ID   JQ361108; SV 1; linear; genomic RNA; STD; VRL; 1374 BP.
XX
AC   JQ361108;
XX
DT   25-APR-2012 (Rel. 112, Created)
DT   25-APR-2012 (Rel. 112, Last updated, Version 1)
XX
DE   Lily mottle virus isolate LMoV-NJ HC protein gene, partial cds.
XX
KW   .
XX
OS   Lily mottle virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1374
RA   Wang L., Kong B., Chen H.;
RT   "Detection of Lily mottle virus in Lily by RT-PCR";
RL   Unpublished.
XX
RN   [2]
RP   1-1374
RA   Wang L., Kong B., Chen H.;
RT   ;
RL   Submitted (05-JAN-2012) to the INSDC.
RL   Department of Phytopathology, Yunnan Agricultural University, National
RL   Center for Agricultural Biodiversity, Kunming, Yunnan Province 650201,
RL   China
XX
DR   MD5; 4f2d0108e168ee0a8377121321c55780.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1374
FT                   /organism="Lily mottle virus"
FT                   /host="Lilium davidii (lily)"
FT                   /isolate="LMoV-NJ"
FT                   /mol_type="genomic RNA"
FT                   /country="China:Nanjian, Yunnan"
FT                   /collection_date="2008"
FT                   /db_xref="taxon:32624"
FT   CDS             <1..>1374
FT                   /codon_start=1
FT                   /product="HC protein"
FT                   /note="HC-Pro"
FT                   /db_xref="GOA:I1V5D5"
FT                   /db_xref="InterPro:IPR001456"
FT                   /db_xref="InterPro:IPR031159"
FT                   /db_xref="InterPro:IPR042308"
FT                   /db_xref="UniProtKB/TrEMBL:I1V5D5"
FT                   /protein_id="AFI26396.1"
FT                   /translation="SRPGDKFWAGFNSQFLRIKPKEIPHTCTSNFNVFECGQVAALMCQ
FT                   ALYPCGRITCQQCASEYLELTKVELGEKLSDGLYRTSSQIRENHQEFAHVAHILTVIAD
FT                   LLSLKNNNMEAFTEVHKLIGEQTQSPFTHLNRLNSILIKGSDMSSNELYECSDCIRELA
FT                   RFQKNRTDNIKKLDVSVFRNKASSKSYFNLDLMCDNQLDKNGNFEWGQRGYHAKRFLSN
FT                   YFEVVNTQNAYREHTLRKHPNGTRELAIGKFIVSTNFEVFRKSMEGRRIPQMPVTEACL
FT                   SQRGERFIYQCCCVTNEDGTPLESTFKMPTKNTLVLGNTGDEKFVDMPTDTDEKMYIAR
FT                   EGYCYINIFFAMLINVRESQAKAFTKMVRDRLVPELGTWPTMIDVATACHTLTVFFPDT
FT                   LSAELPRILVDHNTKTMHVIDSYGSVSTGYHQLKANTVSQLVLFASDTLKSEMKHYQVG
FT                   "
XX
SQ   Sequence 1374 BP; 416 A; 327 C; 325 G; 306 T; 0 other;
     tcgcgcccag gcgataaatt ctgggcaggg ttcaactctc aattcctcag gatcaaaccc        60
     aaggaaatac cacacacttg cacatcaaat ttcaacgtct tcgagtgtgg acaggtcgcg       120
     gctcttatgt gccaagcact gtacccatgt gggagaatca catgtcaaca atgtgcgtcc       180
     gaatatctgg agctgacgaa ggtcgaactc ggggaaaagc tcagcgatgg tttgtataga       240
     acaagttcgc aaattcgtga aaaccaccaa gagttcgccc atgtggcaca catactcact       300
     gtgatagctg atcttctgag cctcaagaac aacaacatgg aggcgttcac agaagtccac       360
     aaactcatag gtgagcaaac acagtcacca ttcacacacc tcaatcgctt gaattcaata       420
     ctgatcaaag gcagcgatat gagcagcaat gagctgtatg aatgttcaga ctgtattcgt       480
     gagcttgcgc gattccagaa gaacagaaca gataacatca agaaactgga cgttagtgtg       540
     tttcggaata aagcatcctc caagtcatac ttcaacctgg acttgatgtg tgacaaccaa       600
     cttgacaaga atggaaattt cgaatggggc cagcgaggct accatgccaa acggttctta       660
     tcgaattatt ttgaggttgt caacacacag aatgcctacc gagagcacac actgaggaag       720
     catccgaatg gcacgcgaga gctcgcaatt gggaaattta tagtgtcaac aaactttgaa       780
     gtgtttcgca agagcatgga agggaggcgc ataccacaaa tgcctgtaac tgaggcttgc       840
     ctgagtcagc gtggagagcg tttcatttac cagtgctgct gtgtaacaaa cgaggatggc       900
     actccactcg agtcgacatt caaaatgccc acgaagaata cactcgtgct tgggaacacg       960
     ggtgatgaga aatttgtcga catgcccacc gacacggatg agaagatgta tatagctcga      1020
     gagggctact gctacatcaa catatttttc gccatgctaa taaacgttcg tgaaagtcaa      1080
     gcaaaggcat ttacgaagat ggtgcgagac cgcctcgtac ccgagcttgg aacatggcca      1140
     actatgatcg atgtggcaac agcatgccac acattgactg tcttcttccc agatacactg      1200
     agcgcagaac tcccgcgaat tctagtggac cacaacacta agacgatgca tgtgattgac      1260
     tcatacggat ctgttagcac tggctaccat cagttaaagg ctaacacagt gagtcagcta      1320
     gtcctctttg ctagtgacac gctgaagtca gaaatgaagc actaccaggt cggc            1374
//