ID JN381824; SV 1; circular; genomic DNA; STD; VRL; 2628 BP. XX AC JN381824; XX DT 21-MAR-2012 (Rel. 112, Created) DT 05-JUN-2012 (Rel. 113, Last updated, Version 2) XX DE Tomato rugose yellow leaf curl virus isolate U4 clone 2 segment DNA_B, DE complete sequence. XX KW . XX OS Tomato rugose yellow leaf curl virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2628 RX PUBMED; 22383056. RA Marquez-Martin B., Maeso D., Martinez-Ayala A., Bernal R., RA Teresa Federici M., Vincelli P., Navas-Castillo J., Moriones E.; RT "Diverse population of a new bipartite begomovirus infecting tomato crops RT in Uruguay"; RL Arch. Virol. 157(6):1137-1142(2012). XX RN [2] RP 1-2628 RA Marquez-Martin B., Maeso D., Martinez-Ayala A., Bernal R., Federici M.T., RA Vincelli P., Navas-Castillo J., Moriones E.; RT ; RL Submitted (20-JUL-2011) to the INSDC. RL Virology, Inst. Hortofruticultura Subtropical y Mediterranea 'La Mayora' RL (IHSM-CSIC), Algarrobo Costa s/n., Algarrobo Costa, Malaga 29760, Spain XX DR MD5; 9ac8f20e837853571c8cb6aa81400e85. XX FH Key Location/Qualifiers FH FT source 1..2628 FT /organism="Tomato rugose yellow leaf curl virus" FT /segment="DNA_B" FT /host="tomato" FT /isolate="U4" FT /mol_type="genomic DNA" FT /country="Uruguay:Salto Grande" FT /collection_date="2009" FT /identified_by="B. Marquez-Martin" FT /clone="2" FT /db_xref="taxon:1162280" FT gene 488..1258 FT /gene="BV1" FT CDS 488..1258 FT /codon_start=1 FT /gene="BV1" FT /product="NSP" FT /db_xref="GOA:H8ZPQ0" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR001530" FT /db_xref="UniProtKB/TrEMBL:H8ZPQ0" FT /protein_id="AFD62695.1" FT /translation="MYTIRYRRGRSYTQGRGYSRYPLSKRSYAVKRTECKRRSSKVTHA FT DEDKKMSAQRLHENQFGAGFAMAHNTAMSTYITFPTLGRTEPNRSRSYIKLKRLRYKGT FT VKIERVHADVNMDVPAPKIEGVFSLVVVVDRKPHLNETGSLHSFDEIFGARINSHGNLA FT IAPVFKDRYYIRHVLKRVLSVEKDSLMVDLEGSMSLSNRRFNCWSTFKDLDRDSCNGVY FT ANISKNALLVYYCWMSDNASNASTFVSYDLDYVG" FT gene complement(1361..2242) FT /gene="BC1" FT CDS complement(1361..2242) FT /codon_start=1 FT /gene="BC1" FT /product="MP" FT /db_xref="GOA:H8ZPQ1" FT /db_xref="InterPro:IPR000211" FT /db_xref="UniProtKB/TrEMBL:H8ZPQ1" FT /protein_id="AFD62696.1" FT /translation="MESQLVHPPHAFNYIESQRDEYQLSHDQTEIKLQFPSTTSQLSAR FT LSRSCMKIDHSVIEYRQQVPINATGTVVVELHDTRLTNNESLQASWTFPIRCSIDLHYF FT SSSFFSLKDPIPWKLYYRVCDTNVHQGTHFAKIKGKLKLSTAKHSVDIPFRAPTVKILS FT KQFTEKDIDFSHVGYGKWERKLIRSASTTRFGLPGPIEIRPGESWATRSSIGHTHSDAE FT SDAGDAVHPYRHLNKLGTTVLDPGDSASIVGAHRAQSNITMSIAQLNDLVRSTVQECIN FT TNCTPSQPKSLK" XX SQ Sequence 2628 BP; 669 A; 471 C; 655 G; 833 T; 0 other; actggatggc cgcccgattt tggtgtccta atttgtggtg gccccacgcg atttggcgga 60 tgagtttacc aaaatgtccc tggtgtcccg tggagtttac caaagtgccc ctggtgtccc 120 gaaaatagtt gagcgcattt ttgacgtccg cgaaatgagt ggaatgtacg tttgggttcc 180 gtggactggg tcaacaagaa attcaaatta aagtggattt atgtttgtct agccaatcat 240 ttcgcgagtg ggaagtctct ttattttttg caacagtggt tgttataatg tgtctgataa 300 tagctggtag tcacttcgta ctgtaataat tgtgtgtgtg tggcactgtt ggccatatta 360 cgtggaccaa ttgaacatgt ggcacggtgt ttaattattg tatattatct agtatgaatt 420 gtgtataaat actcgatatt ggttgaggtg gatactatgt ttaattatat ttcctgtatt 480 ttgaaccatg tatactatta gatacagacg tggtaggtct tatactcaag gacgaggtta 540 ttcacgctat cctttgtcca agcgttcgta cgctgtgaaa cggacggagt gtaagcgtcg 600 atcgagtaag gtgacccatg ctgatgaaga caagaaaatg tcagcccagc ggctacatga 660 gaatcagttc ggtgctggat ttgctatggc tcataataca gcgatgtcca catacatcac 720 attcccaact cttggtagga ccgaacctaa ccgttcaagg tcatatatca agttgaaacg 780 cttacgttac aagggtactg tgaagattga gcgtgttcat gctgatgtga acatggacgt 840 tccagctcca aaaattgaag gagtgttttc tttggttgtg gtggttgatc gaaagccgca 900 tttgaatgaa actgggagtt tgcattcatt cgacgaaata ttcggtgcga ggattaatag 960 tcatggtaat ttagccatag ctcctgtgtt taaagatcgt tattacatac gtcatgtgct 1020 aaaacgagtg ctgtcagtgg agaaggatag cctgatggtc gatcttgagg gaagcatgtc 1080 cttatccaac cggcgtttca actgttggtc tacgtttaag gatttggata gggattcatg 1140 taatggggtt tatgccaata taagcaaaaa cgccctctta gtttattact gttggatgtc 1200 ggataatgcg tcgaatgcgt ctacatttgt atcatatgat cttgattatg tgggttgaat 1260 aaattgtatt gttgagtgtc caatttgtat atgctgtttt gtgagtaagt aaaatttgat 1320 aaataagtac ttgtgcatac tgatatgtta acaattaatt ttatttcaac gatttgggtt 1380 gtgatggagt acagttggtg ttgatacatt cttggactgt cgaccggaca aggtcgttta 1440 attgggctat tgacattgtg atgtttgact gtgccctatg agcacccact atagaagccg 1500 agtctcccgg gtctaagacg gtggttccta acttattgag atgtctatat gggtgtaccg 1560 cgtcccctgc gtccgactcc gcatctgaat gggtatgccc gatgctgctc cttgtagccc 1620 aagactcacc gggccttatt tctattgggc ctggaagccc aaatcttgtt gtggatgcgg 1680 atcggatcaa tttcctctcc catttcccat aacccacgtg ggagaaatcg atgtccttct 1740 ctgtgaattg tttggacaag atcttgaccg tcggtgcccg gaaaggaata tcaacggagt 1800 gtttagccgt ggacaacttg agtttcccct tgattttcgc gaaatgagtc ccttgatgta 1860 cgttggtgtc gcaaacccta taatatagtt tccatggaat tgggtctttg agtgagaaga 1920 atgaggatga gaaataatgg agatctatgc tgcaccggat cggaaatgtc catgacgctt 1980 gtaatgattc gttgtttgtg agccttgtgt catggagctc tactaccact gtccctgtgg 2040 cgttgattgg tacttgctgc ctgtattcta ttacgctatg gtcgatcttc atacagctgc 2100 gactgagtct ggcacttagt tgagacgtcg tggacggaaa ctgcaactta atctccgttt 2160 ggtcatgcga taactggtat tcatcacgct gcgattctat ataattaaag gcatgtggtg 2220 gatgcactaa ctgagattcc attggtaaat ctggccgcgc agcggaaacg tctgtgaaat 2280 ttgtttgacg aagagacgat tgacgaagag aaatttctag gaaaatgaat tgaagatgag 2340 aaattgatat gaaacaaaac tgaagatgga aaaagttaaa tgaattgtgg gttatgtggt 2400 ggtaagggat ctgatgaagt atattgtgtg gtattgttaa taatatgtgt ggcagtcctc 2460 ttaaatagcc tttaaatgtt gttatggagg acaccagcat caaataatgg aggacaccgg 2520 tatggctctc aacttctctc ctatttgttg gtgtcctggt gtccctttta aaccctcttg 2580 aatcctcttg aattctcaag gggcataagc ggccatccat ataatatt 2628 //