ID HQ393474; SV 1; circular; genomic DNA; STD; VRL; 2829 BP. XX AC HQ393474; XX DT 27-MAR-2011 (Rel. 108, Created) DT 14-NOV-2012 (Rel. 114, Last updated, Version 4) XX DE Sweet potato leaf curl virus isolate SPLCV-US[BR:AM3:09], complete genome. XX KW . XX OS Sweet potato leaf curl virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RC Publication Status: Online-Only RP 1-2829 RX PUBMED; 23082767. RA Albuquerque L.C., Inoue-Nagata A.K., Pinheiro B., Resende R.O., RA Moriones E., Navas-Castillo J.; RT "Genetic diversity and recombination analysis of sweepoviruses from RT Brazil"; RL Virol J 9:241-241(2012). XX RN [2] RP 1-2829 RA Albuquerque L.C., Inoue-Nagata A.K., Pinheiro B., Resende R.O., RA Ribeiro S.G., Moriones E., Navas-Castillo J.; RT "Genetic diversity by extensive recombination in the complex of monopartite RT begomoviruses infecting sweet potato in Brazil"; RL Unpublished. XX RN [3] RP 1-2829 RA Albuquerque L.C., Inoue-Nagata A.K., Pinheiro B., Resende R.O., RA Ribeiro S.G., Navas-Castillo J.; RT ; RL Submitted (11-OCT-2010) to the INSDC. RL Virology, Embrapa Vegetables, Km 09, BR060, Brasilia, DF 70359-970, Brazil XX DR MD5; c612f5329ba25351840303cdcb81ca05. DR EuropePMC; PMC3485178; 23082767. XX FH Key Location/Qualifiers FH FT source 1..2829 FT /organism="Sweet potato leaf curl virus" FT /host="Ipomoea batatas" FT /strain="USA" FT /isolate="SPLCV-US[BR:AM3:09]" FT /mol_type="genomic DNA" FT /country="Brazil:Sao Paulo" FT /lat_lon="21.59 S 51.25 W" FT /collected_by="Amarilis Ros Golla" FT /collection_date="2009" FT /clone="SP88Bam6" FT /db_xref="taxon:100755" FT CDS 126..470 FT /codon_start=1 FT /product="V2" FT /db_xref="GOA:F2X8X3" FT /db_xref="InterPro:IPR002511" FT /db_xref="UniProtKB/TrEMBL:F2X8X3" FT /protein_id="ADZ96663.1" FT /translation="MEQLWDPLQNPLPDTLYGFRCMLSVKYLQSILKKYEPGTLGFELC FT SELIRIFRVRQYDRANSRFAEISSIWGETGKTEAELRDSYRALHWECCPNCCPKLCPGF FT KRRPDEEKEG" FT CDS 295..1059 FT /codon_start=1 FT /product="V1" FT /note="CP" FT /db_xref="GOA:D4HSB4" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:D4HSB4" FT /protein_id="ADZ96664.1" FT /translation="MTGRIPVSRRFHPYGGRPVRRRLNFETAIVPYTGNAVPIAARSYV FT PVSRGVRMKRRRGDRIPKGCVGPCKVQDYEFKMDVPHTGTFVCVSDFTRGTGLTHRLGK FT RVCVKSMGIDGKVWMDDNVAKRDHTNIITYWLIRDRRPNKDPLNFGQIFTTYDNEPTTA FT KIRMDLRDRMQVLKKFSVTVSGGPYSHKEQALIRKFFKGLYNHVTYNHKEEAKYENQLE FT NALMLYSASSHASNPVYQTLRCRAYFYDSHNN" FT CDS complement(1075..1509) FT /codon_start=1 FT /product="C3" FT /note="REn" FT /db_xref="GOA:J9PEQ2" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:J9PEQ2" FT /protein_id="ADZ96665.1" FT /translation="MDSRTGESLSHAQTTRALEFDTNPMSVGRTAPFHLRIMYVPRGKQ FT GRTILKFQLRVNYRERRQLGFHKIFLQFRILTTRLTGAIHSWTGILERLKWRICNELAN FT LGFFSLVNLVFVVRYLPRVCSWIDEVDTVDCNDDVKILLY" FT CDS complement(1226..1672) FT /codon_start=1 FT /product="C2" FT /note="Trap" FT /db_xref="GOA:J9PEY1" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:J9PEY1" FT /protein_id="ADZ96666.1" FT /translation="MSNPLSGYKRKCPIQEPLHTEAKKAKRKVPEQRTRIVWKGCGCSA FT FITTTCKYQHGFTHRGITKSCSDYESTRIRHQPHVCGSDCTVPSQNYVCPERQTGENHP FT QIPAEGQLQGKEATGIPQDLPPIPDLDDPSNWCYSQLDWYFGTP" FT CDS complement(1581..2675) FT /codon_start=1 FT /product="C1" FT /note="Rep" FT /db_xref="GOA:J9PEJ8" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:J9PEJ8" FT /protein_id="ADZ96667.1" FT /translation="MAPPKRFKIQAKNYFITYPRCSLSKEDCLAQLLNIQTPTNKKYIH FT VARELHEDGEPHLHVLVQFEGKFVCTNSRFFDLVSPNRSNHFHPNIQGAKSSSDVKSYV FT DKDGDTITWGEFQVDGRSARGGQQTANDAAAEALNAGSKEAALQIIREKLPEKYLFQFH FT NLVSNLDRIFSPPPSVYSSPFSSSSFNAVPDIISDWAAENVMDSAARPDRPISIVIEGP FT SRIGKTVWARSLGPHNYLCGHLDLSPKVYSNSAWYNVIDDVNPQYLKHFKEFMGAQKDW FT QSNCKYGKPVQIKGGIPTIFLCNPGEGSSFKLWLDKPEQGALKNWATANAIFCDVQSPF FT WVQEEVSHSGATAHGGEEGQEESS" FT CDS complement(2261..2518) FT /codon_start=1 FT /product="C4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:D4HSC4" FT /protein_id="ADZ96668.1" FT /translation="MGNLTSMCWCSSKANSSAQIADSSIWSHRTDRITFTPTSRELNPR FT PMSSPTLTRTGIPSPGVNSRSTADLLEEASRLLMTQPQRL" XX SQ Sequence 2829 BP; 739 A; 605 C; 684 G; 801 T; 0 other; accggtgccc gccgcgccct tttaacgtgg gccccacaat gggaccacgc gtctttgccg 60 tactgtcttt aatgattact ttgctttata aggaccaatc aggtttccgt gcttgggcgc 120 caagaatgga gcagttgtgg gaccctttgc agaacccact cccggatact ttatacggtt 180 ttaggtgtat gctatccgta aaatacttgc agagtatttt gaagaaatac gagccaggaa 240 ccttagggtt cgagctctgt tcggagttaa tccgtatatt cagggtcagg cagtatgaca 300 gggcgaattc ccgtttcgcg gagatttcat ccatatgggg ggagaccggt aagacggagg 360 ctgaacttcg agacagctat cgtgccctac actgggaatg ctgtcccaat tgctgcccga 420 agctatgtcc cggtttcaag aggcgtccgg atgaagagaa ggaggggtga ccgcatcccg 480 aagggatgtg tcggtccctg taaggtccag gactatgagt tcaagatgga cgttccccac 540 acgggaacgt ttgtctgtgt ctcggatttt actaggggaa ctgggcttac ccatcgcctg 600 ggtaagcgtg tttgtgtgaa gtccatgggt atagatggta aggtctggat ggatgacaat 660 gtggccaaga gagatcacac caatatcatc acgtattggc tgattcgtga caggaggccc 720 aataaggatc cgcttaactt tggccagatc ttcacgacgt acgacaatga gcccactact 780 gctaagatcc gaatggattt gagagataga atgcaggtct tgaagaagtt ctcggttaca 840 gtttcaggag gtccatacag ccacaaggag caggccttaa ttaggaagtt ttttaagggt 900 ttgtataatc atgttactta caatcacaag gaagaagcta agtatgagaa tcaattagag 960 aatgcactta tgttgtatag tgctagtagt catgctagta atcccgtgta tcagaccctg 1020 cgttgcaggg cttatttcta tgattcgcac aataattaat aaaattatat tttattaata 1080 gagtaatatc tttacatcat cattacaatc tacagtatct acttcatcta tccaagaaca 1140 tactcttgga agatatctaa caacgaaaac taaattaact aaactaaaaa atcctaaatt 1200 tgctaattca ttacatatac gccatttaag gcgttccaaa ataccagtcc aactgtgaat 1260 agcaccagtt agacgggtcg tcaagatccg gaattggagg aagatcttgt ggaatcccag 1320 ttgcctcctt tccctgtagt tgaccctcag ctggaatttg aggatggttc tcccctgttt 1380 gcctctcggg acatacataa ttctgagatg gaacggtgca gtccgaccca cagacatggg 1440 gttggtgtcg aattctagtg ctctcgtagt ctgagcatga cttagtgatt cccctgtgcg 1500 tgaatccatg ctggtacttg caggttgtgg tgatgaaggc tgaacagccg caacccttcc 1560 acactatcct cgtcctctgt tcaggaactt tcctcttggc cttcttcgcc tccgtgtgca 1620 gtggctcctg aatgggacac ttcctcttgt acccagaaag gggattggac atcgcagaat 1680 atagcgtttg ctgttgccca atttttgagt gctccttgct ctggtttgtc caaccagagt 1740 ttaaatgagg agccctctcc tggattgcag aggaagatag tgggaattcc acctttaatt 1800 tgaactggct ttccgtattt acagttggat tgccagtcct tctgggcccc catgaattcc 1860 ttaaagtgct ttaggtattg ggggttgacg tcatcaatga cgttatacca agcactgtta 1920 ctgtatactt tagggcttag atctaaatgc ccacacaaat aattatgagg ccccaaagac 1980 ctggcccata ctgttttgcc tattctgctt gggccttcaa taacaatgga tatgggtcta 2040 tccggccgcg cagcggaatc catgacattt tcagcggccc agtcgctgat aatgtcagga 2100 acggcattga aagaagaaga tgaaaaagga gaagaatata cagaaggagg aggagaaaaa 2160 atcctatcta aattactaac taaattgtga aattgaaaca aatatttttc aggaagtttc 2220 tccctaatta tttgcaacgc agcttcttta gaacctgcgt ttagagcctc tgcggctgcg 2280 tcattagcag tctgctggcc tcctctagca gatctgccgt cgacctggaa ttcaccccag 2340 gtgatggtat ccccgtcctt gtcaacgtag gacttgacat cggacgagga tttagctccc 2400 tggatgttgg ggtgaaagtg attcgatctg ttcggtgaga ccagatcgaa gaatctgcta 2460 tttgtgcaga cgaatttgcc ttcgaactgc accagcacat ggaggtgagg ttccccatcc 2520 tcgtgcagtt ctcttgctac gtgtatgtat tttttgttgg tgggtgtttg gatatttagg 2580 agttgggcta ggcagtcctc ttttgagaga gaacagcgtg gataagtaat aaaataattt 2640 ttggcctgaa ttttaaaacg ttttggagga gccatttgga gacacgcata agttcaaatg 2700 aattggagac tggagacaat atatagtatg tctccaaatg gcattctggt aatttagaag 2760 atccttttag ctttaattca aattccgaca actctgggtc caccaaaagg cgggcaccgt 2820 attaatatt 2829 //