ID JN663853; SV 1; circular; genomic DNA; STD; VRL; 2760 BP. XX AC JN663853; XX DT 02-JAN-2013 (Rel. 115, Created) DT 02-JAN-2013 (Rel. 115, Last updated, Version 1) XX DE Pepper leaf curl Bangladesh virus-India isolate Chhapra segment DNA-A, DE complete sequence. XX KW . XX OS Pepper leaf curl Bangladesh virus-India OC Viruses; Geminiviridae; Begomovirus; unclassified Begomovirus. XX RN [1] RP 1-2760 RA Vinothkumar R., Singh A.K., Chakraborty S.; RT "Molecular diversity of begomoviruses causing leaf curl disease of chillies RT in India"; RL Unpublished. XX RN [2] RP 1-2760 RA Vinothkumar R., Singh A.K., Chakraborty S.; RT ; RL Submitted (09-SEP-2011) to the INSDC. RL Molecular Virology Laboratory, School of Life Sciences, Jawaharlal Nehru RL University, New Mehrauli Road, New Delhi, Delhi 110067, India XX DR MD5; d84b364c5899dbcceb6a3ef9cdf63715. DR EuropePMC; PMC6344024; 30673741. XX FH Key Location/Qualifiers FH FT source 1..2760 FT /organism="Pepper leaf curl Bangladesh virus-India" FT /segment="DNA-A" FT /host="chilli" FT /isolate="Chhapra" FT /mol_type="genomic DNA" FT /country="India" FT /collected_by="A K Singh" FT /collection_date="13-Jan-2010" FT /clone="Xba I-1" FT /db_xref="taxon:1000670" FT gene 147..503 FT /gene="AV2" FT CDS 147..503 FT /codon_start=1 FT /gene="AV2" FT /product="pre-coat protein" FT /db_xref="GOA:L0EL48" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:L0EL48" FT /protein_id="AGA60267.1" FT /translation="MWDPLVNDFPESVHGFRCMLAVKYLQLVEKTYSPDTLGYDLIRDL FT ISVIRARNYVEATSRYNHFHARLEGTPPSQLRQPIYQPCCCPHCPRHQSKSMGQQAHEQ FT EAQDVQDVQKPRCS" FT gene 307..1077 FT /gene="AV1" FT CDS 307..1077 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:L0EKE7" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:L0EKE7" FT /protein_id="AGA60266.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYTSRAAAPIVRVTKAKAWA FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDIQHIGKVMCVSDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNVHRDRYQVLRKWHATVTGGQYASKEQALVKKFIRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT gene complement(1080..1484) FT /gene="AC3" FT CDS complement(1080..1484) FT /codon_start=1 FT /gene="AC3" FT /product="REn" FT /db_xref="GOA:L0ELU3" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:L0ELU3" FT /protein_id="AGA60270.1" FT /translation="MDSRTGEPITAAQAENSVLIWEITNPLYFKIIEHHHRPFLRNHDI FT ITVQVRFNHNLRKALGIHKCFLTFRIWTTLQPQTGHFLRVFRTQVLQFLNNFAVISINN FT VLRAVDHVLWNVLAQTIHVQSSNIIKFNIY" FT gene complement(1225..1629) FT /gene="AC2" FT CDS complement(1225..1629) FT /codon_start=1 FT /gene="AC2" FT /product="TrAP" FT /db_xref="GOA:L0EKN9" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:L0EKN9" FT /protein_id="AGA60269.1" FT /translation="MRPSSPSRAHSTQVPIKVQHRLAKKGTRRRRVDLDCGCSYFIALR FT CHGYGFTHRGTHHCSSSREFRAYLGDNKSPVFQDNRAPPPAIPEEPRHHNSPSTVQSQP FT EESFGDTQMFSNLPNLDDLTASDWSFLKGI" FT gene complement(1532..2617) FT /gene="AC1" FT CDS complement(1532..2617) FT /codon_start=1 FT /gene="AC1" FT /product="REP" FT /db_xref="GOA:L0EJ46" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:L0EJ46" FT /protein_id="AGA60268.1" FT /translation="MTRPHQFQVKAKNIFLTYPKCPIPKEQMLELLKNISCPSDKLFIR FT VSQEKHQDGSLHIHALIQFKGKSQFRNPRHFDVTHPNNATQFHPNFQGAKSSSDVKSYI FT EKDGDYIDWGKFQIDGRSARGGQQTANDAAAEALNAGSAEAALAIIREKLPKDFIFQYH FT NLKCNLDRIFTPPVEVYVSPFSSSSFDQVPEELEEWAAENVLGAAARPLRPISIVLEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVQIKGGIPAIFLCNPGPNSSYKEFLDEEKNSALKNWALKNATFITLEGPL FT YSGSNQSAAQASQEGDQASSR" FT gene complement(2203..2460) FT /gene="AC4" FT CDS complement(2203..2460) FT /codon_start=1 FT /gene="AC4" FT /product="AC4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:L0EKF3" FT /protein_id="AGA60271.1" FT /translation="MGACISMPSSSSKVNPSSETPDISMSLTLITPPNSTQTSRELSPV FT PMSSPTSRRTVITSTGVSFRSMDDLLEEVNRQLMMLQQRP" XX SQ Sequence 2760 BP; 734 A; 581 C; 650 G; 795 T; 0 other; accggatggc cgcgattttt ttccaggtgg gccccacaac acacgtgctg acaaggacta 60 gtgaaccaat tagaaacgcc cctcaaagct taattattca ttggtccctt atataaactt 120 ggtccccaag tattgcacac ataccaatgt gggatccgtt agtaaacgac tttcctgaaa 180 gcgttcacgg ttttaggtgt atgctagccg ttaaatatct tcagctagta gaaaagacgt 240 attctccaga cactctcggt tacgatttaa tccgggattt gatctcggtt attagggcta 300 gaaattatgt cgaagcgacc agcagatata atcatttcca cgcccgcctc gaaggtacgc 360 cgccgtctca acttcgacag cccatatacc agccgtgctg ctgcccccat tgtccgcgtc 420 accaaagcaa aagcatgggc caacaggccc atgaacagga agcccaggat gtacaggatg 480 tacagaagcc cagatgttcc tagaggatgt gaaggcccgt gtaaggtcca gtcctttgag 540 tccagacatg atatccagca cattggtaaa gtcatgtgtg ttagtgatgt tactcgtggt 600 actggtctga cccacagagt tggtaaaagg ttttgtgtaa aatcagtcta tgttctgggc 660 aagatttgga tggatgagaa tataaagact aagaatcaca cgaatagtgt tatgtttttc 720 cttgttaggg atcgtaggcc cgttgataag ccccaagatt ttggtgaggt ttttaacatg 780 tttgacaatg agcccagtac ggcaacggtc aagaacgtgc atcgtgacag gtatcaggtg 840 ctgaggaagt ggcatgcaac cgttacaggt ggtcaatacg catcgaagga gcaagctctc 900 gtgaagaagt ttattagggt taataattat gttgtgtata accagcaaga ggctggcaag 960 tatgaaaacc atactgagaa tgcattgatg ttgtacatgg catgtactca tgcctcgaac 1020 cctgtgtatg ctacgttgaa gatacggatc tatttttacg actctgtaac caactgaaat 1080 taataaatat tgaattttat tatgtttgaa ctctgtacat gaattgtttg tgctaataca 1140 ttccataata catgatcgac agctctaagt acattgttta tactaattac agcaaaatta 1200 tttaaaaact gcaacacttg ggtcctaaat acccttaaga aatgaccagt ctgaggctgt 1260 aaggtcgtcc agattcggaa ggttagaaaa catttgtgta tccccaaagc tttcctcagg 1320 ttgtgattga accgtacttg gactgttatg atgtcgtggt tcctcaggaa tggccggtgg 1380 tggtgctcga ttatcttgaa atacagggga tttgttatct cccagataag cacggaattc 1440 tctgcttgag ctgcagtgat gggttcccct gtgcgtgaat ccatagccgt ggcagcgtaa 1500 tgcgatgaaa tatgaacagc cgcagtctag gtcaacgcga cgacgcctgg tccccttctt 1560 ggctagcctg tgctgcactt tgattggaac ctgagtagag tgggccctcg agggtgatga 1620 aggtcgcatt ctttaaagcc caatttttga gtgcggaatt cttctcttca tccaagaact 1680 ctttatagct ggaattgggt cctggattgc agaggaagat agcgggaatt ccacctttaa 1740 tttgaactgg ctttccgtat tttgtatttg attgccagtc cctttgggcc cccatgaatt 1800 ccttaaagtg ctttaggtaa tgcgggtcga cgtcatcaat gacgttgtac caggcgtcat 1860 tactgtagac ctttgggcta aggtctagat gtccacacaa atagttgtgt ggacccaatg 1920 acctggccca catcgtcttc cccgtcctac tatcgccctc taacacaata cttatgggtc 1980 ttaaaggccg cgcagcggca ccgagaacat tctcggcagc ccattcttca agttcttctg 2040 gaacttgatc aaaagaagag gaagaaaaag gagaaacata aacctccaca ggaggtgtaa 2100 aaatcctatc taaattacat tttaaattat gatattggaa aataaaatct ttaggtagtt 2160 tttccctaat tattgctaac gccgcttcag ccgaacctgc attcagggcc tctgctgcag 2220 catcattagc tgtctgttga cctcctctag cagatcgtcc atcgatctga aacttacccc 2280 agtcgatgta atcaccgtcc ttctcgatgt aggacttgac atcggaactg gacttagctc 2340 cctggaagtt tgggtggaat tgggtggcgt tattagggtg agtgacatcg aaatgtctgg 2400 ggtttcggaa ctgggattta cctttgaact ggatgagggc atggatatgc aggctcccat 2460 cttggtgttt ttcctgtgag actctgataa ataatttatc agaaggacaa gaaatgtttt 2520 taagtagttc gagcatttgc tctttgggta ttgggcattt aggataagta aggaagatat 2580 ttttggcctt aacttggaat tggtgcggac gtgtcatatt gaattgggtg ctcttcaaaa 2640 ctctacggaa tggggtgctt tgggtgccta tttataccga gctcccaaat ggcatttccg 2700 taatttcggg gaaaattcca aatttttccc gctccaaaaa gcggccatcc gtataatatt 2760 //