ID JQ266228; SV 1; linear; genomic RNA; STD; VRL; 2876 BP. XX AC JQ266228; XX DT 28-MAR-2012 (Rel. 112, Created) DT 09-NOV-2012 (Rel. 114, Last updated, Version 3) XX DE Sugarcane yellow leaf virus isolate CHN-GD3 multifunctional protein, DE RNA-dependent RNA polymerase, and putative aphid transmission factor genes, DE partial cds; and coat protein and movement protein genes, complete cds. XX KW . XX OS Sugarcane yellow leaf virus OC Viruses; Riboviria; Luteoviridae; Polerovirus. XX RN [1] RP 1-2876 RX DOI; 10.1007/s11262-012-0774-1. RX PUBMED; 22752564. RA Gao S.J., Lin Y.H., Pan Y.B., Damaj M.B., Wang Q.N., Mirkov T.E., RA Chen R.K.; RT "Molecular characterization and phylogenetic analysis of Sugarcane yellow RT leaf virus isolates from China"; RL Virus Genes 45(2):340-349(2012). XX RN [2] RP 1-2876 RA Gao S.-J., Wang Q.-N., Lin Y.-H., Huang X.-D., Chen R.-K.; RT ; RL Submitted (09-DEC-2011) to the INSDC. RL Sugarcane Research Institute, Fujian Agriculture and Forestry, 15 Shangxia RL Dian Rd, Cangshan District, Fuzhou, Fujian 350002, China XX DR MD5; 8a13633974b2e0aab13d6179c3b0ac6b. XX FH Key Location/Qualifiers FH FT source 1..2876 FT /organism="Sugarcane yellow leaf virus" FT /host="sugarcane cv. YT86-368" FT /isolate="CHN-GD3" FT /mol_type="genomic RNA" FT /country="China" FT /collection_date="Nov-2010" FT /db_xref="taxon:94290" FT CDS <1..628 FT /codon_start=2 FT /product="multifunctional protein" FT /note="ORF1" FT /db_xref="GOA:H9NAD7" FT /db_xref="InterPro:IPR000382" FT /db_xref="UniProtKB/TrEMBL:H9NAD7" FT /protein_id="AFF19528.1" FT /translation="DYAEEVYEKTLAEPKVWKPASGKYWWEMAEEEDDFVVEAKLPPPD FT KPVENATAIADQPTPDQGNEPSGADHLKTPESTPLKQDESTKELLNNIVLQLIQKIDLS FT SIATRVEEKLLRQAQNKQQQTGGKKSPRKRKTSNTSSKPHTNGKSPPVTSQGSGNAANS FT PRYTIPQNRRAHNGESASSQSTQKWRPKSPVSGGPPSAPEPKRQV" FT CDS <169..1887 FT /codon_start=1 FT /product="RNA-dependent RNA polymerase" FT /note="ORF2; produced by predicted -1 translational FT frameshift" FT /db_xref="GOA:H9NAD8" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:H9NAD8" FT /protein_id="AFF19529.1" FT /translation="SADSRPGKRAKWRRPLKNTGIHPAQARRIYKRVAQQHRLAVDSKD FT RPELHCNEGGGETAASGPEQTAADRREEVAQKTQDLEHFFQAAYKWEESTSDIPGFRKC FT GKLPALYHPPKPKSTQWGERIISEHPEMASKVAGFGWPSFGARAEETSLRLQAARWLKR FT AESAEKPTEKQRKLVIDRVVKAYEPCRTNAPHTSSSGSLIWSDFLKDFKEAVNSLELDA FT GIGLPYKLLHKDTHRQMVEDPKFLPLLTRLTWNRLQKMSQVDFQEMTPEQLVREGLCDP FT IRLFVKGEPHKQAKLDEGRYRLIMSVSLVDQLVARVLFQAQNKREIALWRAIPSKPGFG FT LSTDREAREFIESLSKTVGCSPAEVIHGWRNKIVPTDCSGFDWSVADWMLEDDMEVRNL FT LTINNNELTRRLRACWLKCITNSVICTSGGVLYAQTHPGVQKSGSYNTSSSNSRIRVMA FT AFHCGADWAIAMGDDALESPNSNINAYQKLGFKVEVASQLEFCSHVFEQEDLARPLNVN FT KMLYRLIFGYNPACGNAEVLCNYLQAVASVLNELRHDPQLVATLHEWLVPGAATK" FT CDS 2082..>2876 FT /codon_start=1 FT /transl_except=(pos:2670..2672,aa:OTHER) FT /product="putative aphid transmission factor" FT /note="ORF5; produced by translational readthrough of TAG FT stop codon" FT /db_xref="GOA:H9NAD9" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:H9NAD9" FT /protein_id="AFF19530.1" FT /translation="MNTGANRSRRNVRRRANRRRQTRPVVVVRAPPGPRRVRRRRARVG FT GNAVRGPGGRSNRDVLTFTVDDLKANSTGILKFGPNLSQYAAFNNGLLKAYHEYKITSL FT TIQYNSCSSDATPGAIALEVDTSCSQTTTGSKITSFPVKRNAKKVFPAPFIRGKDFMTT FT SADQFWLLYKGNGDSSLAGQFVCRFECLFQNPKXVGDAPPTPTLTPTPPAPTPAPASKY FT LGYQGVPKNIVKTRGNSEYLDVGPLENVTMYLWKDESWSIEQL" FT CDS 2082..2672 FT /codon_start=1 FT /product="coat protein" FT /note="ORF3" FT /db_xref="GOA:Q9QQN7" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q9QQN7" FT /protein_id="AFF19531.1" FT /translation="MNTGANRSRRNVRRRANRRRQTRPVVVVRAPPGPRRVRRRRARVG FT GNAVRGPGGRSNRDVLTFTVDDLKANSTGILKFGPNLSQYAAFNNGLLKAYHEYKITSL FT TIQYNSCSSDATPGAIALEVDTSCSQTTTGSKITSFPVKRNAKKVFPAPFIRGKDFMTT FT SADQFWLLYKGNGDSSLAGQFVCRFECLFQNPK" FT CDS 2113..2565 FT /codon_start=1 FT /product="movement protein" FT /note="ORF4" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:Q9WI47" FT /protein_id="AFF19532.1" FT /translation="MSEDALTVVDRLGQWSWSGLPQDLDEYDDVEHVLEETLCEDREEE FT ATGMFSLSRLTISKPTQPGSSNSDRTYLSTQRSTMAYSKPTMSIKSQVSLFSITHAPPT FT QLQVQSHLKWIHPAPKQQQAPRLLASPSRGTPRKSSRPPSSGGKIS" XX SQ Sequence 2876 BP; 805 A; 773 C; 708 G; 590 T; 0 other; tgattacgcc gaggaggtgt atgagaaaac ccttgcagag cctaaagtgt ggaaacctgc 60 cagcggtaaa tactggtggg aaatggctga agaagaggat gattttgtcg ttgaggcaaa 120 gttacctccc cctgataaac ctgttgagaa cgctacagca attgctgatc agccgactcc 180 agaccaggga aacgagccaa gtggcgccga ccacttaaaa acaccggaat ccaccccgct 240 caagcaagac gaatctacaa aagagttgct caacaacatc gtcttgcagt tgattcaaaa 300 gatcgacctg agctccattg caacgagggt ggaggagaaa ctgctgcgtc aggcccagaa 360 caaacagcag cagaccggag ggaagaagtc gcccagaaaa cgcaagacct cgaacacttc 420 ttccaagccg catacaaatg ggaagagtcc accagtgaca tcccagggtt caggaaatgc 480 ggcaaactcc ccgcgctata ccatccccca aaaccgaaga gcacacaatg gggagagcgc 540 atcatctcag agcacccaga aatggcgtcc aaagtcgccg gtttcgggtg gccctccttc 600 ggcgcccgag ccgaagagac aagtctgaga ctccaagcgg cacgctggct taaacgagct 660 gagtcagcgg aaaagccgac agaaaaacaa cgcaagctcg tcattgatcg tgtggtcaag 720 gcatatgaac cgtgtagaac taatgcccca cacaccagct cctctggcag cctcatctgg 780 tccgacttct tgaaagattt caaggaggct gtcaactcac tagaactcga tgcaggaata 840 ggtctcccat acaagcttct tcacaaggac actcatcgtc agatggttga agaccccaaa 900 ttcctgccgc tcctgacgcg attgacctgg aaccgtttac agaagatgtc ccaggttgac 960 ttccaggaga tgactcctga acaactagtg agagaaggat tgtgcgatcc gattcgtttg 1020 ttcgtcaaag gggaaccgca caagcaggca aaacttgatg aagggcgcta ccgcctcatc 1080 atgtcagtct cgctggtaga tcaactggta gcccgggttt tgtttcaggc acaaaacaaa 1140 agagagatag ctttgtggag agctatccct tcaaagcccg gtttcggctt atccacagac 1200 agggaagcac gcgaattcat tgaatccctg tccaagacag tagggtgttc cccagcagaa 1260 gtcattcatg gctggaggaa caagatcgta cccaccgact gttccggttt tgactggtca 1320 gtcgccgact ggatgctcga agacgacatg gaagtgagaa atcttctcac aatcaacaac 1380 aacgagctaa cccgccgcct cagggcgtgc tggttgaagt gcatcacaaa ctctgtgatt 1440 tgcacatccg gcggtgtctt gtacgcccaa actcatcctg gagtgcaaaa atctggatct 1500 tacaacacga gttcatccaa ttccaggatt cgagtaatgg ccgcttttca ttgcggcgca 1560 gattgggcga tagccatggg agacgatgca cttgagtctc caaactccaa catcaacgcg 1620 tatcaaaagt tggggttcaa agtcgaggtt gcctcacagc tagaattttg ctcacacgtc 1680 tttgagcagg aggacctcgc caggccgttg aacgtaaaca aaatgcttta tcgtttgatc 1740 tttggataca atccggcctg tggcaacgcg gaggtattgt gcaattacct ccaagctgtg 1800 gcttctgttc tcaacgagct tcgccatgat ccacagctag ttgctaccct ccatgagtgg 1860 ctggtccctg gcgccgccac aaaataaata cggaggggca tcccgagcca ccacataggt 1920 tgcaagagtg gaacgggaag tcctatagac aagccgcgcg attctggatt acaaacttct 1980 agcggggatc ctcattggtg ttctcatcgc aatcccccta gtgatcatag cggcttacct 2040 gatattcctc aaaatcagtg cacacatccg agcgatagtg aatgaatacg ggcgctaacc 2100 gctcacgaag gaatgtcaga agacgcgcta accgtcgtag acagactcgg ccagtggtcg 2160 tggtccgggc tcccccagga cctagacgag tacgacgacg tagagcacgt gttggaggaa 2220 acgctgtgcg aggaccggga ggaagaagca accgggatgt tctcactttc acggttgacg 2280 atctcaaagc caactcaacc gggatcctca aattcggacc gaacttatct cagtacgcag 2340 cgttcaacaa tggcttactc aaagcctacc atgagtataa aatcacaagt ctcactattc 2400 agtataactc atgctcctcc gacgcaactc caggtgcaat cgcacttgaa gtggatacat 2460 cctgctccca aacaacaaca ggctccaaga ttactagctt ccccgtcaag aggaacgcca 2520 agaaagtctt cccggccccc ttcatcaggg ggaaagattt catgactacg tcagctgacc 2580 agttttggtt gctgtacaaa gggaatggag actcgagcct agcaggacaa ttcgtctgcc 2640 gatttgaatg ccttttccag aatcccaaat aggtaggcga cgctccccca acacccaccc 2700 taacaccaac cccacccgct ccgaccccgg caccggcttc taagtatctt ggataccaag 2760 gagtgccgaa aaacatcgtg aaaacaagag gaaactctga atatctagat gtgggtccgc 2820 tcgaaaatgt aaccatgtat ctttggaaag acgaatcgtg gagcattgag caactg 2876 //