ID KC261960; SV 1; linear; genomic RNA; STD; VRL; 4787 BP. XX AC KC261960; XX DT 04-JUN-2013 (Rel. 117, Created) DT 05-AUG-2023 (Rel. 144, Last updated, Version 2) XX DE Tomato spotted wilt virus isolate TSWV-8 segment M, complete sequence. XX KW . XX OS Orthotospovirus tomatomaculae OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Tospoviridae; Orthotospovirus. XX RN [1] RC Publication Status: Online-Only RP 1-4787 RX PUBMED; 23696821. RA Lian S., Lee J.S., Cho W.K., Yu J., Kim M.K., Choi H.S., Kim K.H.; RT "Phylogenetic and recombination analysis of tomato spotted wilt virus"; RL PLoS One 8(5):E63380(2013). XX RN [2] RP 1-4787 RA Lian S., Lee J.-S., Cho W.K., Kim K.-H.; RT ; RL Submitted (27-NOV-2012) to the INSDC. RL Department of Agricultural Biotechnology, Seoul National University, RL Gwanakno 599, Seoul 151-921, South Korea XX DR MD5; 694facfe6ffdbc9b73ce61488e980539. XX CC GenBank Accession Numbers KC261959-KC261961 represent sequences CC from the 3 segments of Tomato spotted wilt virus isolate TSWV-8. CC CC ##Assembly-Data-START## CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..4787 FT /organism="Orthotospovirus tomatomaculae" FT /segment="M" FT /host="Lactuca indica" FT /isolate="TSWV-8" FT /mol_type="genomic RNA" FT /country="South Korea" FT /collection_date="Sep-2009" FT /db_xref="taxon:3052585" FT gene 101..1009 FT /gene="NSm" FT CDS 101..1009 FT /codon_start=1 FT /gene="NSm" FT /product="nonstructural protein" FT /db_xref="InterPro:IPR000603" FT /db_xref="InterPro:IPR006889" FT /db_xref="UniProtKB/TrEMBL:R9RUU6" FT /protein_id="AGM53736.1" FT /translation="MLTFFSNKGSSKSAGKDEGPLVSLAKHNGNVEVSKPWSSSDEKLA FT LTKAMDTSKGKILLNTEGTSSFGTYESDSITESEGYDLSARMIVDTNHHISNWKNDLFV FT GNGKQNANKVIKICPTWDSRKQYMMISRIVIWVCPTIPNPTGKLVVALVDPNMSSEKQV FT ILKGQGTITDPICFVFYLNWSIPKINNTPENCCQLHLMCSQEYKKGVSFGSVLYSWTKE FT FCDSPRADKDKSCVVIPLNRAIRARSQAFIEACKLIIPKGNSEKQIKKQLKELSSNLER FT SVEEEEEGISDSVAQLSFDEI" FT gene complement(1296..4703) FT /gene="Gn-Gc" FT CDS complement(1296..4703) FT /codon_start=1 FT /gene="Gn-Gc" FT /product="glycoprotein precursor" FT /db_xref="GOA:R9RUV9" FT /db_xref="InterPro:IPR005167" FT /db_xref="InterPro:IPR014414" FT /db_xref="UniProtKB/TrEMBL:R9RUV9" FT /protein_id="AGM53737.1" FT /translation="MRFLKLLELVVKVSLFTIALSSVLLAFLIFRATDAKVEIIRGDHP FT EVYDDSAENEVPTAASIQRKAILETLTNLMLESQTPGTRQIREEESTIPIFAESTTQKT FT ISVSDLPNNCLNASSLKCEIKGISTYNVYYQVENNGVIYSCVSDSAEGLEKCDNSLNLP FT KRFSKVPVIPITKLDNKRHFSVGTKFFISESLTQDNYPITYNSYPTNGTVSLQTVKLSG FT DCKITKSNFANPYTVSITSPEKIMGYLIKKPGENVEHKVISFSGSASITFTEEMLDGEH FT NLLCGDKSAKIPKTNKRVRDCIIKYSKSIYKQTACINFSWIRLILIALLIYFPIRWLVN FT KTTKPLFLWYDLIGLITYPILLLINCLWKYFPFKCSNCGNLCIITHECTKICICNKSKA FT SKEHSSECPILSKETDHDYNKHKWTSMEWFHLIVNTKLSFSLLKFVTEILIGLVILSQM FT PMSMAQTTQCLSGCFYVPGCPFLVTSKFEKCPEKDQCYCNVKEDTIMESIFGTNIVIEG FT PNDCIENQDCVAHPSIDNLIKCRLGCEYLDLFRNKPLYNGFSDYTGSSLGLTSVGLYEA FT KRLRNGIIDSYNSTDKISGMIAGDSLNKNETSIPENILPRQSLIFDSVVDGKYRYMIEQ FT SLLGGGGAIFMLNDKTSETAKKFVIYIKSVGIHYEVSEKYTTAPIQSTHTDFYSTCTGN FT CDTCRKNQALTGFQDFCITPTSYWGCEEAWCFAINEGATCGFCRNIYDMDKSYRIYSVL FT KSTIVADVCISGILGGQCSRITEEVPYENALFQADIQADLHNDGITIGELIAHGPDGHI FT YSGNIANLNDPVKMFGHPQLAHDGVPIFTKKTLEGDDMSWDCAAIGKKSITIKTCGYDT FT YRFRSGLEQISDIPVSFKDFSSFFLEKAFSLGKLKIVVDLPSDLFKIAPKRPSITSTRL FT NCNGCLLCGQGLSCILEFFSDLTFSTSISIDACSLSTYQLAVKKGSNKYNITMFCSANP FT DKKKMTLYPEGNPDISVEVLVNNVVVEEPENIIDQNDEYAHEEQQYNSDSSAWGFWDYI FT KSPFNFIASYFGSFFDTIRVILLIASIFLAIYFCSVLTTICKGYVKNESYKSRSKIEDD FT DDSEIKAPMLMKDTMTRRRPPMDFSHLV" XX SQ Sequence 4787 BP; 1548 A; 849 C; 844 G; 1546 T; 0 other; agagcaatca gtgcatcaga aatataccta ttatacactt tgctaagaat caatcaatta 60 cattacacaa gctcctctac cttaggctgt tgaactcaaa atgttgactt ttttcagtaa 120 taaggggtct tctaagtctg ccggaaagga tgaaggtcct ttagtttcac tagctaaaca 180 taatggtaat gttgaagtct caaaaccatg gtcttcttct gatgaaaagc ttgctttgac 240 taaagctatg gatacatcca aaggaaagat actgttgaac acagagggaa catcttcctt 300 tggaacctat gaatctgatt ctatcacaga atcagagggt tatgatcttt ctgcaagaat 360 gatagtagat acaaaccatc atatctcaaa ctggaaaaat gatctttttg ttggcaacgg 420 gaagcagaac gctaataagg tcatcaagat ctgtccaact tgggacagca gaaaacaata 480 catgatgatt tctaggattg tgatatgggt ctgccccact ataccaaacc ctacaggaaa 540 acttgtggtt gccctagttg atcccaacat gtcatctgaa aagcaagtca ttctgaaggg 600 tcaggggaca ataactgatc ccatatgttt tgtcttttat ctgaactggt ctattccaaa 660 aataaacaac actccagaaa actgctgtca gctgcatttg atgtgcagcc aagaatacaa 720 gaagggggtt tcttttggta gtgtcttgta ttcttggaca aaggagtttt gtgattcacc 780 cagagctgat aaagacaaaa gttgtgtggt tatacctcta aacagagcta ttagagctag 840 atctcaagca ttcattgagg cttgcaagct gataattcct aaaggaaata gtgaaaagca 900 gattaaaaaa cagcttaaag agttgagctc aaatcttgag agatcagttg aagaagaaga 960 ggaagggatt tctgatagtg ttgctcagtt atcttttgat gaaatatagt acttttaata 1020 ccacttattt aagcttaaat ttctgttaat tttgcatttt taaatcaaaa aacaaaacaa 1080 aaacaaaaaa caaaaaagaa aaacaaaaaa caaaaaaatc aaaaaagaaa aaacaaaaac 1140 aaaataaggc tgaaaagcca aactttggtc cgaagactct ttttttgttg ttttttgttt 1200 atttgtattt tttgtttgtt tttttgttta ttttatatat acataatctg actaatgtag 1260 agaattgaat caaatttagc ctgtgacaag cagcctcaga caaggtgaga gaaatccata 1320 ggtggccttc gtcttgtcat tgtatctttc attaacatag gggctttgat ctcagaatca 1380 tcatcatcct ctatcttgga tctagattta taagattcat tcttgacata tcctttacaa 1440 atggttgtta gaacagaaca gaaataaatc gcaaggaaaa tggatgcaat aagcaatatc 1500 actctgatag tatcaaaaaa cgagccaaaa taacttgcaa tgaaattgaa tgggctctta 1560 atataatccc agaagcccca tgctgaagaa tcagaattat attgttgttc ctcatgagca 1620 tactcatcat tttgatctat tatgttctct ggttcttcta caacaacatt gttgaccaga 1680 acctccaccg aaatatctgg attgccttct ggatacaacg tcattttctt cttgtccgga 1740 ttagcagaac aaaacattgt tatgttgtat ttatttgatc cttttttaac agccagttga 1800 taagtagata gagagcaagc atctatagaa attgaagtag aaaatgtcaa atccgagaaa 1860 aattctaaaa tgcaagataa accttgaccg catagaagac agccgttgca atttaatctt 1920 gttgaagtta tagaaggtct cttaggagca attttaaaaa gatcagatgg aagatcaacg 1980 acgatcttga gtttgcctaa actgaaagct ttttccaaga aaaaactaga gaaatccttg 2040 aaactaacag gaatatctga tatttgctct aaaccagatc taaatctgta tgtatcatat 2100 ccgcatgttt taatagtgat tgattttttc cctattgctg cacaatccca agacatgtca 2160 tctccttcta gagttttctt agtaaaaata ggcactccat catgagccaa ttgtgggtga 2220 ccaaacattt tgacaggatc attcaagttt gcaatatttc cagaataaat atggccgtca 2280 ggtccatgag ctatcagttc acctatagtg ataccatcat tgtgcaaatc tgcttgtata 2340 tcagcttgaa acaaggcatt ttcataagga acctcttcag tgatccttga gcactgacct 2400 cctaaaatac cagaaataca aacatctgcc actatggttg attttagcac tgaataaatt 2460 ctgtatgatt tatccatgtc atagatattc cgacagaatc cacatgtagc accttcatta 2520 attgcaaaac accaagcttc ttcacatccc caataagaag ttggtgttat acaaaaatct 2580 tggaaacctg ttaaagcttg attttttctg caagtgtcac agtttcctgt gcaagttgaa 2640 taaaaatctg tgtgagtgct ttggatagga gctgttgtgt atttttctga cacttcataa 2700 tgaattccca cacttttgat ataaatcaca aattttttgg ctgtttccga ggttttatca 2760 ttcaacatga atatagcccc tcctcctcct aaaagagatt gttctatcat gtatctatat 2820 ttcccatcta caacagaatc aaagatcaat gattgtctag gcagaatgtt ctctggtatg 2880 cttgtttcat ttttgtttag agagtctcct gcaatcattc cagaaatttt gtctgtacta 2940 ttataagaat ctattatacc attcctcaat ctcttagctt catacagacc aaccgacgtc 3000 aaccctaaag agcttcctgt ataatctgaa aatccgttat acaaaggttt gtttctaaat 3060 aaatctaggt attcgcaacc taatctgcat tttataagat tatcaataga tgggtgtgca 3120 acgcaatcct ggttctctat gcaatcatta ggaccttcta taacaatgtt agtgccaaag 3180 atactttcca taatcgtatc ttcttttaca ttacagtaac attgatcttt ttcagggcat 3240 ttttcaaatt tgcttgtaac caaaaaagga cagcctggaa cataaaaaca tccacttaaa 3300 cattgggtag tttgagccat agacatgggc atttgagaca aaatgaccaa acctattaag 3360 atttcagtca caaatttcag caaactgaag ctaagcttag tgttcactat tagatggaac 3420 cattccatgc tagtccactt atgtttgttg tagtcatgat ctgtttcttt ggacaatatg 3480 ggacactctg aagaatgttc ttttgaggct ttgcttttgt tgcagatgca aattttagta 3540 cattcatgtg tgattatgca caaattgcca cagttagaac atttaaatgg aaaatatttc 3600 cataagcaat ttatgagcaa caaaataggg tatgtgatca agcctataag atcataccag 3660 agaaaaaggg gtttggttgt cttgtttact aaccaccgga tagggaaata gatcaacaaa 3720 gctatcaata ttaatcttat ccaagaaaaa ttgatgcagg ctgtttgttt ataaatgctt 3780 tttgaatatt tgattatgca atctctaact cttttgtttg tttttggtat tttagctgat 3840 ttgtcaccgc acaagagatt gtgctcacca tccaacattt cctcagtaaa agtgatgctt 3900 gctgatccag aaaaagatat gaccttgtgt tccacatttt caccaggctt ttttatcaaa 3960 taacccatga tcttctcagg gctagtgatg ctaacagtat agggattagc aaagtttgat 4020 ttagttattt tgcagtcgcc agataacttc acagtttgta atgatactgt tccattagta 4080 gggtacgagt tataagttat aggataatta tcttgtgtca ggctttctga aatgaagaat 4140 tttgtcccaa ctgaaaaatg ccttttgttg tcaagtttgg taatgggaat aactgggact 4200 ttagagaatc tttttggcag atttaaagaa ttgtcacatt tttctaaacc ttctgctgaa 4260 tcagaaacac aggaatatat gacaccatta ttttccactt gataataaac attataagtg 4320 gatatccctt ttatctcaca ttttaatgaa gaagcattca agcagttgtt gggaagatcc 4380 gagacagaga ttgttttttg cgtagttgat tcagcaaaaa tagggatggt tgattcttct 4440 tctcgtatct ggcgggttcc aggagtctga gattctagca tcagattagt taaagtctcc 4500 aagatagcct tgcgttgaat tgatgcagca gtgggtactt cattctcagc agaatcatca 4560 taaacctcag gatggtctcc acgaattatt tctactttgg catctgtggc tctgaagatc 4620 aagaatgcca acaagacaga actcagggca attgtgaaaa gactcacttt taccactagt 4680 tctagtagtt ttaaaaatct catcctagac gtctgctcag attataatgg ttatatgatt 4740 aatttcaaga tgtctggatt aaggtttttg tttgcactga ttgctct 4787 //