ID JQ765412; SV 1; linear; genomic RNA; STD; VRL; 6497 BP. XX AC JQ765412; XX DT 03-JUN-2012 (Rel. 113, Created) DT 03-JUN-2012 (Rel. 113, Last updated, Version 1) XX DE Citrus tatter leaf virus strain shatang orange, complete genome. XX KW . XX OS Citrus tatter leaf virus OC Viruses; Riboviria; Tymovirales; Betaflexiviridae; Trivirinae; OC Capillovirus. XX RN [1] RP 1-6497 RA Bu Z.Z., Ding F.; RT ; RL Submitted (09-MAR-2012) to the INSDC. RL College of Plant Science and Technology, Huazhong Agricultural University, RL Wuhan, Hubei 430070, China XX DR MD5; a17e4c1cd399bde3b8bc9b76182490e0. XX FH Key Location/Qualifiers FH FT source 1..6497 FT /organism="Citrus tatter leaf virus" FT /host="citrus" FT /strain="shatang orange" FT /mol_type="genomic RNA" FT /country="China" FT /collection_date="08-Jul-2011" FT /db_xref="taxon:33759" FT CDS 37..6354 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="GOA:I3V6C0" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR008745" FT /db_xref="InterPro:IPR008879" FT /db_xref="InterPro:IPR027351" FT /db_xref="UniProtKB/TrEMBL:I3V6C0" FT /protein_id="AFK73722.1" FT /translation="MAFTYRNPLEIAINKLPSKQSDQLLSLTTDEIEKTLEVTNRFFSF FT SITPEDQELLTKHGLTLAPIGFKSHSHPVSKMIENHLLYICIPSLLSSFRSVAFFSLRE FT SKVDNFIKMHSVFSHGKIKSLGMYNAIIDGKDKYRYGEVSFTSFRDRVIGLRDQCLTRN FT KFPKVLFIHDELHFLSPFDMAFLFETIPEIDRVVATTVFPIELLFGDKVSKEPRVYTYK FT VHGSSFSFYPDGVASECYEQNLANSKWPFTCSGIQWANRKIRVTKLQSLFAHHVFSFDR FT GRACSEFNHFNKPSCLLAEEMRLPTRRFDKAVINRSTVSSLSTYMACLKTANAASAVAK FT LRQLEKRDLYPDELNFVYSFGEHFKNFGMRDDFDVSVLQWVKDKFCQVMPHFIAASFFE FT PTEFHLNMRKLLNDLATKGIEVPLSVMIPDKVNFIETRFHARMFEIAEAIGVKLDSLGK FT RFDYETESEEYFSENGYLFIPSKANPSRNWILNSGSCKIDYTRLIRARRFRLKRDFIDK FT IAAGKVPQRQLFLELGPRLTFESGKNEGEVSNEIEIIKDSEVANVPETSYVPLSTEDGQ FT GFEGSIPIDLINAFEPEEVKLPKRKRKNDCVFKAISAHLGIEVQDLLNFLVNEDISDEL FT LDCIEEDKGLSHEMIEEVLVTKGLSMVYTSDFKEMAVLNRKYGINGKMYCTIKGNHCEL FT SSKECFIRLLKEGGEAQMSNENLNADSLFDLGKFVHNRERAVKLAKSIARGTTGLLNSF FT DPAFCKAMVTLSELFPENFSSVVGLRMGFAGSGKTHKVLQWINYTPNVKRMFISPRRML FT ADEVEGQVKGTSCQIHTWETALKKIDGTFMEVFIDEVGLYPPGYLTLLQMCAFRKIVKG FT QSERFLKGKLAELSKTCLSIRCFGDPLQLRYYSAEDTNLLDKTHEIDLLTGTIKHKYLL FT QGYRFGQWFKELIDMPTRMDESKFSRKFFADISSVKTEDYGLILVAKREDKGVFAGRIP FT VATVSESQGMTISKRVLICLDQNLFAGGANAAIVAITRSKVGFDFVLKGNSLKEVQKMA FT QKTMWQFVLEGKNIPMERIVNMNPGASFYESPLDVGNSSIQDKASHDLFIMPFINLAEE FT EVDPEEVVGDVIEPVEWFKCHVPVFDTDPMLAEIFEKVAAKEKREFQSVLGLSNQFLDM FT EKNGCKIDILPFARQNVFPHHQASDDVTFWAGVQKRIKKSNWRREKSKFEEFESQGKEL FT LSEFLSMLPFEFKVSIKDIENGEKSFLEKRKLKSEKMWANHSERSDIDWKLDHVFLFMK FT SQYCTKEGKMFTEAKAGQTLACFQHIVLFRFGPMLRAIESAFLRSCGDSYYIHSGKNFF FT CLDSFVTKNAGIFDGFSIESDYTAFDSSQDHVILAFEMALLQYLGVSKEFQLDYLRLKL FT TLGCRLGSLAIMRFTGEFCTFLFNTFANMLFTQLKYKIDPRGYRILFAGDDMCSLSSLK FT RRRGERATRLLKSFSLTAVEEVRKFPMFCGWYLSPYGIIKSPKLLWARIKMMSERQLLK FT ECVDNYLFEAIFAYRLGERLYTILKEEDFEYHYLVIRFFVKNSKLLTGLSKSLIFEIGE FT GIGAEWLSSMSTISSRRSSQLTSKLTPSPHLNCTKMQPFLSQTYSTASKGLSQMSKFLQ FT GQGMDSYCLTLNSLMTLRLTPLERKAINTNIYIMESSWWELKPCCPTLEEWKGESSYMM FT GLVWIQKGVTSVLICLNSSLTVVTLGSDLSTVFQQLMQIWPKDLGSEWILIVHSMNRTR FT NCLLLTLGLHTDVSTQQDFSKLRLVIQGGLHRLSAAVRHSSLTKKSSWPSWITNPRCFW FT RRVHQMCMLKRDCLEATKFEDRAQFLPKGDQTQSCKKREDLGPSQLELKDLGKMSLEDV FT LQQARRHRVGVYLWKTHIDPAKELLTDPPPEGFKEGESFKGRELYLLLCNHYCKYLFGN FT IAVFGSSDKTQFPAVGFDTPPVHYSLTTTSKKGETEEEKKAREGSSGEKTKIWRIDLSN FT VVPELKTFAATSQHNSLNECTFRKLCEPFADLAREFLHERWSKGLATNIYKKWPKAFEK FT SPWVAFDFATGLKMNRLTPDEKQVIDRMTKRLFRTEGQKGVFEAGSESSLELEG" XX SQ Sequence 6497 BP; 1960 A; 1186 C; 1504 G; 1847 T; 0 other; aaatttaaca gcgcttaatt tccgcgcttt acgtcaatgg ctttcactta cagaaaccct 60 ctagaaattg caattaacaa acttccaagc aagcaatctg atcaattgct ttccttgacc 120 accgacgaga ttgaaaagac cttagaagtg acaaatcgct tcttttcttt ttcaatcact 180 ccagaagatc aagaactgtt gaccaaacat ggtctgacac ttgcaccaat tggatttaaa 240 tcacactccc atccagtatc caaaatgatt gaaaatcatc ttctgtacat atgtatccct 300 agccttctat cttcttttag atcagttgct ttcttttctt taagggaaag caaggttgat 360 aattttatta aaatgcattc agtcttctca catggaaaaa tcaagtcttt agggatgtac 420 aatgcaatca tcgatgggaa ggacaaatac agatatggtg aggtctcttt tacctccttc 480 agggacaggg tgattggttt gagggaccaa tgcttaacac gtaataaatt tccaaaagtc 540 ctctttatcc atgacgagtt gcacttttta agtccttttg acatggcctt tctatttgag 600 accataccag aaattgacag agttgtagct acaactgtct ttccaatcga actacttttt 660 ggtgataagg tttcaaaaga acccagggtt tacacttaca aggttcatgg ttcctccttc 720 tccttttacc ccgatggtgt tgcctctgaa tgctatgagc aaaatcttgc aaactcaaaa 780 tggcctttta cctgtagtgg tattcaatgg gccaacagga agatcagagt tactaaattg 840 cagagccttt ttgctcatca cgttttttca tttgacaggg gaagggcttg cagcgaattc 900 aaccacttca ataagccgag ttgcttactt gcggaagaga tgcgtttgcc cacaagaaga 960 tttgataagg ctgtcatcaa caggagcacg gtttcctctc tcagcactta tatggcgtgt 1020 ctcaaaactg caaatgcagc ctcagcagtt gccaagttaa gacagctgga gaagagagat 1080 ttgtaccccg atgaactaaa cttcgtttat tcttttgggg aacacttcaa aaactttgga 1140 atgagagacg actttgatgt gtcagtgctg caatgggtga aagataagtt ctgtcaggta 1200 atgcctcatt ttatagctgc tagttttttt gaaccgacag aatttcacct aaacatgagg 1260 aagctgttaa atgacctagc taccaaaggg attgaagttc ctttatccgt gatgattccg 1320 gacaaagtaa acttcattga aaccaggttt catgctagaa tgtttgaaat agcagaggcc 1380 ataggggtga agttggactc gcttggaaaa agatttgatt atgaaactga aagtgaagag 1440 tatttttcag agaatggtta tctctttatc ccctccaagg caaatccaag taggaattgg 1500 attttaaact ctggctcctg taaaattgac tacacgcggt tgatcagggc cagaaggttt 1560 agattgaaaa gggactttat agacaaaatt gccgctggga aggtacctca acgacagcta 1620 tttctagaat taggtccgag gttaacgttt gaatctggaa aaaatgaggg tgaggtgagt 1680 aatgagatcg agattataaa ggattctgaa gttgccaatg tgccagaaac atcatacgtt 1740 ccattgtcaa ctgaagatgg gcaaggtttt gaaggttcaa taccaatcga cttgataaat 1800 gcatttgaac cagaagaagt caaactcccg aaaagaaaaa ggaaaaatga ctgcgttttc 1860 aaagcaatat ctgctcacct gggaattgag gttcaagacc ttttaaattt tctggtcaat 1920 gaggacattt cagatgagct actagactgc attgaagagg ataaaggttt gtctcatgag 1980 atgattgaag aagttctagt aaccaaaggg ctttccatgg tttacacctc tgatttcaaa 2040 gaaatggcag ttcttaatag aaaatatgga atcaatggga aaatgtactg cacaatcaaa 2100 ggtaatcatt gtgagttgag ttcaaaggag tgctttatta ggctgttgaa agaaggtggt 2160 gaagcacaga tgtcaaatga aaatctgaat gctgactcat tatttgacct tggaaagttt 2220 gtacataatc gggaaagagc ggtcaaattg gcaaagtcta tagctcgagg gaccacaggt 2280 cttttgaatt cctttgatcc agccttctgc aaagccatgg tcactctctc agagctattt 2340 cctgaaaatt tctcttcagt ggttgggttg agaatgggat tcgctggctc tggcaagaca 2400 cacaaggttc ttcagtggat aaactacact ccaaatgtca aaagaatgtt cattagtcct 2460 agaagaatgt tagcagatga ggttgaagga caggttaaag gaacgtcttg ccagatccat 2520 acatgggaaa ctgctttgaa aaagattgat ggaaccttca tggaagtctt cattgatgaa 2580 gtgggtttgt atccacccgg atatctcaca cttttacaaa tgtgtgcttt tagaaagata 2640 gtgaagggcc agagtgagag gttcttaaaa ggtaagttgg ctgaattgtc aaagacgtgc 2700 ctgagtatta gatgtttcgg tgacccactg caactaaggt actattctgc tgaagacaca 2760 aatctcctgg acaaaacaca tgagattgac ctgctgactg gaactattaa gcacaaatac 2820 ctccttcagg ggtataggtt cggtcaatgg ttcaaagagt tgatagatat gccaactaga 2880 atggatgagt caaagttctc aagaaaattc tttgcagaca tttcaagtgt gaaaactgag 2940 gactatgggc taatattggt ggcaaaaagg gaagataagg gagttttcgc tgggaggatt 3000 cctgttgcca cagtcagtga atctcaaggg atgactatta gcaaaagagt gttgatatgc 3060 ctagaccaaa atctatttgc tgggggtgca aacgccgcaa ttgttgcaat cactagatca 3120 aaagttgggt ttgacttcgt cctcaaagga aattcgctga aagaagtgca gaaaatggca 3180 caaaagacaa tgtggcagtt cgtgctagaa ggcaaaaata tcccaatgga gaggatagtg 3240 aacatgaacc ccggggctag cttttacgag agtcctttag atgtgggaaa ctcatcaatc 3300 caagacaagg cttcacatga tttatttata atgcctttca taaacttggc tgaagaggaa 3360 gttgatcctg aggaagtcgt gggagatgtg attgaacctg ttgagtggtt taagtgtcat 3420 gtccctgtgt ttgacacaga tccgatgctt gcagagatct tcgaaaaggt tgcagcaaaa 3480 gagaaaaggg aatttcagtc tgtgcttggt ctctcaaatc aattcttgga tatggaaaag 3540 aatgggtgca aaatagacat actgcctttt gctcggcaaa acgtatttcc acatcatcaa 3600 gcttcagatg atgtcacctt ctgggcaggt gttcagaaaa gaattaaaaa gtcgaactgg 3660 aggcgagaga agtcaaaatt tgaggaattt gagagtcaag ggaaagaatt gctttctgaa 3720 tttttgtcaa tgctgccatt cgagtttaaa gtgagcatca aggacatcga aaacggggaa 3780 aaaagctttc tggagaaaag gaaactaaaa tccgagaaga tgtgggccaa tcactcagaa 3840 aggtctgaca ttgactggaa acttgaccac gtcttcctct ttatgaagtc ccaatactgc 3900 accaaagaag gtaaaatgtt tactgaagca aaagctggtc aaaccttagc atgtttccag 3960 cacatcgtcc ttttccgttt tggtcctatg ttgagggcaa ttgaaagtgc tttccttaga 4020 agttgcgggg attcatatta tatacactca ggaaagaatt tcttttgttt ggacagcttc 4080 gtgaccaaaa atgcaggcat ttttgatgga ttttcaattg agtccgacta tacagctttt 4140 gattcatctc aagaccatgt tatcttggct tttgagatgg cattactgca atatttgggc 4200 gtgtcaaagg agtttcaact ggactacctc agattgaaat taactctagg gtgtaggctt 4260 gggtctttag ccataatgag atttacaggg gagttctgta cttttctgtt taacacattt 4320 gccaatatgc ttttcactca gctaaagtat aaaatagatc caaggggata cagaattctg 4380 tttgctgggg acgacatgtg ctcattgagc tctcttaaga gaaggagagg ggagagggcc 4440 acaagactgt tgaagagttt ttctctcact gctgtggagg aagtaagaaa atttccaatg 4500 ttctgtgggt ggtacttgag cccttatggc atcatcaagt ctccaaaact gctttgggca 4560 agaatcaaga tgatgagtga aagacagctt ctcaaggagt gtgtagacaa ttacttgttt 4620 gaagcaatat ttgcctacag attaggtgag aggctttaca caattctgaa agaagaggat 4680 tttgaatacc attaccttgt aattaggttt tttgtcaaaa attcaaagtt actgactggt 4740 ttgagcaaga gccttatatt tgaaattggg gaaggtattg gagcagaatg gctatcgtca 4800 atgtcaacca tttcctcaag gaggtcgagt caactgacct caaaattgac gccatctcct 4860 catctgaact gtacaaagat gcaacctttt ttaagccaaa cgtactcaac tgcatcaaaa 4920 ggtttgagtc aaatgtcaaa gtttcttcaa ggtcagggga tggactcgta ttgtctgact 4980 ttaaactcct tgatgacact gagattgact ccattagaaa gaaaagcaat aaatacaaat 5040 atttacatta tggagtcatc ttggtgggaa ttaaagccat gctgcccaac tttagaggaa 5100 tggaagggag agtcatcata tatgatgggg cttgtttgga tccagaaagg ggtcacatct 5160 gttcttatct gtttaaattc gagtctgact gttgttactt tgggctcaga cctgagcact 5220 gtctttcaac aactgatgca aatttggcca aaagatttag gttcagagtg gattttgatt 5280 gtccacagta tgaacaggac acggaactgt ttgctcttga cattggggtt gcataccgat 5340 gtgtcaactc agcaagattt ctcgaaacta agactggtga ttcagggtgg gcttcacagg 5400 ctatcagcgg ctgtgaggca ctcaagttta acgaagaaat caagttggcc atcctggatc 5460 acaaaccccc gctgtttctg gaggagggtg caccaaatgt gcatgttgaa aagagactgt 5520 ttagaggcga caaaattcga agatcgcgct caatttctgc caaaagggga ccaaactcaa 5580 agctgcaaga aaagagagga tttaggtccc tctcagctag aattgaaaga tttggggaaa 5640 atgagtttgg aagacgtgct tcaacaagcg aggcgccacc gggtaggagt gtatctctgg 5700 aagactcaca tagacccggc aaaggagctt ctgacggatc ctccccctga aggattcaaa 5760 gaaggtgaaa gctttaaagg cagagagctt taccttcttc tctgcaatca ctattgtaaa 5820 tatttatttg gtaatattgc tgtttttggg tcttctgata agacccagtt tcccgctgtc 5880 ggttttgata ctccaccagt tcattacagc ctgacaacga cctcaaaaaa aggggaaact 5940 gaagaagaga agaaagccag agaagggtcg tctggcgaaa aaactaagat ttggaggatc 6000 gacttgtcaa atgttgtccc tgagttgaaa acctttgctg ctacttctca gcataactct 6060 ctgaacgaat gtacgttccg aaagctttgt gagccttttg ctgatttggc tcgtgaattt 6120 cttcatgaac ggtggtccaa aggattggcc accaacatat acaagaaatg gcccaaagct 6180 tttgagaaaa gcccatgggt ggcatttgat tttgccactg gtctaaaaat gaatcgtcta 6240 acacctgatg aaaagcaggt gattgacaga atgaccaaga ggctttttcg tactgaagga 6300 cagaaagggg ttttcgaggc aggttcggag agtagcttgg aactggaggg ttaggagtcg 6360 tttaaaattc cgcaaatttg gtcgcggtct tgcaggttga catgcctgcc tttatactta 6420 aataaagggt tcccccggtt ttctgtgcat ttccgggtta gtgtggtttt ttctagagtc 6480 tagagtttgt ccactcg 6497 //