ID JX524226; SV 1; linear; genomic RNA; STD; VRL; 6656 BP. XX AC JX524226; XX DT 28-OCT-2012 (Rel. 114, Created) DT 28-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE Papaya mosaic virus isolate PMV-HN, complete genome. XX KW . XX OS Papaya mosaic virus OC Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus. XX RN [1] RP 1-6656 RA Chen W.Y.; RT "Amplification of Full-length cDNA of Papaya mosaic virus of Hainan"; RL Unpublished. XX RN [2] RP 1-6656 RA Chen W.Y.; RT ; RL Submitted (24-AUG-2012) to the INSDC. RL Chinese Academy of Tropical Agricultural Sciences, Institute of Tropical RL Bioscience and Biotechnology, 4 Xueyuan Road, Haikou, Hainan 571101, China XX DR MD5; ac5023e8f36b18af5b054b2e85dcc54d. DR EuropePMC; PMC4213569; 25337891. XX CC ##Assembly-Data-START## CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..6656 FT /organism="Papaya mosaic virus" FT /host="Carica papaya" FT /isolate="PMV-HN" FT /mol_type="genomic RNA" FT /country="China" FT /isolation_source="plant leaves" FT /collection_date="01-Jan-2007" FT /db_xref="taxon:12181" FT CDS 100..4743 FT /codon_start=1 FT /product="replicase" FT /note="ORF1(176K)" FT /db_xref="GOA:K4NQ76" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR005123" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR037151" FT /db_xref="UniProtKB/TrEMBL:K4NQ76" FT /protein_id="AFV46461.1" FT /translation="MANLRSVFEQLNDVSLRAVIQEEAYRDIKLTIKETKTYNPYAHPV FT AVADSLEKLGIETNPFAVKAHTHAAAKTIELDMYKIVSFYLPKENPTTFMFMKRSKLQY FT FRRGPQQKDVFLNAHIEPKDVARYDVDTLFDKNVTPQITTNTAFMGDTLHFLPLTAIER FT IFKSSPKLQTLYATMVLPPEALHRLHSLHPGIYELEFHQEHFIYKPGGHAGAAYIHKYE FT QLEWIKVGRFKWADEKGLTHMVTSQILETKGANHLFIFQRGRFLTPELRCFSTETKYVT FT MPPIFLPKQFNARLPIKKTTAQQLFLYVKSVKNVTERDIWAKMRQLLKTSELQDYNPRE FT VTLLVNYFLLIARLRSETCFDNVLSGGMFKKLFKPFIAWWEIQKHKIFGNEEFEQLMEA FT LEWVDVTLTYPTKTFDNRGWVVKLEARRGYEWFADEMHKPKGPELNLEEKKTDPDAASY FT EKYLKALSLLQKEPEVMEAKEAEATDEPQRPEVKEEQAEASTSGRAEEIQEDPATKKGK FT EEPNPNRDLLCPCGLHLKIKNAEFPELPVLDHPDHLTGRKAWFFSKDGKPYSYTGGSHA FT SRGWPNWLEKILAAIEIKEPLPEFNQCLVQQFKLQAAIPFHRDDEPCYPKGHQVLTINH FT SGECLTQIACQKGKASITMGFGDYYLSPVGFQESHKHAVSNTTGGRVSLTFRCTVQQNK FT FNDDGSMEALDNLPWKAWIPKLQNLGFQGRQLQYDPNGALISPIEEIRSMPKCKPEGVP FT EVVYKTLDGLARAPTPYSPNPIRARAYTSDVKNCRIGALLRQQGKEWGCRFDALVEAGK FT RELAISVIHGAGGSGKSQALQTLIKDNPELDITVVLPTNELRLDWLRKLPKAPQEKFKT FT FEKALLAPPTPIVIFDDYGKLPAGYVEAFCLYFSTVQLIILTGDCKQSVHHESNENATT FT SSIEPLVKEASELCRYYINATHRNKKDLANKLGVYSEKTGLTEVTHGTTPIPGLHMLVP FT SLYKKQAFSEMGHKVSTYAGCQGITAPKIQILLTEETSLCSREVLYTALSRAVHSIHFV FT NASPNNQAFWKKLECTPYLKAFLSTLREEVAQPIEEKKAEPTPVEPPRTHIAKEDAMVE FT YENVIEKMPEKHEREIFSEKHGHSNCVQTEDPFIQMFSHQQAKDDTLLWATIEARLVIS FT NPKANWQEYLEKRPVGEVLFESYKRAMHLPKMPIPFEEDLWNSSMHEVQKTYLSKPENM FT IKNGMARQSPDYDPNVISLFLKSQWVKKMEKLGAIKIKPGQTIASFHQATVMLFGTMAR FT YMRRMREVFQPAHIRINCEMTPEDLSSWAAGEGGHWKFKGPSLANDFTAFDQSQDGAML FT QFEILKARHHSIPEDILDAYLTIKTNSKIFLGTLAIMRLTGEGPTFDANTECNIAFTHT FT KFNIPEGTAQLYAGDDSAIDGLPALRPSFKMIEQKLTLRSKPQVALQQKGDWAEFCGFR FT ITPKGLIKDPKKLHASWMLEKKKGNVKNVLRSYELDLALAYQHKDSLHELLSEEELKYH FT YETVRSIVKSGGGGVLNTYISKDESLY" FT CDS 4727..5428 FT /codon_start=1 FT /product="triple gene block protein 1" FT /note="ORF2(26K)" FT /db_xref="GOA:K4P3L9" FT /db_xref="InterPro:IPR027351" FT /db_xref="UniProtKB/TrEMBL:K4P3L9" FT /protein_id="AFV46462.1" FT /translation="MNHFINLLVAEGFVRTNEPLTDQLVVHSVAGSGKSTLIRKFLEEQ FT PLARAYTHCRADPPNLEGRFIQPFKGPCPDHFNILDEYCKEPISAKFQVLIADPLQYRT FT QHLRPHYVNHKSHRLGPETCKLLSSLGIKVESHRRDRDVVTLSGIFGSPILGQAIALDR FT SASDLLRAHGIQALCPIESIGQEYPVVTVVSSEPLRNVRFKDQVYIALSRHTEQLHVLS FT PEFPHTTSRPQ" FT CDS 5382..5717 FT /codon_start=1 FT /product="triple gene block protein 2" FT /note="ORF3(12K)" FT /db_xref="GOA:K4NSA2" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:K4NSA2" FT /protein_id="AFV46463.1" FT /translation="MSSHQNFLTPPPDHSKAILAVAVGVGLAIVLHFSLSYKLPSPGDN FT IHSLPFGGTYRDGTKSIIYNSPHRGPGQSGALPIITVFAIIECTLHVLRKRDNPVRPQH FT SDCPNCS" FT CDS 5653..5859 FT /codon_start=1 FT /product="triple gene block protein 3" FT /note="ORF4(7K)" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/TrEMBL:K4NPL8" FT /protein_id="AFV46464.1" FT /translation="MFSGKEITLFALSTLIALIVLNYMSATPNPVCLIELTGHSAVLRG FT NNCESLTSGVIEALSAHLHGLRN" FT CDS 5889..6536 FT /codon_start=1 FT /product="coat protein" FT /note="CP" FT /db_xref="GOA:A2IAW7" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/TrEMBL:A2IAW7" FT /protein_id="AFV46465.1" FT /translation="MSKSSMSTPNTAFPAITQEQMSSIKVDPTSNLLPSQEQLKSVSTL FT MVAAKVPAASVTTVALELVNFCYDNGSSAYTTVTGPSSIPEISLAQLASIVKASGTSLR FT KFCRYFAPIIWNLRTDKMAPANWEASGYKPSAKFAAFDFFDGVENPAAMQPPSGLIRSP FT TQEERIANATNKQVHLFQAAAQDNNFASNSAFITKGQISGSTPTIQFLPPPE" XX SQ Sequence 6656 BP; 2007 A; 1677 C; 1513 G; 1459 T; 0 other; gaaaagaaac acaaagcaaa gcaaagcaaa gcaactcaaa taaaccatat ttggccaagg 60 cacttggtaa tcaaacgggc acaaccctag attaacgata tggcaaattt gaggagtgtt 120 ttcgaacagt tgaacgacgt ctcactccgg gctgttattc aagaagaggc ctacagagac 180 attaagctca ctattaagga aactaaaacc tacaatcctt atgcacatcc agtagcagta 240 gcggatagtt tagaaaaatt aggaatagaa actaacccct ttgccgtcaa ggcgcatacg 300 catgccgcgg caaagacaat agaattagat atgtacaaaa tagtttcttt ctacctccca 360 aaggagaacc ccaccacctt tatgttcatg aagaggagca agttgcaata ttttagaaga 420 ggcccacagc aaaaagatgt gttcctcaat gctcacatag aacccaaaga cgtggctagg 480 tatgacgtgg acaccctttt tgacaagaac gtgaccccac agattaccac aaacacagcc 540 tttatggggg ataccctcca ttttcttcca ctaacagcga ttgaaaggat ctttaaatcc 600 tcccccaaac ttcaaaccct ctacgccact atggtactcc caccggaggc cctgcataga 660 ctgcattctc tgcaccctgg tatatatgaa ttagaatttc accaagaaca tttcatctac 720 aaaccagggg gtcatgctgg ggcagcgtac atccacaaat acgagcaact tgagtggatt 780 aaagtgggaa ggtttaagtg ggcggacgag aaggggctca cccacatggt gacctcacag 840 attttggaaa ctaaaggtgc caaccacctc ttcattttcc agagagggag gtttctgact 900 ccagaattga ggtgtttcag cactgagaca aaatatgtca ccatgcctcc catcttcctc 960 cccaagcagt ttaatgcccg gttgccaatt aagaaaacca ccgcccaaca attgtttctc 1020 tacgtaaaat cagtgaaaaa tgtaacagag agggacatct gggcaaagat gagacagttg 1080 ctcaagactt cggagctaca agattacaat ccaagagagg tgactctgct ggtgaactat 1140 tttctcttga ttgccagatt aaggtcggaa acgtgttttg acaacgtcct cagcggggga 1200 atgttcaaga aactcttcaa acccttcatc gcatggtggg agatccaaaa acacaaaatt 1260 ttcggaaatg aggagtttga acagttgatg gaagctctgg agtgggtgga tgtaacactg 1320 acctacccaa caaaaacttt tgacaatcgg ggttgggtgg ttaagctgga agcgaggagg 1380 ggttacgagt ggttcgctga tgagatgcac aagccgaagg gtccagaact aaacttggag 1440 gagaagaaaa cggacccgga cgccgcatcc tacgaaaaat acttgaaagc cctgagcctt 1500 ttacagaaag aaccggaggt catggaagcc aaagaagcag aggcaacaga tgaaccccaa 1560 aggcccgaag ttaaggaaga gcaggcagag gcttccacga gtgggagggc tgaagaaatt 1620 caagaggacc cggcaaccaa gaaagggaag gaggagccga accccaatcg ggacctgctc 1680 tgcccatgcg gactacatct aaagatcaaa aatgccgaat ttcctgaact tccggtactc 1740 gatcatccag atcatctcac cggaagaaaa gcatggttct tctcaaagga tggaaagcca 1800 tactcctaca caggaggctc acatgcatcc cgaggctggc caaattggct ggagaaaatt 1860 ttagccgcaa tagaaatcaa agagccactg ccggagttca accaatgctt agtccagcag 1920 tttaaactcc aagcggccat cccattccac cgagatgatg aaccgtgtta tccaaagggt 1980 caccaggttc tcaccatcaa ccactcaggg gaatgcctca cccaaatagc ttgccaaaaa 2040 ggaaaggcaa gtataactat gggattcggt gactactact tgagcccagt gggattccaa 2100 gagtcccaca agcatgcggt aagcaacacc acagggggaa gggtgtctct gactttcaga 2160 tgcacagtcc agcaaaataa atttaatgat gatggaagta tggaagccct tgataacctt 2220 ccttggaaag cgtggattcc gaaactgcaa aatttaggat tccaaggaag gcagcttcag 2280 tatgatccta atggagcact gatcagcccc attgaggaaa ttcgaagcat gcccaagtgc 2340 aagcctgaag gggttccaga agtagtttac aagacgctgg acggactagc ccgtgcgcca 2400 actccatatt ctccaaaccc tatccgagct agagcataca cctcagatgt caaaaactgt 2460 agaattgggg ccctgctaag gcaacaaggt aaggagtggg gatgcaggtt tgacgcattg 2520 gtagaagctg gcaagagaga gttggccatc tccgtaattc acggagcggg aggaagcggg 2580 aagtcacaag cattgcagac cctgattaag gacaacccag agcttgatat cacggtggtc 2640 ctcccaacca atgaactcag gctggattgg cttcggaagt taccaaaagc cccgcaggaa 2700 aagttcaaaa ccttcgaaaa ggcattgtta gctcccccca ccccaatagt catcttcgat 2760 gattatggca aactaccggc aggctacgtg gaagccttct gcttgtactt ctccactgta 2820 caactgatca tcctaaccgg agattgcaaa cagagtgtgc accatgaaag taatgagaat 2880 gccacaacaa gctcaataga acccctggtt aaagaagcct cagagctttg caggtattac 2940 atcaatgcca cacacagaaa taagaaagat ctggccaaca aactgggagt ttactcagag 3000 aaaaccgggt tgaccgaagt gacccacggc accaccccga tccctgggct tcacatgcta 3060 gtgccctcgc tttacaaaaa gcaagccttt tcagagatgg gacataaggt gtccacctac 3120 gcgggctgtc aggggatcac cgctccaaaa atccaaatct tgctaacaga ggaaacctct 3180 ctctgctcca gagaggtcct gtacactgca ctatcgaggg ccgtacattc aatccatttt 3240 gtaaacgcga gcccaaacaa tcaggctttt tggaaaaaac tggagtgcac tccatacctc 3300 aaggctttcc tgtcaacttt gagagaagaa gtggcacagc ctattgaaga gaagaaagct 3360 gaacccactc cagtagagcc cccacgaaca cacattgcaa aggaagatgc aatggtggaa 3420 tatgaaaacg tcatcgagaa aatgcctgaa aagcatgaaa gggaaatttt ctcagaaaaa 3480 cacgggcaca gcaactgtgt tcaaaccgaa gaccccttca ttcagatgtt ttctcaccaa 3540 caggcaaaag atgacaccct actttgggct accattgaag ccagattggt catctccaac 3600 ccaaaggcca attggcaaga gtaccttgaa aagaggccag tgggagaagt gctgtttgaa 3660 tcatacaagc gggccatgca cttgccaaag atgcccattc cctttgagga ggatctttgg 3720 aactctagca tgcatgaggt gcaaaagacc tacttgtcca agcctgaaaa catgatcaag 3780 aatggaatgg ccaggcagag ccccgactat gacccaaatg tgatctccct gttcctgaag 3840 tctcagtggg tgaagaaaat ggaaaaatta ggggcaataa agatcaaacc cggtcaaacc 3900 atagcctctt ttcatcaagc cactgtaatg ctctttggaa ctatggcaag atacatgagg 3960 agaatgcggg aagtcttcca acctgcccac atcaggatta actgtgagat gaccccggaa 4020 gacctgagct cttgggcggc tggagaaggg ggacactgga agtttaaagg cccttcactt 4080 gccaatgact tcacagcatt tgaccagtca caagatggtg ctatgctaca gtttgaaatt 4140 cttaaagcta ggcaccactc catcccagag gacattttgg acgcgtacct cacgataaaa 4200 actaactcaa agatattcct gggaacattg gcaataatga gattgaccgg tgaggggccc 4260 actttcgacg caaacactga atgcaatatc gccttcacac acactaaatt caacattcca 4320 gaaggcacag cacaattgta tgcaggggat gactcagcaa tcgatggttt gcctgcacta 4380 agaccaagtt ttaagatgat cgaacaaaag ctcaccttga ggtccaaacc ccaggtagcc 4440 cttcaacaaa aaggagactg ggcagagttc tgtggcttcc gaatcacccc aaaagggctg 4500 atcaaggacc ccaagaaact ccatgcctct tggatgctag aaaagaagaa ggggaatgtt 4560 aaaaacgtat tgagatcata cgagcttgat ttggcgttag cataccaaca caaggatagc 4620 ctgcacgaac tactttccga ggaggagctc aagtaccact acgagacggt tcgttccata 4680 gttaagtcag gaggaggtgg agttttgaat acttacatct ccaaggatga atcactttat 4740 taaccttctc gtagctgagg gatttgtcag gactaacgaa cccctcactg accaacttgt 4800 agtccattcg gtagccggaa gtggaaagtc aaccctcatt aggaaatttc tggaggagca 4860 accccttgca agagcataca cgcactgtag ggccgaccca cccaatcttg aggggaggtt 4920 cattcagccg ttcaagggac cgtgtccaga tcatttcaac atactggacg aatactgcaa 4980 ggagccaatc tcggccaagt tccaagtcct catagccgac ccgcttcaat acaggactca 5040 acatctgcga cctcactacg tcaatcataa atcccacagg ttgggacctg agacttgcaa 5100 actactgtcc agccttggaa tcaaggtcga aagtcataga agagaccgtg acgtggtgac 5160 cctgagtggt atcttcggtt caccaatcct aggccaggct attgcgctag acaggtctgc 5220 cagtgacctg ctaagagctc acggaatcca ggccctctgc cccatcgaat caattggcca 5280 ggaataccca gtggtgacag tagtttcttc ggagcccttg agaaacgtga ggttcaagga 5340 tcaagtgtac atagccctat ccagacacac tgaacagctc catgtcctct caccagaatt 5400 tcctcacacc acctcccgac cacagtaagg ctatcttagc tgtagcagta ggagtaggtt 5460 tagctatagt tctgcatttt tctctctctt ataagttgcc ctcaccaggt gataacattc 5520 acagtcttcc ttttggaggc acgtacaggg acggaactaa atccattatt tacaactctc 5580 cccacagagg accgggacag tcaggcgccc tgccaatcat tacggtgttt gccatcatcg 5640 agtgtaccct ccatgttctc aggaaaagag ataaccctgt tcgccctcag cactctgatt 5700 gccctaattg ttcttaacta catgtcagcg actcccaatc cggtgtgtct gattgaactc 5760 acaggacata gtgctgttct aagaggaaat aactgtgaaa gtttaacatc aggtgttata 5820 gaggccctat ccgcccacct acacgggctt aggaactagc ttcattcgaa attcaaaatt 5880 ctgttttaat gtctaagtca agtatgtcca cacccaatac agccttcccc gccatcaccc 5940 aggaacaaat gagctcgatt aaggtcgatc caacgtccaa tcttctgccc tcccaagagc 6000 agttaaagtc agtgtccacc ctcatggtag ctgctaaggt tccagcagcc agtgttacaa 6060 ctgtggcatt ggagttggtt aacttctgct atgacaatgg gtccagcgcg tacaccacag 6120 tgactggccc atcatcaata ccggagatat cactggcaca attggccagc attgtcaaag 6180 cttccggcac ttcccttaga aaattctgcc ggtacttcgc gccaataatc tggaatctga 6240 ggacggacaa aatggctcct gccaattggg aggcctcagg atacaagcca agcgccaaat 6300 ttgccgcgtt cgacttcttc gacggggtgg agaatccggc ggccatgcaa cccccttcgg 6360 gactaatcag gtcgccgacc caggaagagc ggattgccaa tgccaccaac aaacaggtgc 6420 atctcttcca agccgcggca caggacaaca actttgccag caactccgcc ttcatcacca 6480 aaggccaaat ttctgggtca acccccacca tccaattcct tccacccccc gaataaacac 6540 acttgaccca gcccgttgtt tagcactatt tgttggggct attgagtttt caaaatgtgc 6600 ttttgctata gtagacgaaa cttactacct agtttggttt tgcaaatttc ctttcc 6656 //