ID JX415194; SV 1; circular; genomic DNA; STD; VRL; 2693 BP. XX AC JX415194; XX DT 20-MAY-2013 (Rel. 116, Created) DT 20-MAY-2013 (Rel. 116, Last updated, Version 1) XX DE Sida micrantha mosaic virus isolate SiMMV-Santaremensis[BR:780Si4a:08] DE segment DNA-A, complete sequence. XX KW . XX OS Sida micrantha mosaic virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2693 RX DOI; 10.1094/PHYTO-07-12-0174-R. RX PUBMED; 23489523. RA Barreto S.S., Hallwass M., Aquino O.M., Inoue-Nagata A.K.; RT "A study of weeds as potential inoculum sources for a tomato-infecting RT begomovirus in central Brazil"; RL Phytopathology 103(5):436-444(2013). XX RN [2] RP 1-2693 RA Barreto S.S., Hallwass M., Aquino O.M., Inoue-Nagata A.K.; RT ; RL Submitted (23-JUL-2012) to the INSDC. RL Virology, Embrapa Vegetables, Km 09, BR060, Brasilia, DF 70359-970, Brazil XX DR MD5; e056e92742c172f431b8ddf2797b0389. XX FH Key Location/Qualifiers FH FT source 1..2693 FT /organism="Sida micrantha mosaic virus" FT /segment="DNA-A" FT /host="Sida santaremensis" FT /strain="Santaremensis" FT /isolate="SiMMV-Santaremensis[BR:780Si4a:08]" FT /mol_type="genomic DNA" FT /country="Brazil:Goias, Luziania" FT /collected_by="Sarah S. Barreto" FT /collection_date="2008" FT /clone="780/Si4a" FT /db_xref="taxon:228897" FT CDS 273..1028 FT /codon_start=1 FT /product="CP" FT /note="V1" FT /db_xref="GOA:R4QDS3" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:R4QDS3" FT /protein_id="AGL72258.1" FT /translation="MPKRDPSWRQMAGTSKVSRSTNFSPRGGGGPKYNKASEWVHRPMY FT RKPRIYRMIRTPDVPRGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRF FT CVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATV FT KNDLRDRYQVMHKFYAKVTGGQYASNEQALVKRFWKVNNHVVYNHQEAGKYENHTENAL FT LLYMACTHASNPVYATLKIRIYFYDSITN" FT CDS complement(1025..1423) FT /codon_start=1 FT /product="REn" FT /note="C3" FT /db_xref="GOA:R4QFX9" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:R4QFX9" FT /protein_id="AGL72259.1" FT /translation="MDSRTGELITAHQAENGVYIWEIPNPLYFKTYKVEDLLYTRTRVY FT HIQIRFNHNLRRVLGLHKAYLNFQVWTTSLTASGTTYLIRLRRLVMMYLDQLGVITLNN FT VIRAVRFATDKAYVNYVLEDHDIKFKFY" FT CDS complement(1170..1559) FT /codon_start=1 FT /product="Trap" FT /note="C2" FT /db_xref="GOA:R4QN77" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:R4QN77" FT /protein_id="AGL72260.1" FT /translation="MLNSSSSTPPSIKPRHRIAKKRAIRRRRVDLECGCTIYQHLNCTG FT HGFTHRGTHHCTSGREWRIYLGDTKSPVFQDVQGRGLAVHKDASVPHPDTVQPQPQESI FT GSPQGLPELPSLDDFSDSFWNDLFD" FT CDS complement(1480..2559) FT /codon_start=1 FT /product="Rep" FT /note="C1" FT /db_xref="GOA:R4QRF7" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:R4QRF7" FT /protein_id="AGL72261.1" FT /translation="MPSAPKRFQIKAKNYFLTYPNCSLSKEEALSQLKTLNTPTNKKFI FT KVCRELHENGEPHLHVLLQFEGNYCCQNQRFFDLVSPTRSTHFHPNIQRAKSSSDVKSY FT VDKDGDTIEWGEFQIDGRSARGGCQTANDAAAEALNAPSKEIALQIIREKLPEKFLFQF FT HNLNSNLDRIFARAPEPWTPPFRLSSFTNVPDEMQEWADDYFGRGSAARPLRPISLIVE FT GGSRTGKTMWARALGPHNYFSGHLDFNSKVYSDQVEYNVIDDVAPHYLKLKHWKELIGA FT QQKWQTNCKYGKPRLIEGGVPSIVLCNPGEGASYKDFLDKEENAALRGWTLHNAKFIFL FT DAPLYQTETQDCQEESHQA" FT CDS complement(2142..2405) FT /codon_start=1 FT /product="C4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:R4QQL0" FT /protein_id="AGL72262.1" FT /translation="MKMGSLISTCFFNSRATTAAKINDSSTWSPQQGQHISIRTFRELS FT HRPTSSPMSTRTEIRSSGGNSKSTAEVLEAVARQLTTLPQKP" XX SQ Sequence 2693 BP; 656 A; 638 C; 649 G; 750 T; 0 other; accggatggc cgcgcgattt tgcccccccc ccccacgtgg cgctctggtg gtcgtgcgat 60 ctctctcccc cccactcgcg cgacgtggaa ctctggtgtc cgcgcgttct ccccccgcgc 120 gctctgcctt taatttaaat taaaggaaat aactttcatc aggaccaatg aaattgcgtc 180 ttttaagcct agatatttgc gaaagacttg ggccctaagt tgtttgacgg ctatataatt 240 aagtcatgtg tgacgtcagg aattgtttcg aaatgcccaa gcgggatccc tcatggcgcc 300 agatggcggg aacctcaaag gttagccgct ctaccaactt ttcccctcgt ggaggaggag 360 gcccaaagta caacaaggcc tctgaatggg ttcacaggcc catgtatagg aagcccagga 420 tatacaggat gataaggact cctgatgttc caagaggctg tgaagggccc tgtaaggtcc 480 agtcctacga gcagcgtcac gacatctcac atgtcggcaa ggtcatgtgc atatctgacg 540 tcacacgtgg caacggtata acccaccgtg tcggtaagcg tttctgcgtt aagtctgtgt 600 acattttagg gaagatatgg atggacgaga acatcaagct caagaatcac acgaacagtg 660 tcatgttctg gttggtcaga gaccgtagac cgtatggtac tcctatggac tttggccagg 720 tgttcaacat gtttgacaac gagcccagca ctgctacggt gaagaacgat ctccgtgatc 780 gttatcaagt tatgcacaag ttctacgcca aagtcactgg tggtcaatat gccagcaatg 840 aacaggctct ggtcaagagg ttctggaagg tcaacaatca tgtggtgtac aaccaccagg 900 aagctggcaa gtatgagaat cacacggaga atgctttgtt actgtatatg gcatgtactc 960 atgcctctaa ccctgtgtat gcaacgctta agattcggat ctacttctac gattcgataa 1020 ccaattaata aaatttgaat tttatatcat gatcttcaag tacatagttt acataggctt 1080 tgtcagtggc aaagcgaaca gctctaatta cattgttaag cgtgattacg cctaattgat 1140 ctaagtacat cattacaagg cgtctaagcc taatcaaata agtcgttcca gaagctgtca 1200 gagaagtcgt ccagacttgg aagttcaggt aggccttgtg gagacccaat actctcctga 1260 ggttgtggtt gaaccgtatc tggatgtggt acactcgcgt ccttgtgtac agcaagtcct 1320 ctaccttgta cgtcttgaaa tacaggggat ttggtatctc ccagatatat acgccattct 1380 ctgcctgatg tgcagtgatg agttccccgg tgcgtgaatc catgtcccgt gcagttgagg 1440 tgttggtata tggtgcagcc gcactcaagg tccactcgtc tacgcctgat ggctctcttc 1500 ttggcaatcc tgtgtctcgg tttgatagag gggggcgtcg aggaagatga atttagcatt 1560 gtggagtgtc cagcctctca atgccgcatt ttcctctttg tctaggaagt ctttatagct 1620 ggccccctcc ccaggattgc acagcacgat tgaagggacc ccaccttcaa tcaaacgagg 1680 ctttccgtac ttgcagtttg tctgccattt ctgttgggcc cctattagct ctttccagtg 1740 tttcaacttt aggtaatgcg gagcgacgtc atcaatgacg ttatactcca cttgatcaga 1800 atataccttt gagttgaaat ccagatggcc actgaagtaa ttatgtgggc ctaatgctct 1860 agcccacatc gtcttgcccg ttctgctacc gccttcaaca attaaactta tgggcctcaa 1920 tggccgcgca gcggaacccc tcccaaaata atcatcggcc cactcttgca tctcgtctgg 1980 cacgttagtg aatgaggaga gtcgaaacgg aggggtccac ggctccggag cccttgcaaa 2040 aatcctatct aaattactat ttagattgtg aaactgaaat aagaactttt ccggcagctt 2100 ctcccggatt atctgcaagg cgatttcctt ggaaggtgcg tttaaggctt ctgcggcagc 2160 gtcgttagct gtctggcaac cgcctctagc acttctgccg tcgatttgga attcccccca 2220 ctcgatcgta tctccgtcct tgtcgacata ggacttgacg tcggacgatg acttagctct 2280 ctgaatgttc ggatggaaat gtgttgacct tgttggggag accaggtcga agaatcgttg 2340 attttggcag cagtagttgc cctcgaattg aagaagcacg tggagatgag gctccccatt 2400 ttcatggagc tctctgcaaa ccttgatgaa cttcttattt gtaggagtgt ttagggtttt 2460 taattgggaa agtgcttctt ctttcgataa tgagcaattg ggatatgtga ggaaataatt 2520 tttggctttt atttgaaagc gctttggagc tgatggcata tttgtaaata tgacccttac 2580 taccaattgg tagctgctct aaaactcata tgaatcggta gttatggtag ctcttatata 2640 ctacaacttc ttaagggcct aaagggccta aagcggccat ccgcactaat att 2693 //