ID   JQ654461; SV 1; circular; genomic DNA; STD; VRL; 2768 BP.
XX
AC   JQ654461;
XX
DT   17-MAY-2012 (Rel. 112, Created)
DT   17-MAY-2012 (Rel. 112, Last updated, Version 1)
XX
DE   Tomato leaf curl Joydebpur virus clone HJP05 segment DNA-A, complete
DE   sequence.
XX
KW   .
XX
OS   Tomato leaf curl Joydebpur virus
OC   Viruses; Geminiviridae; Begomovirus.
XX
RN   [1]
RP   1-2768
RA   Kumar J., Tuli R.;
RT   "Evolution of a Tomato leaf curl Joydebpur virus variant in India";
RL   Unpublished.
XX
RN   [2]
RP   1-2768
RA   Kumar J., Tuli R.;
RT   ;
RL   Submitted (09-FEB-2012) to the INSDC.
RL   Agri-Biotechnology, National Agri-Food Biotechnology Institute, India,
RL   C-127, Phase-8, Mohali, Punjab 160071, India
XX
DR   MD5; 952415f83afc36224b3445308835512b.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2768
FT                   /organism="Tomato leaf curl Joydebpur virus"
FT                   /segment="DNA-A"
FT                   /host="Phaseolus aureus"
FT                   /mol_type="genomic DNA"
FT                   /country="India"
FT                   /collection_date="Mar-2011"
FT                   /clone="HJP05"
FT                   /db_xref="taxon:309390"
FT   gene            146..508
FT                   /gene="AV2"
FT   CDS             146..508
FT                   /codon_start=1
FT                   /gene="AV2"
FT                   /product="movement protein"
FT                   /db_xref="GOA:I2BJC0"
FT                   /db_xref="InterPro:IPR002511"
FT                   /db_xref="InterPro:IPR005159"
FT                   /db_xref="UniProtKB/TrEMBL:I2BJC0"
FT                   /protein_id="AFJ54066.1"
FT                   /translation="MWDPDPLVNDFPETVHGFRCMLAVKYLQLVEKTYSPDTLGYDLIR
FT                   DLISVIRARNYVEATSRYNHFHARLEGTPPSQLRQPICQPCCCPHCPRHQSKSMGEQAH
FT                   EQEAQDVQDVQKPRCS"
FT   gene            complement(290..580)
FT                   /gene="AC5"
FT   CDS             complement(290..580)
FT                   /codon_start=1
FT                   /gene="AC5"
FT                   /product="AC5"
FT                   /db_xref="GOA:I2BJD0"
FT                   /db_xref="UniProtKB/TrEMBL:I2BJD0"
FT                   /protein_id="AFJ54068.1"
FT                   /translation="MTLPMCWTSCRDSKDWTLHGPSHPLGTSGLLYILYILGFLFMGLF
FT                   AHAFALVTRTMGAAARLAYGLSKLRRRRTFEAGVEMIISAGRFDIISSPDD"
FT   gene            complement(303..977)
FT                   /gene="AC6"
FT   CDS             complement(303..977)
FT                   /codon_start=1
FT                   /gene="AC6"
FT                   /product="AC6"
FT                   /db_xref="InterPro:IPR006892"
FT                   /db_xref="InterPro:IPR013671"
FT                   /db_xref="UniProtKB/TrEMBL:I2BJC3"
FT                   /protein_id="AFJ54069.1"
FT                   /translation="MVFILASLLLVIHNIIVNSNKLLHERLLLRCILTTSHSCMPLPQH
FT                   LIPVTMHVLHSRRTWLIIKHVEYLTKVLGLINGPTISNKEKHNTIRVILSLDVLIHPNL
FT                   AQNIDGLNTKPFTNSMGQPSSTSNITNTHDFTYVLDIMSGLKRLDLTWAFTSPRNIWAS
FT                   VHPVHPGLPVHGPVRPCFCFGDADNGGSSTAGIWAVEVETAAYLRGGRGNDYICWSLRH
FT                   NF"
FT   gene            312..1082
FT                   /gene="AV1"
FT   CDS             312..1082
FT                   /codon_start=1
FT                   /gene="AV1"
FT                   /product="coat protein"
FT                   /db_xref="GOA:I2BJC1"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="InterPro:IPR000650"
FT                   /db_xref="UniProtKB/TrEMBL:I2BJC1"
FT                   /protein_id="AFJ54067.1"
FT                   /translation="MSKRPADIIISTPASKVRRRLNFDSPYASRAAAPIVRVTKAKAWA
FT                   NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVQHIGKVMCVSDVTRGTGLTHR
FT                   VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP
FT                   STATVKNVHRDRYQVLRKWHATVTGGQYASKEQALVKKFIRVNNYVVYNQQEAGKYENH
FT                   SENALMLYMACTHASNPVYATLKIRIYFYDSVTN"
FT   gene            complement(1079..1483)
FT                   /gene="AC3"
FT   CDS             complement(1079..1483)
FT                   /codon_start=1
FT                   /gene="AC3"
FT                   /product="REn"
FT                   /note="replication enhancer"
FT                   /db_xref="GOA:I2BJB6"
FT                   /db_xref="InterPro:IPR000657"
FT                   /db_xref="UniProtKB/TrEMBL:I2BJB6"
FT                   /protein_id="AFJ54070.1"
FT                   /translation="MDLRTGEPITAAQAENGVFIWEITNPLYFKITEHHHRPFLMNHDI
FT                   ITVQVQFNHNLRKALGIHKCFLTFRIWTTLQPQTGHFLRVFRTQVLRFLNNFAVISINN
FT                   VIRAVDHVLWNVFAQTIYVQSSNIIKFNIY"
FT   gene            complement(1224..1628)
FT                   /gene="AC2"
FT   CDS             complement(1224..1628)
FT                   /codon_start=1
FT                   /gene="AC2"
FT                   /product="TrAP"
FT                   /note="transactivator protein"
FT                   /db_xref="GOA:I2BJC5"
FT                   /db_xref="InterPro:IPR000942"
FT                   /db_xref="UniProtKB/TrEMBL:I2BJC5"
FT                   /protein_id="AFJ54071.1"
FT                   /translation="MRPSSPSKAHSTLVPIKVQHRLAKKGTRRRRVDLDCGCSYFIALR
FT                   CHDYGFTHRGTHHCSSGREWRVYLGDNKSPVFQDNRAPPPAIPNEPRHHNSPSTIQSQP
FT                   EESVGDTQMFSNLPNLDDLTASDWSFLKGI"
FT   gene            complement(1531..2616)
FT                   /gene="AC1"
FT   CDS             complement(1531..2616)
FT                   /codon_start=1
FT                   /gene="AC1"
FT                   /product="Rep"
FT                   /note="replication initiation protein"
FT                   /db_xref="GOA:I2BJD4"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:I2BJD4"
FT                   /protein_id="AFJ54072.1"
FT                   /translation="MPPPKRFQIYAKNYFLTYPQCSLTKEDALSQLQNLSTPTNKLFIR
FT                   VSRELHENGEPHLHVLIQFEGKFKCQNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKAYV
FT                   EKDGDFIDFGVFQIDGRSARGGQQSANDAYAEAINSGSKAAALNILREKAPKDYVLQFH
FT                   NLNANLDRIFTPPLEVYVSPFSSSSFDQVPDELDEWAAENVVSAAARPLRPVSVVIEGD
FT                   SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW
FT                   QSNTKYGKPVQIKGGIPAIFLCNPGPNSSYKEFLDEEKNSALKNWALKNATFITLEGPL
FT                   YSCSNQSAAQASQEGDQASSR"
FT   gene            complement(2166..2465)
FT                   /gene="AC4"
FT   CDS             complement(2166..2465)
FT                   /codon_start=1
FT                   /gene="AC4"
FT                   /product="AC4"
FT                   /note="suppressor of PTGS"
FT                   /db_xref="InterPro:IPR002488"
FT                   /db_xref="UniProtKB/TrEMBL:I2BJB9"
FT                   /protein_id="AFJ54073.1"
FT                   /translation="MKMGNLICTSSYSSKVNSNAKTTDSSTSFPLPGQHISIRTFRELK
FT                   ARQMSRPMWRKTETSLILEFSRSMEDQLEEVSSLPTTHMPRQSIQGPKLRPSIY"
XX
SQ   Sequence 2768 BP; 758 A; 578 C; 649 G; 783 T; 0 other;
     accggatggc cgcgattttt tcctagtggg ccccacaacg cacgtgctta caaggacaat        60
     tggaccaatt agaaacgccg ctcaaagctt aattatttcg tggtccccta tataaacttg       120
     ggctccaagt agtgcactca taccaatgtg ggatccggat ccgttagtaa acgactttcc       180
     tgaaaccgtt cacggtttta ggtgtatgct agccgttaaa tatcttcagc tagtagaaaa       240
     gacctattct ccagatactc tcgggtacga tttaatccgg gatttaattt cagtcatcag       300
     ggctagaaat tatgtcgaag cgaccagcag atataatcat ttccacgccc gcctcgaagg       360
     tacgccgccg tctcaacttc gacagcccat atgccagccg tgctgctgcc cccattgtcc       420
     gcgtcaccaa agcaaaagca tgggcgaaca ggcccatgaa caggaagccc aggatgtaca       480
     ggatgtacag aagcccagat gttcctaggg gatgtgaagg cccatgtaag gtccagtctt       540
     ttgagtcccg acatgatgtc caacacatag gtaaagtcat gtgtgttagt gatgttactc       600
     gtggaactgg gctgacccat cgagttggta aaaggttttg tgttaagtcc gtctatgttc       660
     tgggcaagat ttggatggat gagaacatca agactaagaa tcacacgaat agtgttatgt       720
     ttttccttgt tagagatcgt aggcccgttg ataagcccca agactttggt gaggtattca       780
     acatgtttga taatgagcca agtacggcga ctgtgaagaa cgtgcatcgt gacaggtatc       840
     aggtgttgag gaagtggcat gcaactgtga ctggtggtca atatgcatcg aaggagcaag       900
     cgctcgtgaa gaagtttatt agagttaaca attatgttgt gtataaccag caagaggctg       960
     gcaagtatga aaaccatagt gagaatgcat taatgttgta catggcgtgt actcatgcct      1020
     ctaatcctgt gtatgctact ttgaagatac ggatctattt ctatgattcc gtaacaaatt      1080
     aataaatatt gaattttatt atgtttgaac tttgtacata aattgtttgc gcgaatacat      1140
     tccataatac atgatcgaca gctctaatta cattgtttat actaattaca gcaaaattat      1200
     ttaaaaaccg caacacttgg gtcctaaata cccttaagaa atgaccagtc tgaggctgta      1260
     aggtcgtcca gattcggaag gttagaaaac atttgtgtat ccccaacgct ttcctcaggt      1320
     tgtgattgaa ttgtacttgg actgttatga tgtcgtggtt cattaggaat ggccggtggt      1380
     ggtgctcggt tatcttgaaa tacaggggat ttgttatctc ccagataaac acgccattct      1440
     cggcctgagc tgcagtgatg ggttcccctg tgcgtaaatc catagtcgtg gcagcgtaat      1500
     gcgatgaaat atgaacagcc gcagtccagg tcaacgcgac gacgcctggt ccccttcttg      1560
     gctagcctgt gctgcacttt gattggaaca agagtagagt gggccttcga gggtgatgaa      1620
     ggtcgcattc tttaaagccc aatttttgag tgcggaattc ttctcttcat ccaagaactc      1680
     tttatagctg gaattgggtc ctggattgca gaggaagata gcgggaattc cacctttaat      1740
     ttgaactggc tttccgtatt tcgtatttga ttgccagtcc ctttgggccc ccatgaattc      1800
     tttaaagtgc tttaggtagt ggggatcgac gtcatcaatg acgttgtacc aggcgtcatt      1860
     actgtagacc ttagggctaa ggtctaggtg accacacaaa taattgtgtg gacccaacga      1920
     cctagcccac atggtcttcc ctgtccgact atcaccctct atgactacac ttacgggtct      1980
     caaaggccgc gcagcggcac tcaccacatt ctcggcagcc cattcgtcaa gttcatcggg      2040
     aacttgatca aaagaagaag aagaaaaagg agaaacataa acctccaacg gaggtgtaaa      2100
     aatcctatct aaatttgcat ttaaattatg aaactgtaat acataatcct tgggagcttt      2160
     ctcccttaat atattgaggg ccgcagcttt ggaccctgaa ttgattgcct cggcatatgc      2220
     gtcgttggca gactgctgac ctcctctagc tgatcttcca tcgatctgga aaactccaaa      2280
     atcaatgaag tctccgtctt tctccacata ggccttgaca tctgacgagc ttttagctcc      2340
     ctgaatgttc ggatggaaat gtgctgacct ggtaggggaa acgaggtcga agaatctgtt      2400
     gttttggcat ttgaatttac cttcgaactg tatgaggacg tgcagatgag gttccccatt      2460
     ttcatgtaat tcacgagaaa ccctgatgaa taatttatta gtgggggtgc ttaggttttg      2520
     aagttgggaa agtgcatcct ctttagtgag ggaacactgt ggataggtta agaaataatt      2580
     tttagcatat atttgaaatc gttttggagg aggcatgttg acttggtcaa tcggtactca      2640
     acaaacttgg ctatgcaatc ggtgaatggt actcaatata tagtgtgagt accaaatggc      2700
     atgatcgtaa ttttgaaaga aaattcaaaa ttcaaatccc gacaaaagcg gccatccgca      2760
     ctaatatt                                                               2768
//