cgcgcgattt tttcgccctt tactttccac gcgcgctccg cttttctcac 60 tcgcgctatc gtccaatcat attgcgcctg ccgcgcttaa ttaattcaaa caacttgggc 120 cctaagttgt tgtctgggcc tataaaggaa aagcggattt gggccacatt ctttaattca 180 aaatgactaa gcgcgattca tcttggcgct cgattggtgg aacctcaaag gttcgtcgca 240 cgttgaattt ctccccacgt ggaggtggtg gcccaaaaca gacacgggcc tcagaatggg 300 ttaacaggcc tatgtacagg aagcccttga tctatcggac tatacgaacg cccgacgttc 360 ccagaggttg tgaaggcccg tgcaaggtcc agtcctatga acagcgtcat gatatctctc 420 acgtcgggaa ggtgatgtgt atttctgatg tcactcgtgg taatggtatt acccaccgtg 480 tgggtaagcg tttttgtgtt aagtctgtct atattttagg gaagatatgg atggatgaga 540 acatcaagct taagaaccac acgaacagtg tcatgttctg gttggtcagg gaccgtcgac 600 cctatggcac tcctatggat ttcggtcagg tgttcaacat gtatgacaat gagcctagta 660 cagctacgat caagaacgat ctccgtgatc gtcatcaggt tatgcacagg ttctatggta 720 aggtcacagg tggtcaatat gccagcaacg agcaagcttt ggttaggcga ttctggaagg 780 tcaacaatca tgtagagtac aaccatcaag aagctgggaa atacgagaat catacggaga 840 acgccttatt attgtatatg gcatgtactc atgcctctaa ccccgtgtat gcgacattga 900 aaattcggat ctatttttat gattcgataa caaattaata aaatttaaat tttatttcat 960 gattttcaag cacatgagtt acatatggtt tggctgttgc aaaacgaaca gctctaatta 1020 cattgtttat tccaattaca cctaattggt acaagtactc atttactaat tgtccaaatc 1080 tagctaaata agttgaccca gaagctgtca tcgatgtcgt ccaaacttgg aagttcaggt 1140 aggctttgtg gagacccaac gctctcctca ggttgtggtt gaatcgtatc tgtatgtggt 1200 acactctggt tctggtgtat atctggtcct ctacccagta tatcttgaaa tagaggggat 1260 tttctatctc ccagatatac acgccattct ctgcctgacg tgcagtgatg agttcccctg 1320 tgcgtgaaac catgtcccgt gcagttgatg tggaagtaaa tggagcaccc gcaatttaga 1380 tcaatcctgc gcctcctgat tgcccgcctc ttggattgcc tgtgtgcctt cttgatagag 1440 gggggctgtg agggtgatga atttggcatt cttgatggtc cagttcctga gacctgtgtt 1500 ttcctctttg ttcaggaaat ctttatagct ggcaccctca ccaggattgc aaagcacgat 1560 tgatgggatc cctcctttaa tttgaactgg cttgccgtat ttgcaatttg actgccagtc 1620 cttctgggcc cccagaagtt ctttccagtg ctttagcttt agatattgcg gtgcgacgtc 1680 atcaatgacg ttatattcca cttcatttga aaagacccgg gaattgaagt ctaagtgtcc 1740 actgagataa ttgtgtgggc ctaaggcacg agcccacatc gtcttccctg tcctcgagtc 1800 gccttcaatt atgatactca caggcctctc cggccgcgca gcggcatctg ttccaaaata 1860 accgtctgac catgcttgca tctcgtctgg aacggcattg aaagaggaga ggggaaacgg 1920 aggagaccat ggctccggag ccttagcgaa tatcctttct aagttggcac ggatgttatg 1980 attctgcaaa acgaaatctt ttggctgttc ttcttttaaa accgccatgg cagattcaac 2040 ggaatctgca tttaacgcct tggcatatga atcattagca gactggcagc ctcctctagc 2100 acttctgccg tcgatctgga attctcccca ttccagtgta tctccgtcct ttgcgatgta 2160 ggacttgacg tcggagctgg atttagctcc ctgtatgttt ggatggaaat gtgctgacct 2220 ggttggggag gccagatcga agaatctgtt attcttgcat gcatattttc cctcgaattg 2280 catgggcaca tggagatgag gcttcccatt ttgatggagc tctctgcaaa ttttgatgaa 2340 cttcttattc actggcgtgg agaggtttag caattgggaa agtgcctctt ctttggtgag 2400 ggagcagcct ggataagtga taaaatagtt tttggcattt attttgaaac gtttaatcga 2460 tggcattttt gtaataataa gggggtcacc gattgaggct ctctcaaact tgctctagca 2520 attggggaac ggggtctcat ttatacaaga agcctcaata gaactctcaa tctcgttcgc 2580 acacgtggcg gccatccgca ataatatt 2608 //