ID HQ611267; SV 1; linear; genomic RNA; STD; VRL; 2772 BP. XX AC HQ611267; XX DT 26-JUN-2011 (Rel. 109, Created) DT 17-AUG-2011 (Rel. 109, Last updated, Version 2) XX DE Cowpea chlorotic mottle virus isolate Car1 segment RNA2, complete sequence. XX KW . XX OS Cowpea chlorotic mottle virus OC Viruses; Riboviria; Bromoviridae; Bromovirus. XX RN [1] RP 1-2772 RX DOI; 10.1007/s11262-011-0613-9. RX PUBMED; 21537997. RA Ali A., Shafiekhani M., Olsen J.; RT "Molecular characterization of the complete genomes of two new field RT isolates of Cowpea chlorotic mottle virus, and their phylogenetic RT analysis"; RL Virus Genes 43(1):120-129(2011). XX RN [2] RP 1-2772 RA Ali A., Shafiekhani M., Olsen J.; RT ; RL Submitted (15-NOV-2010) to the INSDC. RL Biological Science, University of Tulsa, 800 S Tucker Dr, Tulsa, OK 74104, RL USA XX DR MD5; 0c58740fcba9be3f6b9bc69abe5a3363. DR RFAM; RF01084; TLS-PK3. XX CC GenBank Accession Numbers HQ611266-HQ611268 represent the complete CC genome of Cowpea chlorotic mottle virus isolate Car1. XX FH Key Location/Qualifiers FH FT source 1..2772 FT /organism="Cowpea chlorotic mottle virus" FT /segment="RNA2" FT /host="cowpea" FT /isolate="Car1" FT /mol_type="genomic RNA" FT /country="USA" FT /proviral FT /db_xref="taxon:12303" FT CDS 108..2534 FT /codon_start=1 FT /product="2a protein" FT /db_xref="GOA:F8S8P9" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR007610" FT /db_xref="UniProtKB/TrEMBL:F8S8P9" FT /protein_id="AEI54609.1" FT /translation="MSKFIPEGETYHIPSFQWMFDQTLESDSHHDEAIFVTESINESGV FT DTSVEITADGTLASYMHAVKPLEEDGLLNPPFDQARWGLCCKNVVDVYDGLLGYRLIPM FT AEAARMLYLEIDGSFVDESECDDWRPVDTSDGFTEAMFDVMNEIPGEETKHTCALSLEA FT ESRQAPETSDMVPSEYTLADRYVTTREEFASIDSDYDISLNLVSPVEFRVGVCEDTYRH FT SEADDPTMPQYHDRISLKSLEAAGHHMLPTHAYFDDTYYQALEELGDYNVDISKLSVRQ FT SDVDWYRDPEKYYEPELSIGSFQRRIGTQKTVLTALKKRNADVPELADSVDIKRVACEV FT AEKFKRAYLNHSGIGLLGQSMDVMSRGLEYHKKWKDHKDLTGVTVLSEINLQRYQHMIK FT SDIKPVVSDTLHLERAVAATITFHGKGVTSCFSPYFTACFEKFSKALKSRFVVPIGKIS FT SLELKNVPLSNKWFLEADLSKFDKSQGELHLEFQREILLSLGFPAPLTNWWCDFHRESM FT LSDPHAGVNMPVSFQRRTGDAFTYFGNTLVTMAMMAYCCDMDAVDCAIFSGDDSLLICK FT SKPHLDANVFQSLFNMEIKVMDPSLPYVCSKFLLETEMNNLVSVPDPMREIQRLAKRKI FT IKSPELLRAHFESFCDRMKFLNKLDEKMINLLCKFVALKYKKPDVENDVRVAIAAFGYY FT SENFLRFCECYATEGVNIYKVKHPITQEWFEASRDRDGDWFHDWRNPKFPTALDKVWRF FT FGKYAKDDPMKHIEERDRGHRLNRAMNSSLKLAYDRRSLSKDKEAVAWVRKTLSK" XX SQ Sequence 2772 BP; 778 A; 535 C; 653 G; 806 T; 0 other; gtaatccacg agaacgaggt tcaatccctt gtcgactcac ggagttccat cagttgaaaa 60 cagtttatac ttttcatctt gatattattt tctttacttc cattaatatg tctaagttca 120 ttccagaagg tgagacttac cacattccct cattccaatg gatgtttgat cagactctcg 180 aatctgactc acaccatgat gaggcgatat tcgtaacaga atcgattaat gaaagtggag 240 ttgatacttc tgttgaaata accgcagacg gcacgcttgc aagttacatg cacgccgtaa 300 agcccctaga ggaggatggt cttctgaacc ctccttttga tcaagctaga tggggtcttt 360 gctgcaagaa cgtcgttgac gtttatgacg ggctgctcgg ttatagactc ataccaatgg 420 ctgaagccgc taggatgtta tacttagaaa ttgacggttc tttcgtcgat gaatctgagt 480 gtgacgactg gcgaccggta gatacctctg atggttttac cgaagcaatg tttgatgtga 540 tgaatgagat tcctggcgag gaaacaaaac atacatgcgc tttaagtctt gaagctgaat 600 caaggcaagc tccagaaact tccgatatgg taccgtctga atatacgttg gcagataggt 660 acgttaccac cagagaggaa ttcgcgtcta tagattcgga ttatgacata tccttaaacc 720 tggtgagccc tgtggagttc agggtgggag tgtgtgaaga cacataccgt cattcggaag 780 ctgatgatcc tacgatgcct caatatcacg ataggatcag tttaaaatcg ctggaggcgg 840 ctggccatca catgttaccg actcatgcct attttgacga cacttactac caggcgttgg 900 aagagctagg cgactataat gtcgatatta gtaagttgtc ggtccggcag agtgatgttg 960 attggtatcg agaccctgaa aagtactatg agcccgagtt aagtataggg tcattccaac 1020 gtaggatagg tacacaaaag acggtcctta ccgcgctgaa gaaacggaac gctgacgtac 1080 ctgagttagc tgattctgtt gatatcaaaa gagtagcctg tgaagtagct gaaaaattta 1140 aacgggctta tctcaatcat tccggtatag ggctgttagg gcaaagtatg gatgtcatgt 1200 ccagaggact tgagtaccat aaaaaatgga aagatcacaa agacctgact ggtgtgacag 1260 ttttgtctga aatcaatttg cagaggtatc agcacatgat aaagtctgat atcaaaccag 1320 ttgtttcgga tacgttacac ctcgaacgag ctgttgctgc aactataacg tttcatggta 1380 aaggagttac tagctgcttc tcaccatatt tcacggcttg tttcgagaag ttttcaaaag 1440 ctttaaaatc aaggtttgtg gtccccatag ggaagatctc ctccctggaa ctgaaaaacg 1500 ttcccctctc gaataaatgg tttcttgagg cggatttgag taagtttgat aaatctcagg 1560 gtgagcttca tcttgagttc caaagagaga tattgttgtc actgggtttt ccagcccctt 1620 tgactaattg gtggtgtgat ttccataggg aatctatgct atcggatcct catgctggag 1680 ttaacatgcc ggtctcattt cagcgtcgta ctggtgacgc ttttacttat tttgggaaca 1740 cattagtgac aatggctatg atggcttatt gttgcgacat ggacgccgtg gattgtgcta 1800 tcttttccgg cgatgattcc ctgttaattt gtaagagcaa accacatctg gatgctaatg 1860 tttttcaatc tctgtttaat atggaaatta aggttatgga cccaagtttg ccatacgtct 1920 gtagtaagtt tcttttagaa actgaaatga ataatttggt gtctgtgcct gaccctatga 1980 gagagataca gagactggct aagcgaaaga tcattaaatc gcctgagttg ttaagagccc 2040 actttgagtc cttttgtgat aggatgaaat tcctaaacaa attggatgaa aaaatgataa 2100 atttattatg caagtttgtg gctctcaagt ataaaaaacc tgacgttgaa aacgatgtca 2160 gagtagccat tgctgctttc ggctactact cagaaaattt tttgagattt tgcgaatgtt 2220 acgcgactga aggggtcaat atatataagg taaaacatcc catcacccag gagtggttcg 2280 aggcctctag ggatcgagac ggtgactggt tccatgactg gcgtaacccg aagtttccca 2340 ctgccttaga taaggtttgg agattctttg gaaaatacgc aaaagatgat cctatgaaac 2400 acatagaaga gagagatagg ggacataggc tcaatcgagc catgaattct tccttgaaac 2460 ttgcctatga tcgtaggagt cttagtaagg ataaagaagc cgttgcgtgg gtgcgtaaga 2520 ccctttctaa ataatgttgg tcacattaaa gacttgttta gtccacatta ggactggttt 2580 taacagtttc cttaaactgt aatcgtcgtt gcgacgttga tttgcttaca agcaatcaag 2640 ctgcctttgg gttttactcc ttgaaccctt cagaagaatt cttcggagtt cgtaccagta 2700 cctcacatag tgaggtaata agactggtgg gcagtgccta gtcgaaagac taggtgatct 2760 ctaaggagac ca 2772 //